Wall clock time and date at job start Tue Mar 31 2020 06:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.46852 * 2 1 4 4 H 1.09001 * 109.47339 * 55.00145 * 3 2 1 5 5 C 1.50697 * 109.47299 * 175.00295 * 3 2 1 6 6 H 1.07991 * 120.00449 * 119.72229 * 5 3 2 7 7 C 1.37885 * 119.99686 * 300.00060 * 5 3 2 8 8 N 1.31516 * 119.99913 * 359.72095 * 7 5 3 9 9 Si 1.86798 * 119.99766 * 179.72528 * 7 5 3 10 10 H 1.48490 * 109.47339 * 359.97438 * 9 7 5 11 11 H 1.48493 * 109.47239 * 120.00108 * 9 7 5 12 12 H 1.48504 * 109.46636 * 239.99667 * 9 7 5 13 13 O 1.45199 * 109.47039 * 295.00131 * 3 2 1 14 14 C 1.34233 * 117.00343 * 90.00377 * 13 3 2 15 15 O 1.20825 * 119.99677 * 359.97438 * 14 13 3 16 16 C 1.50698 * 120.00210 * 179.97438 * 14 13 3 17 17 C 1.53002 * 109.46881 * 179.97438 * 16 14 13 18 18 C 1.53007 * 109.46780 * 180.02562 * 17 16 14 19 19 N 1.46501 * 109.46977 * 180.02562 * 18 17 16 20 20 N 1.40085 * 126.03786 * 90.02333 * 19 18 17 21 21 C 1.30835 * 108.20909 * 180.02562 * 20 19 18 22 22 C 1.50697 * 125.89993 * 180.02562 * 21 20 19 23 23 C 1.39870 * 108.19698 * 0.02562 * 21 20 19 24 24 C 1.34946 * 126.03882 * 269.72149 * 19 18 17 25 25 C 1.50703 * 126.12506 * 359.97438 * 24 19 18 26 26 H 1.08996 * 109.46556 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47079 * 299.99653 * 1 2 3 28 28 H 1.09002 * 109.47338 * 59.99974 * 1 2 3 29 29 H 1.08999 * 109.46664 * 240.00133 * 2 1 3 30 30 H 1.08991 * 109.47269 * 119.99497 * 2 1 3 31 31 H 0.97000 * 119.99651 * 180.02562 * 8 7 5 32 32 H 1.08990 * 109.47304 * 299.99978 * 16 14 13 33 33 H 1.08999 * 109.46899 * 60.00161 * 16 14 13 34 34 H 1.08990 * 109.47643 * 300.00395 * 17 16 14 35 35 H 1.08999 * 109.46713 * 60.00671 * 17 16 14 36 36 H 1.08995 * 109.47276 * 300.00082 * 18 17 16 37 37 H 1.08999 * 109.46958 * 60.00812 * 18 17 16 38 38 H 1.08994 * 109.47165 * 89.97611 * 22 21 20 39 39 H 1.09004 * 109.47081 * 209.97402 * 22 21 20 40 40 H 1.09004 * 109.47008 * 329.97282 * 22 21 20 41 41 H 1.08010 * 126.03140 * 180.02562 * 23 21 20 42 42 H 1.08997 * 109.46900 * 90.00544 * 25 24 19 43 43 H 1.09002 * 109.46804 * 210.00181 * 25 24 19 44 44 H 1.08992 * 109.47202 * 330.00285 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1473 1.8850 -0.6544 7 6 4.1433 0.8785 1.2279 8 7 3.4060 0.3419 2.1757 9 14 6.0053 0.8740 1.3777 10 1 6.5992 1.5338 0.1874 11 1 6.4051 1.6106 2.6036 12 1 6.4917 -0.5266 1.4610 13 8 1.6558 2.0917 -1.2407 14 6 0.4726 2.7255 -1.2560 15 8 -0.2193 2.7370 -0.2655 16 6 0.0073 3.4226 -2.5084 17 6 -1.3615 4.0591 -2.2591 18 6 -1.8342 4.7664 -3.5309 19 7 -3.1445 5.3764 -3.2921 20 7 -3.3753 6.6735 -2.8161 21 6 -4.6684 6.8546 -2.7334 22 6 -5.3566 8.1114 -2.2667 23 6 -5.3017 5.6802 -3.1529 24 6 -4.3425 4.7901 -3.4973 25 6 -4.5710 3.3926 -4.0129 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5137 0.8899 31 1 3.8292 -0.0558 2.9526 32 1 0.7243 4.1969 -2.7809 33 1 -0.0713 2.6985 -3.3193 34 1 -2.0783 3.2846 -1.9868 35 1 -1.2831 4.7831 -1.4481 36 1 -1.1175 5.5409 -3.8037 37 1 -1.9126 4.0420 -4.3416 38 1 -5.5346 8.7663 -3.1196 39 1 -6.3082 7.8535 -1.8019 40 1 -4.7247 8.6236 -1.5409 41 1 -6.3681 5.5152 -3.1996 42 1 -4.6164 2.6986 -3.1737 43 1 -5.5106 3.3579 -4.5643 44 1 -3.7514 3.1105 -4.6737 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001343502798.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:44 Heat of formation + Delta-G solvation = -58.218306 kcal Electronic energy + Delta-G solvation = -23390.200207 eV Core-core repulsion = 19921.782321 eV Total energy + Delta-G solvation = -3468.417885 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.21679 -41.37649 -37.90595 -36.36231 -35.50657 -33.94794 -33.34898 -32.50374 -30.22385 -29.28780 -27.88395 -27.07743 -25.23000 -23.68989 -22.18607 -21.33413 -21.13155 -20.21000 -18.89670 -18.47789 -17.64906 -17.46904 -16.95898 -16.28713 -16.15491 -16.04687 -14.96109 -14.81498 -14.75749 -14.60734 -14.20743 -13.97205 -13.91238 -13.73519 -13.40743 -13.32692 -13.24224 -13.15579 -12.96891 -12.90184 -12.82507 -12.70431 -12.57287 -12.48721 -12.14198 -11.91213 -11.77254 -11.45684 -11.42296 -11.24676 -10.82587 -10.54219 -10.01441 -9.41665 -8.29279 -6.46024 0.91326 1.39454 1.40737 1.41974 1.53625 1.56662 1.84557 2.11216 2.42710 3.00525 3.55710 3.70881 3.76039 3.86819 3.93623 4.17988 4.24528 4.34534 4.36003 4.38555 4.40640 4.53585 4.56021 4.62671 4.74822 4.77995 4.81392 4.83011 4.86048 5.00562 5.02746 5.06856 5.08174 5.16880 5.20453 5.36348 5.39415 5.51038 5.66487 5.80823 5.98732 6.14938 6.18541 6.60235 6.82341 7.01954 7.26545 8.77736 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.028440 B = 0.002732 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.277330 B =10247.589152 C =10566.425731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.129 4.129 3 C 0.224 3.776 4 H 0.002 0.998 5 C -0.549 4.549 6 H 0.066 0.934 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.981 3.019 10 H -0.263 1.263 11 H -0.278 1.278 12 H -0.271 1.271 13 O -0.364 6.364 14 C 0.441 3.559 15 O -0.551 6.551 16 C -0.099 4.099 17 C -0.110 4.110 18 C 0.134 3.866 19 N -0.378 5.378 20 N -0.344 5.344 21 C 0.055 3.945 22 C -0.070 4.070 23 C -0.294 4.294 24 C 0.082 3.918 25 C -0.093 4.093 26 H 0.061 0.939 27 H 0.030 0.970 28 H 0.041 0.959 29 H 0.048 0.952 30 H 0.083 0.917 31 H 0.270 0.730 32 H 0.127 0.873 33 H 0.142 0.858 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.105 0.895 37 H 0.132 0.868 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.065 0.935 41 H 0.164 0.836 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.650 7.091 -15.413 23.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.167 4.167 3 C 0.170 3.830 4 H 0.020 0.980 5 C -0.586 4.586 6 H 0.085 0.915 7 C -0.184 4.184 8 N -0.554 5.554 9 Si 0.804 3.196 10 H -0.187 1.187 11 H -0.203 1.203 12 H -0.196 1.196 13 O -0.281 6.281 14 C 0.286 3.714 15 O -0.443 6.443 16 C -0.137 4.137 17 C -0.149 4.149 18 C 0.013 3.987 19 N -0.160 5.160 20 N -0.167 5.167 21 C -0.111 4.111 22 C -0.128 4.128 23 C -0.323 4.323 24 C -0.046 4.046 25 C -0.151 4.151 26 H 0.080 0.920 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.067 0.933 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.145 0.855 33 H 0.160 0.840 34 H 0.085 0.915 35 H 0.065 0.935 36 H 0.123 0.877 37 H 0.150 0.850 38 H 0.107 0.893 39 H 0.113 0.887 40 H 0.084 0.916 41 H 0.182 0.818 42 H 0.101 0.899 43 H 0.122 0.878 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.521 7.435 -14.784 22.016 hybrid contribution 0.134 -0.386 0.911 0.998 sum -14.387 7.049 -13.874 21.193 Atomic orbital electron populations 1.21700 0.96207 1.00570 1.00071 1.21846 0.94515 0.98002 1.02326 1.20338 0.94482 0.89365 0.78779 0.98022 1.21380 0.90620 1.39874 1.06744 0.91547 1.25827 1.04279 0.93932 0.94406 1.70030 1.37384 1.38186 1.09780 0.85161 0.77714 0.78344 0.78361 1.18671 1.20335 1.19603 1.86457 1.36267 1.63105 1.42248 1.24513 0.79365 0.76173 0.91373 1.90615 1.56104 1.59538 1.38000 1.21339 0.97514 1.01763 0.93036 1.21601 0.95637 0.99759 0.97909 1.21850 0.80764 0.98457 0.97620 1.48737 1.06397 1.09916 1.50934 1.77264 1.18264 0.97841 1.23327 1.22934 0.90970 0.98463 0.98689 1.20262 0.99746 0.91026 1.01766 1.21467 1.00942 0.94120 1.15735 1.21783 0.85441 0.97986 0.99367 1.20618 1.05051 0.87489 1.01907 0.91955 0.95081 0.93991 0.93285 0.89869 0.92085 0.85488 0.84037 0.91530 0.93547 0.87700 0.84969 0.89303 0.88728 0.91639 0.81813 0.89929 0.87802 0.89397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.55 8.57 71.98 0.62 -4.94 16 2 C -0.13 -6.45 5.49 30.60 0.17 -6.28 16 3 C 0.22 12.18 2.25 29.85 0.07 12.25 16 4 H 0.00 0.12 7.16 -2.39 -0.02 0.11 16 5 C -0.55 -31.17 8.90 25.60 0.23 -30.94 16 6 H 0.07 3.70 7.81 -2.92 -0.02 3.67 16 7 C 0.02 0.84 5.29 84.66 0.45 1.29 16 8 N -0.92 -52.82 11.31 21.45 0.24 -52.58 16 9 Si 0.98 42.99 29.54 68.60 2.03 45.02 16 10 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 11 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 13 O -0.36 -16.97 9.81 -51.45 -0.50 -17.48 16 14 C 0.44 17.44 6.41 71.24 0.46 17.90 16 15 O -0.55 -25.73 13.12 21.97 0.29 -25.44 16 16 C -0.10 -2.37 5.81 29.85 0.17 -2.19 16 17 C -0.11 -2.66 4.83 30.60 0.15 -2.52 16 18 C 0.13 2.40 6.25 86.38 0.54 2.94 16 19 N -0.38 -9.02 3.61 -334.69 -1.21 -10.23 16 20 N -0.34 -9.88 12.58 -47.39 -0.60 -10.47 16 21 C 0.05 1.32 7.22 43.10 0.31 1.63 16 22 C -0.07 -1.14 10.45 71.24 0.74 -0.39 16 23 C -0.29 -6.18 10.65 21.99 0.23 -5.95 16 24 C 0.08 1.67 6.93 41.41 0.29 1.96 16 25 C -0.09 -1.11 10.12 71.24 0.72 -0.39 16 26 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.03 1.45 7.80 -2.39 -0.02 1.43 16 28 H 0.04 1.69 6.06 -2.39 -0.01 1.68 16 29 H 0.05 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.08 4.59 5.96 -2.39 -0.01 4.58 16 31 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 32 H 0.13 2.52 8.14 -2.39 -0.02 2.50 16 33 H 0.14 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.07 1.74 8.10 -2.39 -0.02 1.72 16 35 H 0.05 1.45 8.10 -2.39 -0.02 1.43 16 36 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 37 H 0.13 1.36 7.04 -2.39 -0.02 1.34 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.16 2.55 8.06 -2.91 -0.02 2.53 16 42 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.09 0.76 7.08 -2.39 -0.02 0.74 16 Total: -1.00 -76.12 363.31 6.36 -69.75 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: 0.97 Total: 17.06 kcal Atomic # 6 Polarization: -20.78 SS G_CDS: 5.14 Total: -15.63 kcal Atomic # 7 Polarization: -71.72 SS G_CDS: -1.56 Total: -73.28 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -0.22 Total: -42.91 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -76.12 6.36 -69.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001343502798.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.535 kcal (2) G-P(sol) polarization free energy of solvation -76.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds