Wall clock time and date at job start Tue Mar 31 2020 06:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52991 * 109.47352 * 2 1 4 4 N 1.46507 * 109.47581 * 180.02562 * 3 2 1 5 5 C 1.34769 * 119.99789 * 82.24415 * 4 3 2 6 6 O 1.21352 * 119.99879 * 184.31402 * 5 4 3 7 7 C 1.49452 * 120.00403 * 4.04302 * 5 4 3 8 8 O 1.21356 * 119.99690 * 355.84696 * 7 5 4 9 9 N 1.34773 * 120.00354 * 175.85065 * 7 5 4 10 10 C 1.46502 * 120.00207 * 185.03765 * 9 7 5 11 11 C 1.52992 * 109.47136 * 175.04070 * 10 9 7 12 12 C 1.50701 * 115.54990 * 65.14939 * 11 10 9 13 13 H 1.07998 * 119.99938 * 273.62069 * 12 11 10 14 14 C 1.37879 * 119.99876 * 93.62379 * 12 11 10 15 15 N 1.31515 * 120.00528 * 4.59089 * 14 12 11 16 16 Si 1.86809 * 119.99798 * 184.59559 * 14 12 11 17 17 H 1.48497 * 109.47117 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47059 * 119.99767 * 16 14 12 19 19 H 1.48496 * 109.46909 * 239.99586 * 16 14 12 20 20 C 1.52999 * 117.50265 * 279.47543 * 11 10 9 21 21 C 1.53000 * 117.50035 * 210.81770 * 11 10 9 22 22 C 1.46496 * 119.99813 * 262.25464 * 4 3 2 23 23 C 1.53001 * 117.49637 * 198.64576 * 22 4 3 24 24 C 1.53008 * 117.49952 * 129.98803 * 22 4 3 25 25 H 1.09005 * 109.47407 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47174 * 299.99767 * 1 2 3 27 27 H 1.08996 * 109.47431 * 59.99661 * 1 2 3 28 28 H 1.09004 * 109.47174 * 240.00233 * 2 1 3 29 29 H 1.08999 * 109.46903 * 120.00858 * 2 1 3 30 30 H 1.08999 * 109.47150 * 60.00286 * 3 2 1 31 31 H 1.08999 * 109.47817 * 300.00298 * 3 2 1 32 32 H 0.97002 * 120.00121 * 5.03139 * 9 7 5 33 33 H 1.09004 * 109.46715 * 295.04063 * 10 9 7 34 34 H 1.09004 * 109.47046 * 55.03900 * 10 9 7 35 35 H 0.96990 * 120.00278 * 185.00898 * 15 14 12 36 36 H 1.09007 * 117.49508 * 0.02562 * 20 11 10 37 37 H 1.08998 * 117.49807 * 145.01958 * 20 11 10 38 38 H 1.08995 * 117.50336 * 214.98543 * 21 11 10 39 39 H 1.09004 * 117.49755 * 359.97438 * 21 11 10 40 40 H 1.08996 * 115.55689 * 344.31532 * 22 4 3 41 41 H 1.09007 * 117.49988 * 359.97438 * 23 22 4 42 42 H 1.08998 * 117.50133 * 145.01751 * 23 22 4 43 43 H 1.08996 * 117.49688 * 214.97733 * 24 22 4 44 44 H 1.08999 * 117.50068 * 359.97438 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1784 1.2851 -1.1574 6 8 5.3893 1.2067 -1.1488 7 6 3.4334 1.2013 -2.4503 8 8 2.2198 1.1989 -2.4522 9 7 4.1093 1.1281 -3.6140 10 6 3.3830 1.1573 -4.8860 11 6 4.3829 1.1852 -6.0436 12 6 5.2412 -0.0447 -6.1909 13 1 6.1628 -0.1299 -5.6343 14 6 4.8500 -1.0612 -7.0364 15 7 3.7758 -0.9198 -7.7819 16 14 5.8456 -2.6395 -7.1227 17 1 6.9992 -2.5485 -6.1921 18 1 4.9870 -3.7880 -6.7367 19 1 6.3421 -2.8363 -8.5083 20 6 5.0126 2.5330 -6.4010 21 6 3.9619 1.9102 -7.3235 22 6 4.2380 1.6133 1.2562 23 6 5.7048 2.0391 1.1663 24 6 5.3468 0.6066 1.5700 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5140 0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 5.0766 1.0563 -3.6094 33 1 2.7574 0.2684 -4.9676 34 1 2.7558 2.0479 -4.9260 35 1 3.4592 -1.6607 -8.3218 36 1 4.7148 3.3999 -5.8109 37 1 6.0476 2.5301 -6.7429 38 1 4.3059 1.4979 -8.2720 39 1 2.9723 2.3670 -7.3409 40 1 3.6536 1.9952 2.0932 41 1 6.1246 2.1917 0.1720 42 1 6.0854 2.7009 1.9443 43 1 5.4918 0.3266 2.6133 44 1 5.5305 -0.1830 0.8414 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261227276.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:25 Heat of formation + Delta-G solvation = -4.602913 kcal Electronic energy + Delta-G solvation = -24468.239047 eV Core-core repulsion = 21002.146099 eV Total energy + Delta-G solvation = -3466.092947 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.84522 -38.67427 -36.91697 -36.62445 -35.22208 -33.39374 -32.14094 -31.93909 -27.24257 -26.11613 -25.49306 -24.31210 -22.41942 -21.64393 -21.61991 -21.04020 -19.73614 -18.97412 -17.49670 -16.51524 -16.22848 -15.82100 -15.66358 -15.27180 -14.74498 -14.51141 -14.33101 -14.04350 -13.82100 -13.40300 -13.16243 -13.08517 -12.73325 -12.24210 -12.07818 -11.97354 -11.59135 -11.57295 -11.42870 -11.03890 -10.96336 -10.93666 -10.71600 -10.59796 -10.51850 -10.28368 -10.21418 -9.55412 -9.14635 -8.97957 -8.57837 -8.45032 -8.31469 -8.17932 -6.10515 -4.19972 1.70809 2.51477 3.24878 3.34109 3.38072 3.46885 3.70733 3.91827 4.35028 4.66703 4.78300 4.89037 4.96088 5.02297 5.13824 5.15645 5.29725 5.36092 5.38742 5.58173 5.67526 5.76797 5.87376 5.93964 5.95940 6.08451 6.21915 6.27156 6.28698 6.35085 6.36688 6.47615 6.64511 6.66289 6.75494 7.01283 7.10536 7.14399 7.32042 7.57272 7.77006 7.79223 8.12733 8.30442 8.49696 8.82767 9.47761 10.96232 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015574 B = 0.004305 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.405548 B = 6502.042317 C = 6749.729870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.132 4.132 3 C 0.099 3.901 4 N -0.561 5.561 5 C 0.507 3.493 6 O -0.516 6.516 7 C 0.493 3.507 8 O -0.529 6.529 9 N -0.666 5.666 10 C 0.161 3.839 11 C 0.014 3.986 12 C -0.497 4.497 13 H 0.061 0.939 14 C 0.074 3.926 15 N -0.876 5.876 16 Si 0.888 3.112 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.284 1.284 20 C -0.212 4.212 21 C -0.131 4.131 22 C 0.066 3.934 23 C -0.190 4.190 24 C -0.185 4.185 25 H 0.053 0.947 26 H 0.049 0.951 27 H 0.062 0.938 28 H 0.069 0.931 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.119 0.881 32 H 0.413 0.587 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.261 0.739 36 H 0.063 0.937 37 H 0.079 0.921 38 H 0.094 0.906 39 H 0.062 0.938 40 H 0.130 0.870 41 H 0.134 0.866 42 H 0.090 0.910 43 H 0.095 0.905 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.016 5.105 16.316 17.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.170 4.170 3 C -0.022 4.022 4 N -0.292 5.292 5 C 0.291 3.709 6 O -0.392 6.392 7 C 0.273 3.727 8 O -0.409 6.409 9 N -0.316 5.316 10 C 0.038 3.962 11 C 0.013 3.987 12 C -0.535 4.535 13 H 0.079 0.921 14 C -0.130 4.130 15 N -0.512 5.512 16 Si 0.716 3.284 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.210 1.210 20 C -0.249 4.249 21 C -0.169 4.169 22 C -0.038 4.038 23 C -0.227 4.227 24 C -0.224 4.224 25 H 0.072 0.928 26 H 0.068 0.932 27 H 0.081 0.919 28 H 0.088 0.912 29 H 0.073 0.927 30 H 0.088 0.912 31 H 0.136 0.864 32 H 0.250 0.750 33 H 0.089 0.911 34 H 0.065 0.935 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.112 0.888 39 H 0.081 0.919 40 H 0.148 0.852 41 H 0.152 0.848 42 H 0.109 0.891 43 H 0.113 0.887 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -3.322 5.008 16.073 17.160 hybrid contribution 0.812 -1.084 0.018 1.355 sum -2.509 3.924 16.091 16.752 Atomic orbital electron populations 1.21619 0.95078 1.01665 1.01790 1.21813 0.96370 0.96717 1.02105 1.22278 0.76925 0.98367 1.04655 1.47248 1.07665 1.69352 1.04970 1.20555 0.87486 0.77583 0.85325 1.90614 1.13660 1.48054 1.86860 1.19936 0.87758 0.79753 0.85224 1.90615 1.13177 1.50372 1.86714 1.45912 1.12307 1.68331 1.05033 1.21231 0.94074 1.00278 0.80592 1.19069 0.96612 0.90819 0.92203 1.20410 1.06796 1.00877 1.25407 0.92055 1.24974 0.95349 0.98501 0.94182 1.70013 1.23521 1.31002 1.26673 0.86597 0.80409 0.83540 0.77885 1.19597 1.20922 1.20988 1.23075 0.98228 0.97288 1.06348 1.22450 0.95893 1.02087 0.96458 1.21805 0.89099 1.05481 0.87387 1.23772 0.96170 0.97267 1.05540 1.23261 1.02985 0.94199 1.01937 0.92807 0.93206 0.91914 0.91191 0.92721 0.91240 0.86368 0.75017 0.91052 0.93465 0.92929 0.91828 0.90258 0.88762 0.91922 0.85199 0.84836 0.89135 0.88659 0.88299 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.91 37.16 0.37 -1.14 16 2 C -0.13 -1.60 5.73 -26.74 -0.15 -1.75 16 3 C 0.10 1.19 5.04 -4.04 -0.02 1.17 16 4 N -0.56 -7.54 2.87 -166.61 -0.48 -8.01 16 5 C 0.51 8.29 7.45 -11.59 -0.09 8.21 16 6 O -0.52 -9.09 12.17 5.50 0.07 -9.03 16 7 C 0.49 8.92 7.61 -11.59 -0.09 8.84 16 8 O -0.53 -9.85 11.84 5.49 0.07 -9.78 16 9 N -0.67 -12.96 5.47 -60.73 -0.33 -13.29 16 10 C 0.16 3.46 5.51 -4.04 -0.02 3.43 16 11 C 0.01 0.32 1.63 -155.66 -0.25 0.07 16 12 C -0.50 -12.83 8.64 -34.44 -0.30 -13.13 16 13 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 14 C 0.07 1.95 5.41 -17.82 -0.10 1.85 16 15 N -0.88 -23.88 11.90 55.43 0.66 -23.22 16 16 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 19 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 20 C -0.21 -4.43 9.96 -26.70 -0.27 -4.70 16 21 C -0.13 -2.97 8.85 -26.70 -0.24 -3.20 16 22 C 0.07 0.75 6.62 -67.93 -0.45 0.30 16 23 C -0.19 -2.23 9.64 -26.69 -0.26 -2.49 16 24 C -0.19 -2.12 9.85 -26.69 -0.26 -2.38 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.06 6.97 -51.93 -0.36 0.69 16 29 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.65 7.92 -51.93 -0.41 0.23 16 31 H 0.12 1.64 5.41 -51.93 -0.28 1.35 16 32 H 0.41 8.08 7.81 -40.82 -0.32 7.77 16 33 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 35 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 36 H 0.06 1.21 8.14 -51.92 -0.42 0.79 16 37 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 38 H 0.09 2.34 7.62 -51.93 -0.40 1.94 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.13 1.09 8.02 -51.93 -0.42 0.67 16 41 H 0.13 1.95 5.32 -51.95 -0.28 1.68 16 42 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.10 1.37 7.47 -51.93 -0.39 0.98 16 LS Contribution 359.16 15.07 5.41 5.41 Total: -1.00 -27.46 359.16 -8.79 -36.25 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -7.04 Total: 10.94 kcal Atomic # 6 Polarization: -2.82 SS G_CDS: -2.12 Total: -4.94 kcal Atomic # 7 Polarization: -44.37 SS G_CDS: -0.15 Total: -44.52 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: 0.13 Total: -18.81 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -27.46 -8.79 -36.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261227276.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.648 kcal (2) G-P(sol) polarization free energy of solvation -27.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds