Wall clock time and date at job start Tue Mar 31 2020 06:43:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47257 * 2 1 4 4 N 1.46497 * 109.47536 * 179.97438 * 3 2 1 5 5 N 1.28444 * 125.19728 * 270.26982 * 4 3 2 6 6 C 1.30871 * 110.94462 * 180.15982 * 5 4 3 7 7 C 1.39647 * 107.87862 * 359.60830 * 6 5 4 8 8 C 1.36654 * 125.19382 * 89.99500 * 4 3 2 9 9 C 1.47008 * 126.89553 * 359.97438 * 8 4 3 10 10 O 1.21544 * 120.00006 * 180.02562 * 9 8 4 11 11 O 1.34813 * 119.99875 * 359.97438 * 9 8 4 12 12 C 1.45198 * 117.00211 * 180.02562 * 11 9 8 13 13 C 1.52996 * 109.47392 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46857 * 299.99505 * 13 12 11 15 15 C 1.52998 * 109.47261 * 59.99966 * 13 12 11 16 16 C 1.53004 * 109.47147 * 179.97438 * 13 12 11 17 17 C 1.50697 * 109.47250 * 180.02562 * 16 13 12 18 18 H 1.07997 * 120.00180 * 359.97438 * 17 16 13 19 19 C 1.37874 * 119.99853 * 180.02562 * 17 16 13 20 20 N 1.31514 * 120.00439 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00019 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46957 * 89.99725 * 21 19 17 23 23 H 1.48494 * 109.47202 * 209.99985 * 21 19 17 24 24 H 1.48503 * 109.46740 * 330.00437 * 21 19 17 25 25 H 1.09000 * 109.46926 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47416 * 300.00106 * 1 2 3 27 27 H 1.08994 * 109.47422 * 60.00170 * 1 2 3 28 28 H 1.08996 * 109.47209 * 239.99678 * 2 1 3 29 29 H 1.09006 * 109.47263 * 119.99439 * 2 1 3 30 30 H 1.09004 * 109.46994 * 59.99636 * 3 2 1 31 31 H 1.09006 * 109.46526 * 299.99890 * 3 2 1 32 32 H 1.08002 * 126.06310 * 179.87831 * 6 5 4 33 33 H 1.07998 * 127.31826 * 180.25096 * 7 6 5 34 34 H 1.09000 * 109.46653 * 300.00234 * 12 11 9 35 35 H 1.09001 * 109.47527 * 59.99371 * 12 11 9 36 36 H 1.08994 * 109.46770 * 60.00710 * 14 13 12 37 37 H 1.09004 * 109.46477 * 179.97438 * 14 13 12 38 38 H 1.08995 * 109.47343 * 299.99956 * 14 13 12 39 39 H 1.09000 * 109.47093 * 60.00169 * 15 13 12 40 40 H 1.09004 * 109.47045 * 179.97438 * 15 13 12 41 41 H 1.09002 * 109.46827 * 299.99944 * 15 13 12 42 42 H 1.09000 * 109.46837 * 300.00159 * 16 13 12 43 43 H 1.08995 * 109.46920 * 59.99570 * 16 13 12 44 44 H 0.97001 * 120.00261 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 7 4.2449 1.4378 1.0505 6 6 5.5134 1.4428 0.7289 7 6 5.6023 1.4425 -0.6648 8 6 4.2930 1.4424 -1.1158 9 6 3.8415 1.4415 -2.5148 10 8 4.6566 1.4409 -3.4165 11 8 2.5234 1.4403 -2.7977 12 6 2.1503 1.4389 -4.2009 13 6 0.6252 1.4383 -4.3232 14 6 0.0597 0.1894 -3.6440 15 6 0.0588 2.6879 -3.6462 16 6 0.2321 1.4375 -5.8019 17 6 -1.2700 1.4375 -5.9223 18 1 -1.8831 1.4377 -5.0332 19 6 -1.8617 1.4363 -7.1677 20 7 -1.1152 1.4356 -8.2504 21 14 -3.7238 1.4357 -7.3171 22 1 -4.2176 2.8356 -7.3577 23 1 -4.1200 0.7345 -8.5646 24 1 -4.3139 0.7365 -6.1473 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6766 1.9564 0.8900 31 1 1.6766 1.9563 -0.8901 32 1 6.3443 1.4423 1.4189 33 1 6.5012 1.4421 -1.2635 34 1 2.5529 2.3288 -4.6847 35 1 2.5542 0.5489 -4.6835 36 1 0.3397 0.1905 -2.5906 37 1 -1.0269 0.1893 -3.7307 38 1 0.4632 -0.7008 -4.1263 39 1 0.4617 3.5776 -4.1301 40 1 -1.0277 2.6877 -3.7337 41 1 0.3388 2.6889 -2.5927 42 1 0.6351 2.3274 -6.2854 43 1 0.6357 0.5475 -6.2846 44 1 -1.5316 1.4344 -9.1266 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343476253.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:01 Heat of formation + Delta-G solvation = -49.884626 kcal Electronic energy + Delta-G solvation = -24687.694623 eV Core-core repulsion = 21219.638113 eV Total energy + Delta-G solvation = -3468.056510 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.62750 -41.37313 -38.79425 -37.04317 -36.33372 -34.41882 -32.57510 -32.19097 -29.30934 -28.14417 -27.98345 -27.39587 -25.55102 -24.29618 -23.05682 -22.48184 -21.24760 -19.94332 -19.22242 -18.38662 -17.86579 -17.71826 -16.73824 -16.59090 -16.49829 -16.29643 -15.29779 -15.22992 -14.89725 -14.75727 -14.47036 -14.23223 -14.02904 -13.93790 -13.81483 -13.13045 -12.98363 -12.91306 -12.74905 -12.64903 -12.41083 -12.30033 -12.23089 -12.08880 -11.95418 -11.93050 -11.74780 -11.61525 -11.39392 -11.01891 -10.89981 -10.51860 -10.36252 -10.09255 -8.14990 -6.22555 -0.10006 1.26801 1.43589 1.43887 1.49323 1.53710 1.55814 1.84182 2.44507 3.20214 3.31268 3.56308 3.84801 3.89159 3.92139 4.02107 4.10674 4.19752 4.28140 4.38626 4.50665 4.54330 4.57536 4.62843 4.72457 4.81131 4.86250 5.01344 5.05907 5.12692 5.14097 5.18641 5.24400 5.34814 5.42765 5.47263 5.48376 5.52616 5.59132 5.68314 5.76040 5.88246 6.27786 6.46483 6.91649 6.96829 7.45355 8.97671 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024406 B = 0.003886 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.986988 B = 7204.464847 C = 8044.000299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.107 3.893 4 N -0.259 5.259 5 N -0.278 5.278 6 C -0.002 4.002 7 C -0.152 4.152 8 C -0.051 4.051 9 C 0.536 3.464 10 O -0.525 6.525 11 O -0.337 6.337 12 C 0.088 3.912 13 C -0.051 4.051 14 C -0.124 4.124 15 C -0.121 4.121 16 C 0.040 3.960 17 C -0.512 4.512 18 H 0.074 0.926 19 C -0.003 4.003 20 N -0.938 5.938 21 Si 0.957 3.043 22 H -0.276 1.276 23 H -0.290 1.290 24 H -0.258 1.258 25 H 0.066 0.934 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.121 0.879 31 H 0.111 0.889 32 H 0.227 0.773 33 H 0.178 0.822 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.035 0.965 39 H 0.037 0.963 40 H 0.058 0.942 41 H 0.068 0.932 42 H -0.011 1.011 43 H -0.011 1.011 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.520 -0.740 20.725 22.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C -0.012 4.012 4 N -0.050 5.050 5 N -0.112 5.112 6 C -0.176 4.176 7 C -0.180 4.180 8 C -0.176 4.176 9 C 0.381 3.619 10 O -0.413 6.413 11 O -0.252 6.252 12 C 0.015 3.985 13 C -0.051 4.051 14 C -0.181 4.181 15 C -0.178 4.178 16 C 0.003 3.997 17 C -0.550 4.550 18 H 0.092 0.908 19 C -0.200 4.200 20 N -0.579 5.579 21 Si 0.783 3.217 22 H -0.202 1.202 23 H -0.216 1.216 24 H -0.182 1.182 25 H 0.085 0.915 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.139 0.861 31 H 0.129 0.871 32 H 0.243 0.757 33 H 0.195 0.805 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.054 0.946 39 H 0.056 0.944 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.007 0.993 43 H 0.007 0.993 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.819 -0.741 21.120 22.206 hybrid contribution -0.039 -0.016 -1.984 1.985 sum 6.780 -0.757 19.136 20.315 Atomic orbital electron populations 1.21756 0.92640 1.03207 1.03176 1.21776 0.98161 0.94148 1.02460 1.22591 0.71286 1.00600 1.06728 1.46248 1.08408 1.48892 1.01416 1.73189 1.05166 1.18941 1.13934 1.24217 0.93882 1.04899 0.94572 1.22547 0.95129 1.04257 0.96107 1.20746 0.92973 1.18201 0.85655 1.20016 0.81392 0.72661 0.87866 1.90876 1.55494 1.47287 1.47662 1.86546 1.24136 1.83366 1.31183 1.23269 0.96874 1.01523 0.76871 1.20608 0.89378 0.97872 0.97262 1.21777 1.01261 0.95172 0.99898 1.21678 1.01386 0.95318 0.99387 1.18983 0.96084 0.94645 0.90010 1.21532 0.92217 1.48888 0.92367 0.90772 1.25916 1.02824 0.95393 0.95855 1.70111 1.37107 1.52500 0.98220 0.85555 0.80202 0.78250 0.77718 1.20164 1.21643 1.18227 0.91496 0.90787 0.91873 0.92644 0.91030 0.86124 0.87089 0.75706 0.80471 0.92165 0.92220 0.90615 0.92384 0.94624 0.94413 0.92250 0.91304 0.99277 0.99285 0.93133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.55 71.98 0.69 -1.61 16 2 C -0.13 -2.26 6.13 30.59 0.19 -2.07 16 3 C 0.11 1.99 5.78 86.38 0.50 2.49 16 4 N -0.26 -5.89 3.35 -334.73 -1.12 -7.01 16 5 N -0.28 -6.02 11.90 -57.15 -0.68 -6.70 16 6 C 0.00 -0.03 12.03 85.18 1.02 1.00 16 7 C -0.15 -3.23 10.85 22.67 0.25 -2.99 16 8 C -0.05 -1.32 6.96 40.75 0.28 -1.03 16 9 C 0.54 16.57 7.93 70.12 0.56 17.13 16 10 O -0.52 -19.12 16.71 19.69 0.33 -18.79 16 11 O -0.34 -10.08 6.34 -57.25 -0.36 -10.44 16 12 C 0.09 3.10 4.33 71.98 0.31 3.41 16 13 C -0.05 -1.91 0.61 -52.18 -0.03 -1.94 16 14 C -0.12 -4.16 8.08 71.98 0.58 -3.58 16 15 C -0.12 -4.04 8.08 71.98 0.58 -3.46 16 16 C 0.04 1.98 4.04 29.85 0.12 2.10 16 17 C -0.51 -26.78 7.65 25.60 0.20 -26.58 16 18 H 0.07 3.62 5.68 -2.91 -0.02 3.60 16 19 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 20 N -0.94 -56.05 13.29 21.45 0.28 -55.76 16 21 Si 0.96 42.71 29.54 68.60 2.03 44.74 16 22 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 23 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 24 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 25 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 27 H 0.06 1.09 6.36 -2.39 -0.02 1.08 16 28 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.12 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.11 2.22 5.72 -2.38 -0.01 2.21 16 32 H 0.23 2.03 8.06 -2.91 -0.02 2.00 16 33 H 0.18 3.23 8.06 -2.91 -0.02 3.20 16 34 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 36 H 0.08 2.04 5.30 -2.39 -0.01 2.03 16 37 H 0.06 2.05 6.62 -2.38 -0.02 2.03 16 38 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.06 2.09 6.62 -2.38 -0.02 2.08 16 41 H 0.07 1.85 7.25 -2.39 -0.02 1.83 16 42 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 43 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 44 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -66.01 357.45 7.16 -58.85 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: 0.98 Total: 11.95 kcal Atomic # 6 Polarization: -22.54 SS G_CDS: 5.71 Total: -16.84 kcal Atomic # 7 Polarization: -67.95 SS G_CDS: -1.52 Total: -69.47 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.03 Total: -29.23 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -66.01 7.16 -58.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343476253.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.965 kcal (2) G-P(sol) polarization free energy of solvation -66.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds