Wall clock time and date at job start Tue Mar 31 2020 06:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 119.99670 * 2 1 4 4 N 1.46504 * 109.46952 * 125.00020 * 3 2 1 5 5 C 1.34782 * 119.99785 * 89.99799 * 4 3 2 6 6 O 1.21345 * 119.99996 * 355.29948 * 5 4 3 7 7 C 1.49448 * 119.99675 * 175.30344 * 5 4 3 8 8 O 1.21348 * 120.00396 * 83.26203 * 7 5 4 9 9 N 1.34777 * 119.99804 * 263.25626 * 7 5 4 10 10 C 1.46502 * 119.99832 * 175.33039 * 9 7 5 11 11 C 1.53001 * 109.47107 * 184.60477 * 10 9 7 12 12 C 1.50697 * 115.55042 * 304.50273 * 11 10 9 13 13 H 1.08006 * 120.00029 * 144.22133 * 12 11 10 14 14 C 1.37874 * 120.00002 * 324.21560 * 12 11 10 15 15 N 1.31508 * 120.00064 * 3.26736 * 14 12 11 16 16 Si 1.86805 * 120.00120 * 183.26843 * 14 12 11 17 17 H 1.48501 * 109.46724 * 359.97438 * 16 14 12 18 18 H 1.48495 * 109.47277 * 119.99792 * 16 14 12 19 19 H 1.48502 * 109.47023 * 240.00054 * 16 14 12 20 20 C 1.52999 * 117.49806 * 158.82997 * 11 10 9 21 21 C 1.53006 * 117.49799 * 90.16880 * 11 10 9 22 22 C 1.46497 * 120.00356 * 270.00017 * 4 3 2 23 23 C 1.53002 * 109.46984 * 304.47843 * 22 4 3 24 24 C 1.53005 * 109.46876 * 64.47553 * 22 4 3 25 25 H 1.08006 * 120.00176 * 179.97438 * 1 2 3 26 26 H 1.07997 * 120.00118 * 359.97438 * 1 2 3 27 27 H 1.07997 * 120.00118 * 180.02562 * 2 1 3 28 28 H 1.08992 * 109.47620 * 5.00607 * 3 2 1 29 29 H 1.08998 * 109.47269 * 245.00013 * 3 2 1 30 30 H 0.96998 * 120.00333 * 355.05905 * 9 7 5 31 31 H 1.08993 * 109.47360 * 304.60491 * 10 9 7 32 32 H 1.08993 * 109.47052 * 64.60808 * 10 9 7 33 33 H 0.97002 * 120.00610 * 185.00187 * 15 14 12 34 34 H 1.08993 * 117.49892 * 0.02562 * 20 11 10 35 35 H 1.09004 * 117.49921 * 145.02559 * 20 11 10 36 36 H 1.08998 * 117.50313 * 214.97911 * 21 11 10 37 37 H 1.09003 * 117.49656 * 359.97438 * 21 11 10 38 38 H 1.08995 * 109.47551 * 184.47547 * 22 4 3 39 39 H 1.09003 * 109.46932 * 59.99625 * 23 22 4 40 40 H 1.08998 * 109.46793 * 179.97438 * 23 22 4 41 41 H 1.09002 * 109.46869 * 299.99638 * 23 22 4 42 42 H 1.09003 * 109.47259 * 60.00248 * 24 22 4 43 43 H 1.09002 * 109.46880 * 179.97438 * 24 22 4 44 44 H 1.08997 * 109.47230 * 299.99812 * 24 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3051 0.0000 4 7 2.9937 1.3319 1.1315 5 6 4.2497 0.8662 0.9824 6 8 4.5842 0.3469 -0.0621 7 6 5.2302 0.9892 2.1035 8 8 5.2409 0.1644 2.9935 9 7 6.1026 2.0163 2.1260 10 6 6.9942 2.1950 3.2747 11 6 7.7945 3.4876 3.1029 12 6 8.5833 3.5985 1.8237 13 1 8.6863 4.5557 1.3340 14 6 9.1735 2.4782 1.2784 15 7 8.9950 1.3021 1.8390 16 14 10.2270 2.6309 -0.2567 17 1 10.2693 4.0510 -0.6887 18 1 11.6044 2.1618 0.0395 19 1 9.6441 1.8011 -1.3416 20 6 8.3953 4.1189 4.3604 21 6 7.1925 4.7725 3.6754 22 6 2.5588 1.8649 2.4249 23 6 2.0323 3.2893 2.2386 24 6 1.4471 0.9805 2.9931 25 1 -0.5401 -0.9353 -0.0004 26 1 -0.5400 0.9353 0.0004 27 1 1.8500 -0.9353 -0.0004 28 1 1.3586 2.1316 0.0897 29 1 2.6212 1.4027 -0.9314 30 1 6.1430 2.6348 1.3800 31 1 6.4026 2.2526 4.1883 32 1 7.6790 1.3494 3.3381 33 1 9.4676 0.5260 1.4994 34 1 8.2209 3.6131 5.3100 35 1 9.3610 4.6148 4.2624 36 1 7.3674 5.6982 3.1270 37 1 6.2262 4.6970 4.1740 38 1 3.4022 1.8766 3.1152 39 1 1.1889 3.2775 1.5482 40 1 1.7084 3.6857 3.2009 41 1 2.8244 3.9193 1.8338 42 1 1.8221 -0.0344 3.1259 43 1 1.1238 1.3768 3.9557 44 1 0.6036 0.9687 2.3029 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324831078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:51:59 Heat of formation + Delta-G solvation = -39.850232 kcal Electronic energy + Delta-G solvation = -24868.598299 eV Core-core repulsion = 21400.976913 eV Total energy + Delta-G solvation = -3467.621386 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.87898 -39.85464 -38.43789 -38.12782 -35.00611 -34.89054 -34.16299 -32.55520 -29.05736 -28.13076 -27.68182 -27.09714 -24.35069 -22.96034 -22.59171 -21.25165 -21.16596 -20.15597 -19.10480 -18.22112 -17.79926 -17.29016 -16.74878 -16.67546 -16.01510 -15.73176 -15.56337 -15.24121 -15.04128 -14.81859 -14.44698 -14.29574 -14.07655 -13.68051 -13.37748 -13.24291 -13.07303 -12.99313 -12.92206 -12.61247 -12.46359 -12.43517 -12.29358 -12.09559 -12.02467 -11.84904 -11.53473 -10.93163 -10.75818 -10.61087 -10.29427 -10.18079 -9.95047 -9.86107 -7.99589 -6.23172 0.98805 1.05363 1.38402 1.40405 1.44744 1.52227 1.74159 2.39080 2.57496 3.03338 3.47923 3.67735 3.74332 3.95034 4.08321 4.16646 4.23998 4.25910 4.47963 4.53136 4.61141 4.72124 4.74285 4.77289 4.78695 4.93749 4.98104 4.99725 5.02840 5.10869 5.18241 5.29742 5.35349 5.39417 5.50720 5.60573 5.63381 5.67227 5.77765 5.96361 6.00838 6.34087 6.50923 6.68697 6.83021 7.07847 7.43046 8.87514 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.017645 B = 0.004970 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.438032 B = 5632.809662 C = 6420.366776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.190 4.190 3 C 0.136 3.864 4 N -0.575 5.575 5 C 0.514 3.486 6 O -0.553 6.553 7 C 0.505 3.495 8 O -0.570 6.570 9 N -0.653 5.653 10 C 0.170 3.830 11 C 0.002 3.998 12 C -0.500 4.500 13 H 0.061 0.939 14 C 0.033 3.967 15 N -0.894 5.894 16 Si 0.944 3.056 17 H -0.262 1.262 18 H -0.283 1.283 19 H -0.293 1.293 20 C -0.195 4.195 21 C -0.179 4.179 22 C 0.118 3.882 23 C -0.155 4.155 24 C -0.154 4.154 25 H 0.108 0.892 26 H 0.125 0.875 27 H 0.080 0.920 28 H 0.126 0.874 29 H 0.077 0.923 30 H 0.405 0.595 31 H 0.036 0.964 32 H 0.082 0.918 33 H 0.256 0.744 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.090 0.910 41 H 0.056 0.944 42 H 0.035 0.965 43 H 0.088 0.912 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.743 4.949 0.127 19.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.209 4.209 3 C 0.015 3.985 4 N -0.308 5.308 5 C 0.297 3.703 6 O -0.430 6.430 7 C 0.285 3.715 8 O -0.451 6.451 9 N -0.300 5.300 10 C 0.047 3.953 11 C 0.001 3.999 12 C -0.538 4.538 13 H 0.079 0.921 14 C -0.168 4.168 15 N -0.532 5.532 16 Si 0.771 3.229 17 H -0.186 1.186 18 H -0.209 1.209 19 H -0.220 1.220 20 C -0.233 4.233 21 C -0.216 4.216 22 C 0.016 3.984 23 C -0.213 4.213 24 C -0.212 4.212 25 H 0.126 0.874 26 H 0.143 0.857 27 H 0.098 0.902 28 H 0.144 0.856 29 H 0.096 0.904 30 H 0.240 0.760 31 H 0.054 0.946 32 H 0.100 0.900 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.109 0.891 38 H 0.085 0.915 39 H 0.102 0.898 40 H 0.109 0.891 41 H 0.075 0.925 42 H 0.054 0.946 43 H 0.106 0.894 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.542 3.947 0.160 18.958 hybrid contribution 1.448 -0.398 -1.031 1.822 sum -17.093 3.549 -0.871 17.480 Atomic orbital electron populations 1.24052 0.94354 1.03649 0.96986 1.23093 0.96992 0.97822 1.03021 1.20871 0.91941 0.97251 0.88410 1.48187 1.09627 1.59199 1.13797 1.20490 0.84105 0.78771 0.86948 1.90739 1.79351 1.44181 1.28759 1.20197 0.83173 0.82311 0.85799 1.90705 1.73989 1.41593 1.38823 1.45677 1.34720 1.26829 1.22750 1.21000 0.90273 0.99799 0.84204 1.19224 0.97815 0.89498 0.93332 1.20775 1.32256 0.94092 1.06638 0.92119 1.25576 0.97158 0.94897 0.99176 1.69994 1.41204 0.99502 1.42460 0.85718 0.78756 0.78331 0.80142 1.18560 1.20939 1.21961 1.22958 0.97072 1.06123 0.97192 1.22957 0.96346 0.97639 1.04708 1.21526 0.98526 0.95897 0.82490 1.22144 1.02037 0.92655 1.04423 1.22155 0.97988 0.98554 1.02516 0.87377 0.85696 0.90213 0.85585 0.90430 0.75967 0.94595 0.89993 0.93411 0.90267 0.90461 0.89750 0.89107 0.91481 0.89750 0.89092 0.92528 0.94587 0.89360 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 13.24 67.78 0.90 -1.25 16 2 C -0.19 -4.06 8.63 25.64 0.22 -3.84 16 3 C 0.14 2.99 5.36 85.63 0.46 3.45 16 4 N -0.58 -16.33 2.39 -803.72 -1.92 -18.25 16 5 C 0.51 20.38 7.51 87.27 0.66 21.03 16 6 O -0.55 -25.42 16.72 -3.23 -0.05 -25.47 16 7 C 0.50 22.48 5.60 87.27 0.49 22.97 16 8 O -0.57 -28.62 16.97 -3.24 -0.06 -28.67 16 9 N -0.65 -28.80 5.27 -464.42 -2.45 -31.24 16 10 C 0.17 7.94 4.61 86.38 0.40 8.34 16 11 C 0.00 0.09 2.05 -52.93 -0.11 -0.02 16 12 C -0.50 -24.98 8.34 25.60 0.21 -24.76 16 13 H 0.06 3.00 7.82 -2.91 -0.02 2.97 16 14 C 0.03 1.73 5.35 84.65 0.45 2.18 16 15 N -0.89 -49.73 10.22 21.45 0.22 -49.51 16 16 Si 0.94 42.70 29.54 68.60 2.03 44.73 16 17 H -0.26 -11.25 7.11 99.48 0.71 -10.55 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 19 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 20 C -0.19 -7.88 9.96 30.62 0.30 -7.57 16 21 C -0.18 -6.61 9.93 30.62 0.30 -6.31 16 22 C 0.12 2.75 3.17 44.99 0.14 2.89 16 23 C -0.16 -2.42 9.08 71.98 0.65 -1.77 16 24 C -0.15 -2.98 8.76 71.98 0.63 -2.34 16 25 H 0.11 1.34 8.06 -2.91 -0.02 1.32 16 26 H 0.13 1.09 7.84 -2.91 -0.02 1.07 16 27 H 0.08 2.20 8.06 -2.91 -0.02 2.17 16 28 H 0.13 1.75 5.85 -2.39 -0.01 1.74 16 29 H 0.08 1.98 7.49 -2.39 -0.02 1.96 16 30 H 0.41 17.53 7.98 -92.71 -0.74 16.79 16 31 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 32 H 0.08 4.53 5.84 -2.39 -0.01 4.52 16 33 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 34 H 0.08 3.00 8.14 -2.39 -0.02 2.98 16 35 H 0.08 3.15 8.14 -2.38 -0.02 3.13 16 36 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.09 2.95 8.14 -2.39 -0.02 2.93 16 38 H 0.07 1.97 6.12 -2.39 -0.01 1.95 16 39 H 0.08 0.92 6.53 -2.39 -0.02 0.91 16 40 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.03 0.88 8.14 -2.39 -0.02 0.87 16 43 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.08 1.25 6.09 -2.39 -0.01 1.24 16 Total: -1.00 -66.88 363.24 3.74 -63.14 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: 0.25 Total: 32.27 kcal Atomic # 6 Polarization: 7.29 SS G_CDS: 5.71 Total: 13.01 kcal Atomic # 7 Polarization: -94.86 SS G_CDS: -4.15 Total: -99.00 kcal Atomic # 8 Polarization: -54.03 SS G_CDS: -0.11 Total: -54.14 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -66.88 3.74 -63.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324831078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.293 kcal (2) G-P(sol) polarization free energy of solvation -66.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds