Wall clock time and date at job start Tue Mar 31 2020 06:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48490 * 109.47339 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 120.00108 * 9 7 5 12 12 H 1.48504 * 109.46636 * 239.99667 * 9 7 5 13 13 O 1.45199 * 109.47039 * 295.00131 * 3 2 1 14 14 C 1.34233 * 117.00343 * 90.00377 * 13 3 2 15 15 O 1.20825 * 119.99677 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00210 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46881 * 179.97438 * 16 14 13 18 18 C 1.53007 * 109.46780 * 180.02562 * 17 16 14 19 19 N 1.46501 * 109.46977 * 180.02562 * 18 17 16 20 20 N 1.40085 * 126.03786 * 90.02333 * 19 18 17 21 21 C 1.30835 * 108.20909 * 180.02562 * 20 19 18 22 22 C 1.50697 * 125.89993 * 180.02562 * 21 20 19 23 23 C 1.39870 * 108.19698 * 0.02562 * 21 20 19 24 24 C 1.34946 * 126.03882 * 269.72149 * 19 18 17 25 25 C 1.50703 * 126.12506 * 359.97438 * 24 19 18 26 26 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 28 28 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 29 29 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 30 30 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 31 31 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 32 32 H 1.08990 * 109.47304 * 299.99978 * 16 14 13 33 33 H 1.08999 * 109.46899 * 60.00161 * 16 14 13 34 34 H 1.08990 * 109.47643 * 300.00395 * 17 16 14 35 35 H 1.08999 * 109.46713 * 60.00671 * 17 16 14 36 36 H 1.08995 * 109.47276 * 300.00082 * 18 17 16 37 37 H 1.08999 * 109.46958 * 60.00812 * 18 17 16 38 38 H 1.08994 * 109.47165 * 89.97611 * 22 21 20 39 39 H 1.09004 * 109.47081 * 209.97402 * 22 21 20 40 40 H 1.09004 * 109.47008 * 329.97282 * 22 21 20 41 41 H 1.08010 * 126.03140 * 180.02562 * 23 21 20 42 42 H 1.08997 * 109.46900 * 90.00544 * 25 24 19 43 43 H 1.09002 * 109.46804 * 210.00181 * 25 24 19 44 44 H 1.08992 * 109.47202 * 330.00285 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.5992 1.5338 0.1874 11 1 6.4051 1.6106 2.6036 12 1 6.4917 -0.5266 1.4610 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7255 -1.2560 15 8 -0.2193 2.7370 -0.2655 16 6 0.0073 3.4226 -2.5084 17 6 -1.3615 4.0591 -2.2591 18 6 -1.8342 4.7664 -3.5309 19 7 -3.1445 5.3764 -3.2921 20 7 -3.3753 6.6735 -2.8161 21 6 -4.6684 6.8546 -2.7334 22 6 -5.3566 8.1114 -2.2667 23 6 -5.3017 5.6802 -3.1529 24 6 -4.3425 4.7901 -3.4973 25 6 -4.5710 3.3926 -4.0129 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8899 31 1 3.8292 -0.0558 2.9526 32 1 0.7243 4.1969 -2.7809 33 1 -0.0713 2.6985 -3.3193 34 1 -2.0783 3.2846 -1.9868 35 1 -1.2831 4.7831 -1.4481 36 1 -1.1175 5.5409 -3.8037 37 1 -1.9126 4.0420 -4.3416 38 1 -5.5346 8.7663 -3.1196 39 1 -6.3082 7.8535 -1.8019 40 1 -4.7247 8.6236 -1.5409 41 1 -6.3681 5.5152 -3.1996 42 1 -4.6164 2.6986 -3.1737 43 1 -5.5106 3.3579 -4.5643 44 1 -3.7514 3.1105 -4.6737 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001343502798.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:45 Heat of formation + Delta-G solvation = -39.180246 kcal Electronic energy + Delta-G solvation = -23389.374654 eV Core-core repulsion = 19921.782321 eV Total energy + Delta-G solvation = -3467.592333 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.38414 -39.68212 -36.28008 -35.22103 -33.53049 -33.03809 -31.73729 -31.33873 -29.30089 -27.40798 -27.14596 -25.99224 -23.37194 -22.46901 -20.54393 -20.50570 -19.50135 -19.28536 -17.20685 -16.63868 -16.53216 -16.03111 -15.45888 -15.13774 -14.86898 -14.43899 -13.99922 -13.81265 -13.52167 -13.29914 -13.14571 -12.96848 -12.82217 -12.69039 -12.39306 -12.10102 -12.02506 -11.84615 -11.65560 -11.46063 -11.27404 -11.17124 -10.98427 -10.92673 -10.66603 -10.57385 -10.29094 -9.82787 -9.62585 -9.38220 -9.14604 -8.82098 -8.57866 -8.47776 -6.20625 -4.27621 1.76054 2.35433 2.67508 2.99296 3.21856 3.28797 3.33429 3.65130 4.30697 4.33012 4.44827 4.74012 4.80999 4.86689 4.94224 5.09012 5.11531 5.18469 5.24195 5.28219 5.44100 5.50183 5.52055 5.58345 5.68657 5.74548 5.86215 5.92373 6.10096 6.16147 6.19615 6.25898 6.42936 6.60620 6.83920 6.93518 6.95126 7.14112 7.24335 7.60153 7.68088 7.71667 7.93685 8.14033 8.62158 8.87763 9.37798 10.86285 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028440 B = 0.002732 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.277330 B =10247.589152 C =10566.425731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.135 4.135 3 C 0.220 3.780 4 H 0.047 0.953 5 C -0.521 4.521 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.911 3.089 10 H -0.270 1.270 11 H -0.282 1.282 12 H -0.281 1.281 13 O -0.357 6.357 14 C 0.451 3.549 15 O -0.517 6.517 16 C -0.114 4.114 17 C -0.123 4.123 18 C 0.132 3.868 19 N -0.365 5.365 20 N -0.295 5.295 21 C 0.068 3.932 22 C -0.071 4.071 23 C -0.277 4.277 24 C 0.086 3.914 25 C -0.094 4.094 26 H 0.033 0.967 27 H 0.052 0.948 28 H 0.031 0.969 29 H 0.041 0.959 30 H 0.108 0.892 31 H 0.266 0.734 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.144 0.856 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.418 7.564 -13.143 21.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.168 3.832 4 H 0.065 0.935 5 C -0.559 4.559 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.738 3.262 10 H -0.195 1.195 11 H -0.207 1.207 12 H -0.207 1.207 13 O -0.273 6.273 14 C 0.293 3.707 15 O -0.407 6.407 16 C -0.152 4.152 17 C -0.161 4.161 18 C 0.010 3.990 19 N -0.147 5.147 20 N -0.117 5.117 21 C -0.098 4.098 22 C -0.129 4.129 23 C -0.307 4.307 24 C -0.041 4.041 25 C -0.152 4.152 26 H 0.052 0.948 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.060 0.940 30 H 0.126 0.874 31 H 0.076 0.924 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.116 0.884 37 H 0.112 0.888 38 H 0.092 0.908 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.162 0.838 42 H 0.101 0.899 43 H 0.103 0.897 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -14.270 7.896 -12.498 20.547 hybrid contribution 0.157 -0.572 0.183 0.621 sum -14.112 7.323 -12.315 20.111 Atomic orbital electron populations 1.21853 0.98400 0.98941 1.00697 1.22012 0.92605 0.99391 1.03324 1.20676 0.95036 0.88755 0.78721 0.93543 1.21084 0.89695 1.38986 1.06136 0.91300 1.24899 0.99275 0.94768 0.95076 1.69903 1.35307 1.38004 1.09352 0.86231 0.83882 0.77883 0.78229 1.19481 1.20746 1.20704 1.86468 1.34259 1.62451 1.44133 1.23136 0.80918 0.77104 0.89502 1.90623 1.55542 1.58498 1.36018 1.21202 0.97236 1.00935 0.95846 1.21756 0.96022 1.00897 0.97443 1.21740 0.81160 0.97705 0.98354 1.48546 1.05365 1.10167 1.50633 1.77339 1.16897 0.96148 1.21322 1.22302 0.91159 0.96977 0.99367 1.20148 0.99415 0.92074 1.01301 1.21077 0.99696 0.94339 1.15541 1.21121 0.85944 0.96648 1.00382 1.20482 1.03321 0.89879 1.01563 0.94838 0.92852 0.95020 0.93997 0.87385 0.92432 0.87896 0.88137 0.90474 0.89938 0.88422 0.88758 0.90753 0.90577 0.90982 0.83846 0.89915 0.89740 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 8.57 37.16 0.32 -2.75 16 2 C -0.14 -3.34 5.49 -26.73 -0.15 -3.48 16 3 C 0.22 5.83 2.25 -27.88 -0.06 5.77 16 4 H 0.05 1.37 7.16 -51.93 -0.37 1.00 16 5 C -0.52 -14.53 8.90 -34.44 -0.31 -14.83 16 6 H 0.07 1.90 7.81 -52.49 -0.41 1.49 16 7 C 0.06 1.70 5.29 -17.82 -0.09 1.60 16 8 N -0.89 -25.08 11.31 55.43 0.63 -24.45 16 9 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 13 O -0.36 -8.27 9.81 -39.27 -0.39 -8.65 16 14 C 0.45 8.93 6.41 36.00 0.23 9.16 16 15 O -0.52 -11.69 13.12 -18.75 -0.25 -11.94 16 16 C -0.11 -1.49 5.81 -27.88 -0.16 -1.65 16 17 C -0.12 -1.54 4.83 -26.73 -0.13 -1.67 16 18 C 0.13 1.33 6.25 -4.04 -0.03 1.30 16 19 N -0.37 -4.56 3.61 -57.14 -0.21 -4.76 16 20 N -0.29 -4.22 12.58 33.67 0.42 -3.79 16 21 C 0.07 0.83 7.22 -82.41 -0.59 0.24 16 22 C -0.07 -0.60 10.45 36.00 0.38 -0.22 16 23 C -0.28 -3.08 10.65 -40.01 -0.43 -3.51 16 24 C 0.09 0.95 6.93 -82.26 -0.57 0.38 16 25 C -0.09 -0.70 10.12 36.01 0.36 -0.33 16 26 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 1.23 7.80 -51.93 -0.40 0.82 16 28 H 0.03 0.65 6.06 -51.93 -0.31 0.33 16 29 H 0.04 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.11 2.90 5.96 -51.93 -0.31 2.59 16 31 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.10 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 35 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 36 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 0.68 7.04 -51.93 -0.37 0.32 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.14 1.25 8.06 -52.48 -0.42 0.82 16 42 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.45 7.08 -51.93 -0.37 0.08 16 LS Contribution 363.31 15.07 5.48 5.48 Total: -1.00 -33.26 363.31 -7.73 -40.99 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -7.17 Total: 1.17 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -1.23 Total: -10.00 kcal Atomic # 7 Polarization: -33.85 SS G_CDS: 0.84 Total: -33.00 kcal Atomic # 8 Polarization: -19.96 SS G_CDS: -0.63 Total: -20.59 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.26 -7.73 -40.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343502798.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.813 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds