Wall clock time and date at job start Tue Mar 31 2020 06:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 119.99670 * 2 1 4 4 N 1.46504 * 109.46952 * 125.00020 * 3 2 1 5 5 C 1.34782 * 119.99785 * 89.99799 * 4 3 2 6 6 O 1.21345 * 119.99996 * 355.29948 * 5 4 3 7 7 C 1.49448 * 119.99675 * 175.30344 * 5 4 3 8 8 O 1.21348 * 120.00396 * 83.26203 * 7 5 4 9 9 N 1.34777 * 119.99804 * 263.25626 * 7 5 4 10 10 C 1.46502 * 119.99832 * 175.33039 * 9 7 5 11 11 C 1.53001 * 109.47107 * 184.60477 * 10 9 7 12 12 C 1.50697 * 115.55042 * 304.50273 * 11 10 9 13 13 H 1.08006 * 120.00029 * 144.22133 * 12 11 10 14 14 C 1.37874 * 120.00002 * 324.21560 * 12 11 10 15 15 N 1.31508 * 120.00064 * 3.26736 * 14 12 11 16 16 Si 1.86805 * 120.00120 * 183.26843 * 14 12 11 17 17 H 1.48501 * 109.46724 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47277 * 119.99792 * 16 14 12 19 19 H 1.48502 * 109.47023 * 240.00054 * 16 14 12 20 20 C 1.52999 * 117.49806 * 158.82997 * 11 10 9 21 21 C 1.53006 * 117.49799 * 90.16880 * 11 10 9 22 22 C 1.46497 * 120.00356 * 270.00017 * 4 3 2 23 23 C 1.53002 * 109.46984 * 304.47843 * 22 4 3 24 24 C 1.53005 * 109.46876 * 64.47553 * 22 4 3 25 25 H 1.08006 * 120.00176 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.00118 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.00118 * 180.02562 * 2 1 3 28 28 H 1.08992 * 109.47620 * 5.00607 * 3 2 1 29 29 H 1.08998 * 109.47269 * 245.00013 * 3 2 1 30 30 H 0.96998 * 120.00333 * 355.05905 * 9 7 5 31 31 H 1.08993 * 109.47360 * 304.60491 * 10 9 7 32 32 H 1.08993 * 109.47052 * 64.60808 * 10 9 7 33 33 H 0.97002 * 120.00610 * 185.00187 * 15 14 12 34 34 H 1.08993 * 117.49892 * 0.02562 * 20 11 10 35 35 H 1.09004 * 117.49921 * 145.02559 * 20 11 10 36 36 H 1.08998 * 117.50313 * 214.97911 * 21 11 10 37 37 H 1.09003 * 117.49656 * 359.97438 * 21 11 10 38 38 H 1.08995 * 109.47551 * 184.47547 * 22 4 3 39 39 H 1.09003 * 109.46932 * 59.99625 * 23 22 4 40 40 H 1.08998 * 109.46793 * 179.97438 * 23 22 4 41 41 H 1.09002 * 109.46869 * 299.99638 * 23 22 4 42 42 H 1.09003 * 109.47259 * 60.00248 * 24 22 4 43 43 H 1.09002 * 109.46880 * 179.97438 * 24 22 4 44 44 H 1.08997 * 109.47230 * 299.99812 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.2497 0.8662 0.9824 6 8 4.5842 0.3469 -0.0621 7 6 5.2302 0.9892 2.1035 8 8 5.2409 0.1644 2.9935 9 7 6.1026 2.0163 2.1260 10 6 6.9942 2.1950 3.2747 11 6 7.7945 3.4876 3.1029 12 6 8.5833 3.5985 1.8237 13 1 8.6863 4.5557 1.3340 14 6 9.1735 2.4782 1.2784 15 7 8.9950 1.3021 1.8390 16 14 10.2270 2.6309 -0.2567 17 1 10.2693 4.0510 -0.6887 18 1 11.6044 2.1618 0.0395 19 1 9.6441 1.8011 -1.3416 20 6 8.3953 4.1189 4.3604 21 6 7.1925 4.7725 3.6754 22 6 2.5588 1.8649 2.4249 23 6 2.0323 3.2893 2.2386 24 6 1.4471 0.9805 2.9931 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0897 29 1 2.6212 1.4027 -0.9314 30 1 6.1430 2.6348 1.3800 31 1 6.4026 2.2526 4.1883 32 1 7.6790 1.3494 3.3381 33 1 9.4676 0.5260 1.4994 34 1 8.2209 3.6131 5.3100 35 1 9.3610 4.6148 4.2624 36 1 7.3674 5.6982 3.1270 37 1 6.2262 4.6970 4.1740 38 1 3.4022 1.8766 3.1152 39 1 1.1889 3.2775 1.5482 40 1 1.7084 3.6857 3.2009 41 1 2.8244 3.9193 1.8338 42 1 1.8221 -0.0344 3.1259 43 1 1.1238 1.3768 3.9557 44 1 0.6036 0.9687 2.3029 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324831078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:00 Heat of formation + Delta-G solvation = -21.796843 kcal Electronic energy + Delta-G solvation = -24867.815445 eV Core-core repulsion = 21400.976913 eV Total energy + Delta-G solvation = -3466.838532 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.41253 -38.26222 -36.89187 -36.62376 -34.07350 -33.19965 -32.21874 -31.47846 -27.72086 -27.20775 -26.06226 -25.42105 -22.93096 -21.50142 -21.24865 -20.21196 -19.41243 -18.70352 -17.76505 -16.51581 -16.32252 -15.74800 -15.47701 -14.84621 -14.63644 -14.26949 -14.07137 -13.98178 -13.86381 -13.35452 -13.14228 -12.98258 -12.73746 -12.33017 -12.16530 -12.07262 -11.83451 -11.57142 -11.46806 -11.23300 -11.10815 -10.99960 -10.84131 -10.75756 -10.54412 -10.30534 -9.76207 -9.54798 -9.09537 -8.93656 -8.86397 -8.76479 -8.35468 -8.04985 -6.04617 -4.23924 1.99515 2.53631 2.80582 3.22661 3.24373 3.33731 3.35223 3.97846 4.29757 4.66303 4.78036 4.83975 4.96318 5.03516 5.14144 5.21882 5.36599 5.43101 5.49481 5.52168 5.64856 5.70505 5.78633 5.85300 5.93956 6.01931 6.19517 6.22380 6.36358 6.45839 6.47086 6.52668 6.60492 6.65292 6.81514 6.99514 7.19089 7.26197 7.36987 7.54510 7.91966 8.09275 8.24477 8.27371 8.76773 8.81328 9.41188 10.86006 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017645 B = 0.004970 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.438032 B = 5632.809662 C = 6420.366776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.156 4.156 3 C 0.137 3.863 4 N -0.593 5.593 5 C 0.515 3.485 6 O -0.513 6.513 7 C 0.506 3.494 8 O -0.538 6.538 9 N -0.658 5.658 10 C 0.159 3.841 11 C 0.035 3.965 12 C -0.500 4.500 13 H 0.063 0.937 14 C 0.074 3.926 15 N -0.868 5.868 16 Si 0.894 3.106 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.281 1.281 20 C -0.196 4.196 21 C -0.211 4.211 22 C 0.128 3.872 23 C -0.163 4.163 24 C -0.162 4.162 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.111 0.889 28 H 0.086 0.914 29 H 0.093 0.907 30 H 0.404 0.596 31 H 0.027 0.973 32 H 0.121 0.879 33 H 0.264 0.736 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.068 0.932 38 H 0.095 0.905 39 H 0.059 0.941 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.894 2.736 0.031 16.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.175 4.175 3 C 0.015 3.985 4 N -0.328 5.328 5 C 0.298 3.702 6 O -0.386 6.386 7 C 0.285 3.715 8 O -0.416 6.416 9 N -0.306 5.306 10 C 0.037 3.963 11 C 0.035 3.965 12 C -0.537 4.537 13 H 0.081 0.919 14 C -0.130 4.130 15 N -0.504 5.504 16 Si 0.721 3.279 17 H -0.197 1.197 18 H -0.208 1.208 19 H -0.207 1.207 20 C -0.235 4.235 21 C -0.248 4.248 22 C 0.024 3.976 23 C -0.220 4.220 24 C -0.220 4.220 25 H 0.116 0.884 26 H 0.114 0.886 27 H 0.129 0.871 28 H 0.105 0.895 29 H 0.111 0.889 30 H 0.239 0.761 31 H 0.045 0.955 32 H 0.138 0.862 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.113 0.887 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.084 0.916 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -15.652 1.682 0.052 15.742 hybrid contribution 0.679 0.260 -1.059 1.285 sum -14.973 1.942 -1.008 15.132 Atomic orbital electron populations 1.23777 0.95569 1.01791 1.01643 1.23357 0.96078 0.99370 0.98717 1.20612 0.92163 0.95414 0.90264 1.48084 1.11083 1.61580 1.12098 1.20908 0.82792 0.78171 0.88297 1.90763 1.78314 1.41779 1.27775 1.19731 0.83038 0.83115 0.85615 1.90743 1.73079 1.40580 1.37214 1.45740 1.35059 1.26724 1.23053 1.21299 0.90702 1.00943 0.83383 1.19206 0.96176 0.88014 0.93146 1.20546 1.32706 0.94521 1.05914 0.91927 1.25004 0.95943 0.94971 0.97106 1.69800 1.40197 0.99217 1.41200 0.86500 0.80217 0.78253 0.82922 1.19707 1.20795 1.20741 1.22944 0.96443 1.06449 0.97661 1.22954 0.95936 0.99335 1.06573 1.21257 0.98808 0.93415 0.84085 1.22173 1.01700 0.95514 1.02659 1.22201 0.98354 1.00445 1.00990 0.88420 0.88574 0.87129 0.89540 0.88858 0.76084 0.95474 0.86177 0.92484 0.91406 0.90120 0.90569 0.91342 0.88663 0.92176 0.91070 0.91572 0.91930 0.91523 0.91848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.68 13.24 29.01 0.38 -1.29 16 2 C -0.16 -1.77 8.63 -36.03 -0.31 -2.08 16 3 C 0.14 1.62 5.36 -5.19 -0.03 1.60 16 4 N -0.59 -8.54 2.39 -167.98 -0.40 -8.94 16 5 C 0.52 9.85 7.51 -11.58 -0.09 9.76 16 6 O -0.51 -11.23 16.72 5.50 0.09 -11.14 16 7 C 0.51 10.82 5.60 -11.59 -0.06 10.76 16 8 O -0.54 -12.87 16.97 5.50 0.09 -12.77 16 9 N -0.66 -14.12 5.27 -60.73 -0.32 -14.44 16 10 C 0.16 3.64 4.61 -4.04 -0.02 3.62 16 11 C 0.04 0.80 2.05 -155.66 -0.32 0.48 16 12 C -0.50 -12.49 8.34 -34.44 -0.29 -12.78 16 13 H 0.06 1.57 7.82 -52.48 -0.41 1.16 16 14 C 0.07 1.91 5.35 -17.82 -0.10 1.81 16 15 N -0.87 -23.31 10.22 55.43 0.57 -22.75 16 16 Si 0.89 20.48 29.54 -169.99 -5.02 15.45 16 17 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 20 C -0.20 -4.10 9.96 -26.69 -0.27 -4.37 16 21 C -0.21 -4.14 9.93 -26.69 -0.27 -4.40 16 22 C 0.13 1.58 3.17 -67.93 -0.22 1.37 16 23 C -0.16 -1.56 9.08 37.16 0.34 -1.22 16 24 C -0.16 -1.74 8.76 37.16 0.33 -1.42 16 25 H 0.10 0.78 8.06 -52.48 -0.42 0.36 16 26 H 0.10 0.70 7.84 -52.49 -0.41 0.29 16 27 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 28 H 0.09 0.78 5.85 -51.93 -0.30 0.48 16 29 H 0.09 1.21 7.49 -51.93 -0.39 0.82 16 30 H 0.40 8.54 7.98 -40.82 -0.33 8.21 16 31 H 0.03 0.59 8.10 -51.93 -0.42 0.17 16 32 H 0.12 3.19 5.84 -51.93 -0.30 2.88 16 33 H 0.26 7.01 8.32 -40.82 -0.34 6.67 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 36 H 0.08 1.47 8.14 -51.93 -0.42 1.04 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.80 16 38 H 0.10 1.40 6.12 -51.93 -0.32 1.09 16 39 H 0.06 0.48 6.53 -51.93 -0.34 0.15 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.60 6.09 -51.93 -0.32 0.28 16 LS Contribution 363.24 15.07 5.47 5.47 Total: -1.00 -29.38 363.24 -7.33 -36.71 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -6.90 Total: 10.57 kcal Atomic # 6 Polarization: 2.75 SS G_CDS: -0.91 Total: 1.84 kcal Atomic # 7 Polarization: -45.97 SS G_CDS: -0.15 Total: -46.13 kcal Atomic # 8 Polarization: -24.10 SS G_CDS: 0.19 Total: -23.92 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.38 -7.33 -36.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324831078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.908 kcal (2) G-P(sol) polarization free energy of solvation -29.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds