Wall clock time and date at job start Tue Mar 31 2020 06:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47257 * 2 1 4 4 N 1.46497 * 109.47536 * 179.97438 * 3 2 1 5 5 N 1.28444 * 125.19728 * 270.26982 * 4 3 2 6 6 C 1.30871 * 110.94462 * 180.15982 * 5 4 3 7 7 C 1.39647 * 107.87862 * 359.60830 * 6 5 4 8 8 C 1.36654 * 125.19382 * 89.99500 * 4 3 2 9 9 C 1.47008 * 126.89553 * 359.97438 * 8 4 3 10 10 O 1.21544 * 120.00006 * 180.02562 * 9 8 4 11 11 O 1.34813 * 119.99875 * 359.97438 * 9 8 4 12 12 C 1.45198 * 117.00211 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47392 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46857 * 299.99505 * 13 12 11 15 15 C 1.52998 * 109.47261 * 59.99966 * 13 12 11 16 16 C 1.53004 * 109.47147 * 179.97438 * 13 12 11 17 17 C 1.50697 * 109.47250 * 180.02562 * 16 13 12 18 18 H 1.07997 * 120.00180 * 359.97438 * 17 16 13 19 19 C 1.37874 * 119.99853 * 180.02562 * 17 16 13 20 20 N 1.31514 * 120.00439 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00019 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46957 * 89.99725 * 21 19 17 23 23 H 1.48494 * 109.47202 * 209.99985 * 21 19 17 24 24 H 1.48503 * 109.46740 * 330.00437 * 21 19 17 25 25 H 1.09000 * 109.46926 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47416 * 300.00106 * 1 2 3 27 27 H 1.08994 * 109.47422 * 60.00170 * 1 2 3 28 28 H 1.08996 * 109.47209 * 239.99678 * 2 1 3 29 29 H 1.09006 * 109.47263 * 119.99439 * 2 1 3 30 30 H 1.09004 * 109.46994 * 59.99636 * 3 2 1 31 31 H 1.09006 * 109.46526 * 299.99890 * 3 2 1 32 32 H 1.08002 * 126.06310 * 179.87831 * 6 5 4 33 33 H 1.07998 * 127.31826 * 180.25096 * 7 6 5 34 34 H 1.09000 * 109.46653 * 300.00234 * 12 11 9 35 35 H 1.09001 * 109.47527 * 59.99371 * 12 11 9 36 36 H 1.08994 * 109.46770 * 60.00710 * 14 13 12 37 37 H 1.09004 * 109.46477 * 179.97438 * 14 13 12 38 38 H 1.08995 * 109.47343 * 299.99956 * 14 13 12 39 39 H 1.09000 * 109.47093 * 60.00169 * 15 13 12 40 40 H 1.09004 * 109.47045 * 179.97438 * 15 13 12 41 41 H 1.09002 * 109.46827 * 299.99944 * 15 13 12 42 42 H 1.09000 * 109.46837 * 300.00159 * 16 13 12 43 43 H 1.08995 * 109.46920 * 59.99570 * 16 13 12 44 44 H 0.97001 * 120.00261 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 7 4.2449 1.4378 1.0505 6 6 5.5134 1.4428 0.7289 7 6 5.6023 1.4425 -0.6648 8 6 4.2930 1.4424 -1.1158 9 6 3.8415 1.4415 -2.5148 10 8 4.6566 1.4409 -3.4165 11 8 2.5234 1.4403 -2.7977 12 6 2.1503 1.4389 -4.2009 13 6 0.6252 1.4383 -4.3232 14 6 0.0597 0.1894 -3.6440 15 6 0.0588 2.6879 -3.6462 16 6 0.2321 1.4375 -5.8019 17 6 -1.2700 1.4375 -5.9223 18 1 -1.8831 1.4377 -5.0332 19 6 -1.8617 1.4363 -7.1677 20 7 -1.1152 1.4356 -8.2504 21 14 -3.7238 1.4357 -7.3171 22 1 -4.2176 2.8356 -7.3577 23 1 -4.1200 0.7345 -8.5646 24 1 -4.3139 0.7365 -6.1473 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8901 32 1 6.3443 1.4423 1.4189 33 1 6.5012 1.4421 -1.2635 34 1 2.5529 2.3288 -4.6847 35 1 2.5542 0.5489 -4.6835 36 1 0.3397 0.1905 -2.5906 37 1 -1.0269 0.1893 -3.7307 38 1 0.4632 -0.7008 -4.1263 39 1 0.4617 3.5776 -4.1301 40 1 -1.0277 2.6877 -3.7337 41 1 0.3388 2.6889 -2.5927 42 1 0.6351 2.3274 -6.2854 43 1 0.6357 0.5475 -6.2846 44 1 -1.5316 1.4344 -9.1266 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343476253.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:02 Heat of formation + Delta-G solvation = -34.455454 kcal Electronic energy + Delta-G solvation = -24687.025564 eV Core-core repulsion = 21219.638113 eV Total energy + Delta-G solvation = -3467.387451 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.70942 -40.07486 -37.32026 -35.72971 -35.36236 -32.42610 -31.73452 -31.18257 -27.43483 -26.89125 -26.57174 -26.37300 -24.07359 -22.69777 -22.23746 -21.58426 -20.15884 -18.45729 -18.06690 -16.74962 -16.50970 -16.24934 -15.69047 -15.56324 -15.44124 -14.59107 -14.20317 -13.88336 -13.69284 -13.40865 -13.35055 -13.20848 -12.62423 -12.46587 -12.24161 -12.16159 -12.06522 -11.53979 -11.36944 -11.20295 -11.01260 -10.95266 -10.86761 -10.67203 -10.60769 -10.40687 -10.39276 -10.26500 -9.83746 -9.39902 -9.29363 -9.21482 -9.01792 -8.41850 -6.05934 -4.07550 0.96893 2.24682 2.41460 2.68544 2.92261 3.27550 3.34855 3.36456 4.26642 4.39785 4.57181 4.63453 4.79462 4.96241 5.11172 5.25526 5.29504 5.30596 5.38701 5.41270 5.42135 5.55435 5.64636 5.70600 5.83426 5.91818 5.93180 6.05051 6.10325 6.27131 6.30734 6.41015 6.46636 6.55682 6.60521 6.66530 7.01010 7.03076 7.04366 7.54465 7.65602 7.68383 7.89798 7.92194 8.33020 8.96689 9.55958 11.05637 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.003886 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.986988 B = 7204.464847 C = 8044.000299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.134 4.134 3 C 0.111 3.889 4 N -0.258 5.258 5 N -0.270 5.270 6 C -0.010 4.010 7 C -0.155 4.155 8 C -0.024 4.024 9 C 0.533 3.467 10 O -0.494 6.494 11 O -0.349 6.349 12 C 0.079 3.921 13 C -0.057 4.057 14 C -0.131 4.131 15 C -0.126 4.126 16 C 0.035 3.965 17 C -0.511 4.511 18 H 0.061 0.939 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.890 3.110 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.119 0.881 32 H 0.189 0.811 33 H 0.165 0.835 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.066 0.934 38 H 0.044 0.956 39 H 0.045 0.955 40 H 0.067 0.933 41 H 0.035 0.965 42 H 0.018 0.982 43 H 0.019 0.981 44 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.957 -0.794 17.738 19.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.172 4.172 3 C -0.008 4.008 4 N -0.048 5.048 5 N -0.104 5.104 6 C -0.185 4.185 7 C -0.184 4.184 8 C -0.149 4.149 9 C 0.376 3.624 10 O -0.380 6.380 11 O -0.266 6.266 12 C 0.006 3.994 13 C -0.057 4.057 14 C -0.188 4.188 15 C -0.183 4.183 16 C -0.002 4.002 17 C -0.549 4.549 18 H 0.079 0.921 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.718 3.282 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.119 0.881 31 H 0.137 0.863 32 H 0.206 0.794 33 H 0.183 0.817 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.063 0.937 37 H 0.085 0.915 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.054 0.946 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.270 -0.794 18.099 19.521 hybrid contribution -0.287 0.002 -1.134 1.170 sum 6.983 -0.792 16.965 18.363 Atomic orbital electron populations 1.21772 0.93568 1.02871 1.02841 1.21841 0.97501 0.94633 1.03227 1.22443 0.71997 1.00221 1.06131 1.46093 1.07884 1.48923 1.01880 1.73172 1.04336 1.18824 1.14023 1.23588 0.93555 1.06723 0.94653 1.22201 0.95398 1.05620 0.95173 1.20824 0.91838 1.15772 0.86479 1.19675 0.81959 0.73722 0.87081 1.90890 1.54996 1.45613 1.46548 1.86555 1.23755 1.83314 1.32943 1.23622 0.97811 1.02319 0.75654 1.20820 0.88340 0.96037 1.00530 1.21842 1.02148 0.96564 0.98278 1.21738 1.02218 0.96686 0.97687 1.19122 0.96858 0.97531 0.86672 1.21121 0.91187 1.50532 0.92041 0.92080 1.25008 0.97978 0.95433 0.96020 1.69959 1.35036 1.50687 0.97697 0.86627 0.85931 0.78085 0.77560 1.20717 1.21306 1.19857 0.91791 0.92499 0.90903 0.90783 0.91376 0.88128 0.86333 0.79417 0.81709 0.91301 0.91275 0.93733 0.91476 0.93722 0.93629 0.91381 0.94554 0.96331 0.96308 0.92959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.55 37.15 0.35 -1.01 16 2 C -0.13 -1.33 6.13 -26.73 -0.16 -1.49 16 3 C 0.11 1.16 5.78 -4.04 -0.02 1.14 16 4 N -0.26 -3.20 3.35 -57.15 -0.19 -3.39 16 5 N -0.27 -3.29 11.90 30.58 0.36 -2.93 16 6 C -0.01 -0.11 12.03 -17.43 -0.21 -0.32 16 7 C -0.16 -1.82 10.85 -38.97 -0.42 -2.24 16 8 C -0.02 -0.32 6.96 -82.07 -0.57 -0.89 16 9 C 0.53 8.33 7.93 34.28 0.27 8.60 16 10 O -0.49 -8.91 16.71 -19.30 -0.32 -9.23 16 11 O -0.35 -5.32 6.34 -40.80 -0.26 -5.58 16 12 C 0.08 1.36 4.33 37.16 0.16 1.52 16 13 C -0.06 -1.06 0.61 -154.51 -0.09 -1.16 16 14 C -0.13 -2.25 8.08 37.16 0.30 -1.94 16 15 C -0.13 -2.17 8.08 37.16 0.30 -1.87 16 16 C 0.04 0.84 4.04 -27.88 -0.11 0.73 16 17 C -0.51 -13.21 7.65 -34.44 -0.26 -13.47 16 18 H 0.06 1.51 5.68 -52.49 -0.30 1.22 16 19 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 20 N -0.89 -25.93 13.29 55.43 0.74 -25.20 16 21 Si 0.89 20.78 29.54 -169.99 -5.02 15.76 16 22 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.07 0.73 6.36 -51.93 -0.33 0.40 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.12 1.32 5.72 -51.93 -0.30 1.02 16 32 H 0.19 1.25 8.06 -52.49 -0.42 0.83 16 33 H 0.17 1.66 8.06 -52.49 -0.42 1.24 16 34 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.04 0.63 5.30 -51.93 -0.28 0.36 16 37 H 0.07 1.23 6.62 -51.93 -0.34 0.88 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.24 6.62 -51.93 -0.34 0.90 16 41 H 0.04 0.52 7.25 -51.93 -0.38 0.15 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 LS Contribution 357.45 15.07 5.39 5.39 Total: -1.00 -30.08 357.45 -6.77 -36.85 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -6.89 Total: -0.71 kcal Atomic # 6 Polarization: -10.39 SS G_CDS: -0.57 Total: -10.96 kcal Atomic # 7 Polarization: -32.42 SS G_CDS: 0.91 Total: -31.51 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: -0.58 Total: -14.81 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.08 -6.77 -36.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343476253.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.394 kcal (2) G-P(sol) polarization free energy of solvation -30.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds