Wall clock time and date at job start Tue Mar 31 2020 06:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47341 * 2 1 4 4 H 1.09001 * 109.47289 * 55.00475 * 3 2 1 5 5 C 1.53006 * 109.47127 * 295.00521 * 3 2 1 6 6 N 1.46500 * 109.47473 * 175.00148 * 3 2 1 7 7 N 1.28444 * 125.19210 * 60.02267 * 6 3 2 8 8 C 1.30873 * 110.94155 * 180.02562 * 7 6 3 9 9 C 1.39641 * 107.88259 * 0.02562 * 8 7 6 10 10 C 1.36648 * 125.19746 * 239.72022 * 6 3 2 11 11 C 1.47008 * 126.89504 * 359.97438 * 10 6 3 12 12 O 1.21549 * 119.99926 * 179.97438 * 11 10 6 13 13 O 1.34820 * 119.99702 * 359.97438 * 11 10 6 14 14 C 1.45196 * 116.99368 * 179.97438 * 13 11 10 15 15 C 1.53005 * 109.46911 * 180.02562 * 14 13 11 16 16 C 1.53006 * 109.47103 * 300.00539 * 15 14 13 17 17 C 1.53007 * 109.46799 * 60.00110 * 15 14 13 18 18 C 1.50698 * 109.47531 * 180.02562 * 15 14 13 19 19 H 1.08006 * 119.99359 * 359.97438 * 18 15 14 20 20 C 1.37865 * 120.00244 * 180.02562 * 18 15 14 21 21 N 1.31518 * 120.00271 * 359.97438 * 20 18 15 22 22 Si 1.86805 * 120.00271 * 180.02562 * 20 18 15 23 23 H 1.48502 * 109.46702 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47423 * 119.99490 * 22 20 18 25 25 H 1.48497 * 109.47221 * 239.99674 * 22 20 18 26 26 H 1.09002 * 109.46818 * 300.00038 * 1 2 3 27 27 H 1.08994 * 109.47281 * 59.99487 * 1 2 3 28 28 H 1.09004 * 109.47031 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46818 * 239.99962 * 2 1 3 30 30 H 1.09004 * 109.47686 * 120.00185 * 2 1 3 31 31 H 1.09001 * 109.47002 * 299.99574 * 5 3 2 32 32 H 1.08993 * 109.46955 * 60.00011 * 5 3 2 33 33 H 1.09000 * 109.47050 * 179.97438 * 5 3 2 34 34 H 1.08008 * 126.06144 * 179.97438 * 8 7 6 35 35 H 1.07994 * 127.32183 * 179.97438 * 9 8 7 36 36 H 1.08994 * 109.47492 * 300.00127 * 14 13 11 37 37 H 1.08999 * 109.47155 * 60.00938 * 14 13 11 38 38 H 1.08996 * 109.47118 * 59.99913 * 16 15 14 39 39 H 1.09000 * 109.46653 * 179.97438 * 16 15 14 40 40 H 1.08996 * 109.46922 * 299.99338 * 16 15 14 41 41 H 1.08994 * 109.47107 * 60.00205 * 17 15 14 42 42 H 1.09002 * 109.46841 * 180.02562 * 17 15 14 43 43 H 1.08999 * 109.46856 * 300.00008 * 17 15 14 44 44 H 0.96996 * 120.00204 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9815 0.8419 5 6 1.6352 2.1266 -1.3073 6 7 3.5001 1.4442 0.1203 7 7 4.3119 0.8945 -0.7094 8 6 5.5533 1.0646 -0.3316 9 6 5.5431 1.7949 0.8585 10 6 4.2065 2.0360 1.1293 11 6 3.6576 2.7760 2.2749 12 8 4.4062 3.2538 3.1048 13 8 2.3240 2.9247 2.4048 14 6 1.8531 3.6666 3.5607 15 6 0.3245 3.7297 3.5380 16 6 -0.1381 4.4305 2.2590 17 6 -0.2451 2.3101 3.5763 18 6 -0.1644 4.5002 4.7374 19 1 0.5444 4.9040 5.4452 20 6 -1.5162 4.6885 4.9315 21 7 -2.3793 4.1963 4.0698 22 14 -2.1222 5.6442 6.4178 23 1 -0.9597 6.0895 7.2275 24 1 -2.8928 6.8296 5.9637 25 1 -2.9957 4.7728 7.2441 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 2.0698 1.5876 -2.1492 32 1 0.5489 2.1253 -1.3968 33 1 1.9982 3.1544 -1.3071 34 1 6.4303 0.7033 -0.8482 35 1 6.3963 2.1094 1.4411 36 1 2.1822 3.1670 4.4718 37 1 2.2592 4.6777 3.5336 38 1 0.2154 3.8736 1.3913 39 1 -1.2271 4.4751 2.2427 40 1 0.2677 5.4418 2.2317 41 1 0.0844 1.8109 4.4874 42 1 -1.3341 2.3551 3.5597 43 1 0.1084 1.7533 2.7086 44 1 -3.3304 4.3292 4.2062 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344118823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:50 Heat of formation + Delta-G solvation = -38.828997 kcal Electronic energy + Delta-G solvation = -25154.707997 eV Core-core repulsion = 21687.130895 eV Total energy + Delta-G solvation = -3467.577102 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.65050 -41.27485 -38.43186 -37.43372 -36.65278 -33.34545 -32.59499 -32.10089 -29.94304 -27.79981 -27.57525 -27.18694 -25.92382 -24.69012 -23.26661 -21.86829 -20.98095 -20.74335 -19.11512 -17.89786 -17.78137 -17.66112 -16.98829 -16.60272 -16.43957 -16.14173 -15.19397 -15.01259 -14.81620 -14.76027 -14.50965 -14.30272 -13.80421 -13.59451 -13.36581 -13.19069 -13.15655 -12.86933 -12.75839 -12.68927 -12.57247 -12.35905 -12.28004 -12.12021 -11.89901 -11.80041 -11.76546 -11.48970 -11.33517 -11.23746 -10.73779 -10.40538 -10.33187 -10.07208 -8.05280 -6.22379 -0.06813 1.30118 1.41731 1.45615 1.53272 1.54369 1.60989 1.86805 2.44812 3.18849 3.30528 3.52752 3.78407 3.92159 4.08024 4.22894 4.23351 4.25239 4.37941 4.43041 4.47307 4.57030 4.59177 4.76802 4.81610 4.90265 4.93961 4.98635 5.03723 5.07007 5.11877 5.19646 5.24055 5.30312 5.42297 5.45545 5.51823 5.63931 5.64768 5.73144 6.08504 6.16687 6.36507 6.51266 6.81393 7.01243 7.45619 8.94311 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020477 B = 0.004712 C = 0.004067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.047113 B = 5940.762822 C = 6882.370761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C 0.122 3.878 4 H 0.117 0.883 5 C -0.153 4.153 6 N -0.254 5.254 7 N -0.272 5.272 8 C -0.003 4.003 9 C -0.150 4.150 10 C -0.057 4.057 11 C 0.531 3.469 12 O -0.526 6.526 13 O -0.345 6.345 14 C 0.094 3.906 15 C 0.065 3.935 16 C -0.118 4.118 17 C -0.117 4.117 18 C -0.533 4.533 19 H 0.048 0.952 20 C 0.033 3.967 21 N -0.896 5.896 22 Si 0.948 3.052 23 H -0.275 1.275 24 H -0.280 1.280 25 H -0.280 1.280 26 H 0.049 0.951 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.229 0.771 35 H 0.179 0.821 36 H 0.052 0.948 37 H 0.052 0.948 38 H 0.034 0.966 39 H 0.066 0.934 40 H 0.018 0.982 41 H 0.017 0.983 42 H 0.066 0.934 43 H 0.035 0.965 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.709 -7.871 -11.423 16.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.155 4.155 3 C 0.023 3.977 4 H 0.134 0.866 5 C -0.211 4.211 6 N -0.045 5.045 7 N -0.106 5.106 8 C -0.177 4.177 9 C -0.179 4.179 10 C -0.181 4.181 11 C 0.376 3.624 12 O -0.415 6.415 13 O -0.261 6.261 14 C 0.021 3.979 15 C 0.064 3.936 16 C -0.175 4.175 17 C -0.175 4.175 18 C -0.571 4.571 19 H 0.066 0.934 20 C -0.168 4.168 21 N -0.534 5.534 22 Si 0.775 3.225 23 H -0.199 1.199 24 H -0.206 1.206 25 H -0.206 1.206 26 H 0.068 0.932 27 H 0.093 0.907 28 H 0.093 0.907 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.117 0.883 33 H 0.071 0.929 34 H 0.245 0.755 35 H 0.196 0.804 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.053 0.947 39 H 0.084 0.916 40 H 0.037 0.963 41 H 0.036 0.964 42 H 0.084 0.916 43 H 0.054 0.946 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 7.860 -8.172 -11.990 16.502 hybrid contribution 0.164 1.200 1.974 2.316 sum 8.024 -6.973 -10.016 14.606 Atomic orbital electron populations 1.21813 0.92934 1.03253 1.02837 1.21748 0.97801 0.93005 1.02977 1.22353 0.72033 1.00441 1.02859 0.86594 1.22128 1.03891 1.00075 0.94984 1.46377 1.08105 1.35534 1.14530 1.73098 1.02271 1.17434 1.17830 1.24237 0.95034 1.02225 0.96201 1.22522 0.93897 1.02057 0.99389 1.20872 0.93678 1.09201 0.94383 1.20140 0.81500 0.77004 0.83789 1.90831 1.60506 1.47562 1.42584 1.86550 1.22387 1.68942 1.48228 1.23432 0.97331 0.93371 0.83725 1.18261 0.85924 0.94434 0.94948 1.21627 1.02831 0.97205 0.95883 1.21638 1.02881 0.95680 0.97313 1.21195 0.92287 1.35186 1.08461 0.93417 1.25420 0.96725 0.96143 0.98505 1.69917 1.02014 1.45292 1.36148 0.85659 0.78157 0.78625 0.80080 1.19929 1.20608 1.20624 0.93228 0.90698 0.90695 0.89734 0.92696 0.90383 0.88324 0.92946 0.75509 0.80369 0.92945 0.92917 0.94736 0.91567 0.96323 0.96401 0.91558 0.94645 0.92824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.67 71.98 0.70 -2.42 16 2 C -0.12 -2.65 5.58 30.59 0.17 -2.48 16 3 C 0.12 3.20 3.04 44.99 0.14 3.34 16 4 H 0.12 3.60 5.07 -2.39 -0.01 3.59 16 5 C -0.15 -3.38 9.13 71.98 0.66 -2.72 16 6 N -0.25 -7.14 3.09 -314.33 -0.97 -8.11 16 7 N -0.27 -6.85 11.58 -57.15 -0.66 -7.51 16 8 C 0.00 -0.06 12.03 85.17 1.02 0.97 16 9 C -0.15 -3.73 10.85 22.67 0.25 -3.48 16 10 C -0.06 -1.76 6.96 40.75 0.28 -1.48 16 11 C 0.53 19.70 7.94 70.12 0.56 20.26 16 12 O -0.53 -21.68 16.71 19.68 0.33 -21.35 16 13 O -0.35 -13.28 6.02 -57.32 -0.35 -13.62 16 14 C 0.09 4.07 4.27 71.98 0.31 4.38 16 15 C 0.06 3.02 0.58 -52.92 -0.03 2.99 16 16 C -0.12 -5.33 8.11 71.98 0.58 -4.74 16 17 C -0.12 -5.31 8.11 71.98 0.58 -4.72 16 18 C -0.53 -27.78 8.01 25.60 0.21 -27.57 16 19 H 0.05 2.52 7.74 -2.91 -0.02 2.50 16 20 C 0.03 1.68 5.15 84.65 0.44 2.11 16 21 N -0.90 -46.82 9.35 21.44 0.20 -46.62 16 22 Si 0.95 41.71 29.54 68.60 2.03 43.74 16 23 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 24 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 25 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 26 H 0.05 1.23 7.58 -2.39 -0.02 1.21 16 27 H 0.07 1.33 6.56 -2.39 -0.02 1.31 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 31 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.10 1.87 6.56 -2.39 -0.02 1.86 16 33 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.23 2.58 8.06 -2.91 -0.02 2.55 16 35 H 0.18 3.78 8.06 -2.91 -0.02 3.75 16 36 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.03 1.37 7.68 -2.39 -0.02 1.35 16 39 H 0.07 3.27 6.07 -2.39 -0.01 3.26 16 40 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.07 3.27 6.07 -2.39 -0.01 3.26 16 43 H 0.03 1.41 7.12 -2.39 -0.02 1.39 16 44 H 0.26 13.12 8.31 -92.71 -0.77 12.34 16 Total: -1.00 -58.98 355.17 7.41 -51.57 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.98 Total: 17.48 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: 5.86 Total: -15.57 kcal Atomic # 7 Polarization: -60.81 SS G_CDS: -1.43 Total: -62.24 kcal Atomic # 8 Polarization: -34.96 SS G_CDS: -0.02 Total: -34.97 kcal Atomic # 14 Polarization: 41.71 SS G_CDS: 2.03 Total: 43.74 kcal Total: -58.98 7.41 -51.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344118823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.738 kcal (2) G-P(sol) polarization free energy of solvation -58.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds