Wall clock time and date at job start Tue Mar 31 2020 06:50:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52991 * 109.47352 * 2 1 4 4 N 1.46507 * 109.47581 * 180.02562 * 3 2 1 5 5 C 1.34769 * 119.99789 * 82.24415 * 4 3 2 6 6 O 1.21352 * 119.99879 * 184.31402 * 5 4 3 7 7 C 1.49452 * 120.00403 * 4.04302 * 5 4 3 8 8 O 1.21356 * 119.99690 * 355.84696 * 7 5 4 9 9 N 1.34773 * 120.00354 * 175.85065 * 7 5 4 10 10 C 1.46502 * 120.00207 * 185.03765 * 9 7 5 11 11 C 1.52992 * 109.47136 * 175.04070 * 10 9 7 12 12 C 1.50701 * 115.54990 * 65.14939 * 11 10 9 13 13 H 1.07998 * 119.99938 * 273.62069 * 12 11 10 14 14 C 1.37879 * 119.99876 * 93.62379 * 12 11 10 15 15 N 1.31515 * 120.00528 * 4.59089 * 14 12 11 16 16 Si 1.86809 * 119.99798 * 184.59559 * 14 12 11 17 17 H 1.48497 * 109.47117 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47059 * 119.99767 * 16 14 12 19 19 H 1.48496 * 109.46909 * 239.99586 * 16 14 12 20 20 C 1.52999 * 117.50265 * 279.47543 * 11 10 9 21 21 C 1.53000 * 117.50035 * 210.81770 * 11 10 9 22 22 C 1.46496 * 119.99813 * 262.25464 * 4 3 2 23 23 C 1.53001 * 117.49637 * 198.64576 * 22 4 3 24 24 C 1.53008 * 117.49952 * 129.98803 * 22 4 3 25 25 H 1.09005 * 109.47407 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47174 * 299.99767 * 1 2 3 27 27 H 1.08996 * 109.47431 * 59.99661 * 1 2 3 28 28 H 1.09004 * 109.47174 * 240.00233 * 2 1 3 29 29 H 1.08999 * 109.46903 * 120.00858 * 2 1 3 30 30 H 1.08999 * 109.47150 * 60.00286 * 3 2 1 31 31 H 1.08999 * 109.47817 * 300.00298 * 3 2 1 32 32 H 0.97002 * 120.00121 * 5.03139 * 9 7 5 33 33 H 1.09004 * 109.46715 * 295.04063 * 10 9 7 34 34 H 1.09004 * 109.47046 * 55.03900 * 10 9 7 35 35 H 0.96990 * 120.00278 * 185.00898 * 15 14 12 36 36 H 1.09007 * 117.49508 * 0.02562 * 20 11 10 37 37 H 1.08998 * 117.49807 * 145.01958 * 20 11 10 38 38 H 1.08995 * 117.50336 * 214.98543 * 21 11 10 39 39 H 1.09004 * 117.49755 * 359.97438 * 21 11 10 40 40 H 1.08996 * 115.55689 * 344.31532 * 22 4 3 41 41 H 1.09007 * 117.49988 * 359.97438 * 23 22 4 42 42 H 1.08998 * 117.50133 * 145.01751 * 23 22 4 43 43 H 1.08996 * 117.49688 * 214.97733 * 24 22 4 44 44 H 1.08999 * 117.50068 * 359.97438 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1784 1.2851 -1.1574 6 8 5.3893 1.2067 -1.1488 7 6 3.4334 1.2013 -2.4503 8 8 2.2198 1.1989 -2.4522 9 7 4.1093 1.1281 -3.6140 10 6 3.3830 1.1573 -4.8860 11 6 4.3829 1.1852 -6.0436 12 6 5.2412 -0.0447 -6.1909 13 1 6.1628 -0.1299 -5.6343 14 6 4.8500 -1.0612 -7.0364 15 7 3.7758 -0.9198 -7.7819 16 14 5.8456 -2.6395 -7.1227 17 1 6.9992 -2.5485 -6.1921 18 1 4.9870 -3.7880 -6.7367 19 1 6.3421 -2.8363 -8.5083 20 6 5.0126 2.5330 -6.4010 21 6 3.9619 1.9102 -7.3235 22 6 4.2380 1.6133 1.2562 23 6 5.7048 2.0391 1.1663 24 6 5.3468 0.6066 1.5700 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8932 -0.5140 0.8899 30 1 1.6767 1.9562 0.8900 31 1 1.6767 1.9564 -0.8899 32 1 5.0766 1.0563 -3.6094 33 1 2.7574 0.2684 -4.9676 34 1 2.7558 2.0479 -4.9260 35 1 3.4592 -1.6607 -8.3218 36 1 4.7148 3.3999 -5.8109 37 1 6.0476 2.5301 -6.7429 38 1 4.3059 1.4979 -8.2720 39 1 2.9723 2.3670 -7.3409 40 1 3.6536 1.9952 2.0932 41 1 6.1246 2.1917 0.1720 42 1 6.0854 2.7009 1.9443 43 1 5.4918 0.3266 2.6133 44 1 5.5305 -0.1830 0.8414 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261227276.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:50:25 Heat of formation + Delta-G solvation = -19.924052 kcal Electronic energy + Delta-G solvation = -24468.903421 eV Core-core repulsion = 21002.146099 eV Total energy + Delta-G solvation = -3466.757322 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.10164 -40.06853 -38.56457 -37.85412 -36.24042 -34.95162 -33.92878 -33.15519 -28.84100 -27.53314 -27.03815 -25.61030 -23.32157 -23.03732 -22.61891 -22.57645 -21.42945 -20.47598 -18.78869 -18.12213 -17.55566 -17.13018 -16.99625 -16.64249 -16.57695 -15.86172 -15.61908 -15.43871 -14.99644 -14.77927 -14.43972 -14.34900 -14.16217 -13.77336 -13.49419 -13.12415 -13.03797 -12.97629 -12.85695 -12.53099 -12.43608 -12.38347 -12.01175 -11.90322 -11.77572 -11.58781 -11.38000 -11.22291 -11.03750 -10.43160 -10.35696 -10.08189 -9.92713 -9.49804 -8.12818 -6.26054 0.35423 1.30297 1.37559 1.42004 1.51239 2.11474 2.39426 2.45773 2.97347 3.13914 3.30052 3.58314 3.84221 3.97041 4.05484 4.14246 4.18972 4.21653 4.38102 4.50345 4.51712 4.60039 4.67286 4.74319 4.81384 4.83769 4.89460 4.96494 5.02229 5.05252 5.17020 5.26725 5.29972 5.33497 5.38745 5.50964 5.54331 5.66506 5.71924 5.75954 5.97213 6.33367 6.36991 6.75297 6.81137 7.02197 7.43265 8.93519 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.015574 B = 0.004305 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1797.405548 B = 6502.042317 C = 6749.729870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.128 4.128 3 C 0.098 3.902 4 N -0.552 5.552 5 C 0.504 3.496 6 O -0.534 6.534 7 C 0.491 3.509 8 O -0.535 6.535 9 N -0.673 5.673 10 C 0.178 3.822 11 C -0.009 4.009 12 C -0.506 4.506 13 H 0.055 0.945 14 C 0.029 3.971 15 N -0.902 5.902 16 Si 0.943 3.057 17 H -0.269 1.269 18 H -0.284 1.284 19 H -0.281 1.281 20 C -0.185 4.185 21 C -0.136 4.136 22 C 0.066 3.934 23 C -0.195 4.195 24 C -0.185 4.185 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.047 0.953 28 H 0.031 0.969 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.412 0.588 33 H 0.039 0.961 34 H 0.057 0.943 35 H 0.260 0.740 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.068 0.932 39 H 0.075 0.925 40 H 0.173 0.827 41 H 0.101 0.899 42 H 0.119 0.881 43 H 0.126 0.874 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.245 5.979 19.134 20.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.167 4.167 3 C -0.023 4.023 4 N -0.282 5.282 5 C 0.287 3.713 6 O -0.412 6.412 7 C 0.272 3.728 8 O -0.414 6.414 9 N -0.322 5.322 10 C 0.055 3.945 11 C -0.010 4.010 12 C -0.543 4.543 13 H 0.073 0.927 14 C -0.172 4.172 15 N -0.539 5.539 16 Si 0.769 3.231 17 H -0.194 1.194 18 H -0.210 1.210 19 H -0.207 1.207 20 C -0.222 4.222 21 C -0.174 4.174 22 C -0.037 4.037 23 C -0.233 4.233 24 C -0.223 4.223 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.086 0.914 30 H 0.129 0.871 31 H 0.116 0.884 32 H 0.248 0.752 33 H 0.058 0.942 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.190 0.810 41 H 0.119 0.881 42 H 0.137 0.863 43 H 0.144 0.856 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.564 5.889 18.923 20.136 hybrid contribution 0.866 -1.335 -0.798 1.780 sum -2.697 4.554 18.126 18.883 Atomic orbital electron populations 1.21588 0.93728 1.02031 1.02362 1.21764 0.97527 0.96547 1.00812 1.22354 0.75906 0.98354 1.05693 1.47373 1.08438 1.67534 1.04879 1.20207 0.87153 0.78402 0.85526 1.90635 1.14160 1.49318 1.87073 1.20367 0.87803 0.78907 0.85701 1.90624 1.13567 1.50170 1.87077 1.45819 1.12095 1.69388 1.04942 1.20820 0.93386 0.99130 0.81174 1.19128 0.97481 0.91267 0.93094 1.20655 1.06810 1.02037 1.24830 0.92723 1.25602 0.96280 1.01052 0.94219 1.70106 1.24794 1.31602 1.27443 0.85744 0.79144 0.80411 0.77788 1.19363 1.21019 1.20690 1.23042 0.97687 0.96697 1.04761 1.22344 0.97126 1.02693 0.95259 1.22285 0.89248 1.05234 0.86943 1.23706 0.96685 0.98115 1.04769 1.23261 1.03135 0.93200 1.02737 0.92623 0.90474 0.93430 0.95024 0.91417 0.87130 0.88363 0.75172 0.94248 0.92504 0.93073 0.89309 0.90305 0.91313 0.90651 0.81000 0.88062 0.86274 0.85632 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.68 9.91 71.98 0.71 -1.96 16 2 C -0.13 -2.93 5.73 30.59 0.18 -2.75 16 3 C 0.10 2.12 5.04 86.38 0.44 2.56 16 4 N -0.55 -13.85 2.87 -799.41 -2.29 -16.14 16 5 C 0.50 16.45 7.45 87.27 0.65 17.10 16 6 O -0.53 -19.08 12.17 -3.25 -0.04 -19.12 16 7 C 0.49 18.04 7.61 87.27 0.66 18.70 16 8 O -0.54 -20.19 11.84 -3.27 -0.04 -20.23 16 9 N -0.67 -26.71 5.47 -464.40 -2.54 -29.25 16 10 C 0.18 7.81 5.51 86.38 0.48 8.29 16 11 C -0.01 -0.42 1.63 -52.93 -0.09 -0.51 16 12 C -0.51 -26.55 8.64 25.60 0.22 -26.33 16 13 H 0.05 2.87 7.82 -2.91 -0.02 2.85 16 14 C 0.03 1.58 5.41 84.66 0.46 2.04 16 15 N -0.90 -50.30 11.90 21.45 0.26 -50.05 16 16 Si 0.94 43.16 29.54 68.60 2.03 45.19 16 17 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 19 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 20 C -0.18 -7.58 9.96 30.62 0.30 -7.27 16 21 C -0.14 -6.21 8.85 30.62 0.27 -5.94 16 22 C 0.07 1.26 6.62 45.00 0.30 1.56 16 23 C -0.20 -4.16 9.64 30.62 0.30 -3.86 16 24 C -0.18 -3.81 9.85 30.62 0.30 -3.51 16 25 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 26 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.03 0.96 6.97 -2.38 -0.02 0.94 16 29 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.11 1.54 7.92 -2.39 -0.02 1.52 16 31 H 0.10 2.60 5.41 -2.40 -0.01 2.58 16 32 H 0.41 16.52 7.81 -92.71 -0.72 15.80 16 33 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 34 H 0.06 2.35 8.09 -2.38 -0.02 2.33 16 35 H 0.26 13.94 8.32 -92.72 -0.77 13.17 16 36 H 0.09 3.20 8.14 -2.38 -0.02 3.18 16 37 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 38 H 0.07 3.48 7.62 -2.39 -0.02 3.47 16 39 H 0.08 3.19 8.14 -2.38 -0.02 3.17 16 40 H 0.17 1.90 8.02 -2.39 -0.02 1.88 16 41 H 0.10 2.92 5.32 -2.73 -0.01 2.90 16 42 H 0.12 1.83 8.14 -2.39 -0.02 1.82 16 43 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.07 1.84 7.47 -2.39 -0.02 1.82 16 Total: -1.00 -61.08 359.16 2.82 -58.26 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: 0.27 Total: 33.23 kcal Atomic # 6 Polarization: -7.07 SS G_CDS: 5.18 Total: -1.89 kcal Atomic # 7 Polarization: -90.87 SS G_CDS: -4.58 Total: -95.44 kcal Atomic # 8 Polarization: -39.27 SS G_CDS: -0.08 Total: -39.35 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -61.08 2.82 -58.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261227276.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.336 kcal (2) G-P(sol) polarization free energy of solvation -61.080 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds