Wall clock time and date at job start Tue Mar 31 2020 08:51:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50705 * 119.99993 * 2 1 4 4 O 1.42901 * 109.46718 * 134.99982 * 3 2 1 5 5 C 1.42901 * 113.99995 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47652 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99673 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00452 * 179.97438 * 6 5 4 9 9 C 1.46597 * 119.68131 * 359.97438 * 8 6 5 10 10 C 1.53957 * 110.57566 * 132.19721 * 9 8 6 11 11 C 1.51114 * 108.11724 * 50.60073 * 10 9 8 12 12 H 1.09000 * 108.30471 * 54.60562 * 11 10 9 13 13 C 1.55358 * 108.00099 * 296.46638 * 11 10 9 14 14 H 1.09000 * 111.51183 * 307.76340 * 13 11 10 15 15 C 1.53748 * 100.21707 * 189.86516 * 13 11 10 16 16 C 1.55289 * 101.84188 * 39.09132 * 15 13 11 17 17 N 1.45468 * 118.13965 * 178.74949 * 11 10 9 18 18 C 1.36938 * 126.40479 * 330.14966 * 17 11 10 19 19 H 1.07998 * 120.00052 * 7.53719 * 18 17 11 20 20 C 1.38813 * 119.99647 * 187.54164 * 18 17 11 21 21 N 1.31616 * 120.00190 * 8.10504 * 20 18 17 22 22 Si 1.86805 * 119.99876 * 188.10979 * 20 18 17 23 23 H 1.48495 * 109.47154 * 94.79957 * 22 20 18 24 24 H 1.48497 * 109.46835 * 214.80248 * 22 20 18 25 25 H 1.48501 * 109.46872 * 334.79727 * 22 20 18 26 26 C 1.47717 * 119.68588 * 179.97438 * 8 6 5 27 27 H 1.07999 * 120.00037 * 179.97438 * 1 2 3 28 28 H 1.08007 * 120.00277 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99996 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.46794 * 15.00656 * 3 2 1 31 31 H 1.08992 * 109.47453 * 255.00116 * 3 2 1 32 32 H 1.09003 * 109.47271 * 59.99486 * 5 4 3 33 33 H 1.09007 * 109.46600 * 300.00202 * 5 4 3 34 34 H 1.09005 * 109.25217 * 252.47341 * 9 8 6 35 35 H 1.08995 * 109.25761 * 11.94515 * 9 8 6 36 36 H 1.09001 * 109.88519 * 170.51373 * 10 9 8 37 37 H 1.08999 * 109.87923 * 291.58964 * 10 9 8 38 38 H 1.08994 * 110.95824 * 280.95382 * 15 13 11 39 39 H 1.08995 * 110.98634 * 157.24053 * 15 13 11 40 40 H 1.09004 * 109.91888 * 96.86648 * 16 15 13 41 41 H 1.08997 * 109.92237 * 218.16849 * 16 15 13 42 42 H 0.97000 * 120.00043 * 180.02562 * 21 20 18 43 43 H 1.09004 * 110.06819 * 112.82456 * 26 8 6 44 44 H 1.08999 * 110.06801 * 351.25286 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2412 0.9527 5 6 3.9077 2.4352 1.0330 6 6 4.9940 2.2567 2.0620 7 8 5.0897 1.2102 2.6675 8 7 5.8593 3.2599 2.3095 9 6 5.7376 4.5217 1.5732 10 6 5.8001 5.7196 2.5384 11 6 7.0168 5.5508 3.4186 12 1 7.8891 5.4271 2.7769 13 6 6.8205 4.2646 4.2675 14 1 5.8637 4.2724 4.7896 15 6 7.9944 4.4048 5.2504 16 6 7.9876 5.9305 5.5395 17 7 7.3015 6.5851 4.4011 18 6 6.9924 7.9148 4.2942 19 1 6.3822 8.2632 3.4740 20 6 7.4634 8.8151 5.2400 21 7 8.3340 8.4227 6.1458 22 14 6.8614 10.5834 5.2275 23 1 5.7235 10.7257 6.1708 24 1 7.9654 11.4850 5.6439 25 1 6.4170 10.9452 3.8575 26 6 6.9211 3.0776 3.3201 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3854 2.1161 0.2661 31 1 2.4755 1.4869 -0.9926 32 1 3.2678 3.2694 1.3206 33 1 4.3579 2.6407 0.0617 34 1 6.5523 4.5976 0.8530 35 1 4.7859 4.5378 1.0423 36 1 5.8780 6.6479 1.9725 37 1 4.9071 5.7391 3.1631 38 1 8.9316 4.1006 4.7844 39 1 7.8112 3.8347 6.1612 40 1 7.4463 6.1309 6.4642 41 1 9.0106 6.2983 5.6178 42 1 8.6628 9.0517 6.8069 43 1 7.8985 3.0659 2.8378 44 1 6.7614 2.1482 3.8668 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496855176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:27 Heat of formation + Delta-G solvation = -24.140441 kcal Electronic energy + Delta-G solvation = -24071.616309 eV Core-core repulsion = 20604.676151 eV Total energy + Delta-G solvation = -3466.940158 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.31933 -38.64873 -37.64359 -35.40173 -34.13366 -32.76274 -31.61902 -30.16405 -28.75463 -27.62827 -25.77371 -24.87186 -23.29047 -22.42444 -20.46020 -20.14384 -19.82615 -18.89780 -17.56039 -16.76342 -16.63762 -16.15768 -15.77323 -15.29981 -14.99124 -14.74206 -14.41256 -13.95359 -13.91458 -13.43542 -13.23557 -13.00393 -12.73784 -12.47009 -12.31278 -12.25999 -11.76650 -11.53202 -11.36599 -11.27900 -10.89956 -10.82757 -10.74180 -10.25517 -10.18590 -10.12818 -9.94276 -9.69002 -9.65999 -9.56618 -9.47551 -8.66039 -8.54038 -6.84783 -5.75175 -3.09132 1.80542 2.62314 2.75911 3.37167 3.42073 3.44625 3.72072 4.42273 4.46506 4.71461 4.77566 4.82619 4.91626 4.99815 5.04038 5.06009 5.18817 5.20539 5.30837 5.49244 5.51619 5.53061 5.56816 5.77258 5.86373 6.00019 6.10558 6.13958 6.20369 6.23581 6.28302 6.33607 6.44476 6.57637 6.60015 6.76183 6.85541 7.03334 7.42686 7.46638 7.62730 7.76433 8.20985 8.21477 9.15069 9.79719 10.48403 11.37306 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024257 B = 0.003230 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.033877 B = 8665.849272 C = 9458.280213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.149 4.149 3 C 0.086 3.914 4 O -0.360 6.360 5 C 0.044 3.956 6 C 0.513 3.487 7 O -0.527 6.527 8 N -0.607 5.607 9 C 0.111 3.889 10 C -0.131 4.131 11 C 0.168 3.832 12 H 0.018 0.982 13 C -0.124 4.124 14 H 0.078 0.922 15 C -0.135 4.135 16 C 0.175 3.825 17 N -0.593 5.593 18 C -0.228 4.228 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.918 5.918 22 Si 0.909 3.091 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.129 3.871 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.061 0.939 40 H 0.036 0.964 41 H 0.056 0.944 42 H 0.252 0.748 43 H 0.070 0.930 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.561 -11.787 -12.715 19.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.167 4.167 3 C 0.009 3.991 4 O -0.278 6.278 5 C -0.035 4.035 6 C 0.300 3.700 7 O -0.403 6.403 8 N -0.342 5.342 9 C -0.012 4.012 10 C -0.171 4.171 11 C 0.059 3.941 12 H 0.035 0.965 13 C -0.145 4.145 14 H 0.097 0.903 15 C -0.174 4.174 16 C 0.051 3.949 17 N -0.317 5.317 18 C -0.357 4.357 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.565 5.565 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.218 1.218 25 H -0.206 1.206 26 C 0.007 3.993 27 H 0.123 0.877 28 H 0.116 0.884 29 H 0.136 0.864 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.063 0.937 43 H 0.088 0.912 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.405 -12.280 -12.165 19.678 hybrid contribution -0.376 1.405 -0.128 1.460 sum -9.781 -10.875 -12.293 19.106 Atomic orbital electron populations 1.23840 0.95511 1.02321 1.00117 1.22720 0.95612 0.98200 1.00139 1.21618 0.88856 0.96216 0.92379 1.88041 1.44281 1.35102 1.60426 1.22298 0.93369 0.89051 0.98822 1.20166 0.82265 0.83913 0.83679 1.90702 1.72346 1.26988 1.50231 1.48266 1.31291 1.13932 1.40667 1.21815 1.01778 0.83355 0.94290 1.21804 1.00594 0.96536 0.98124 1.20465 0.94108 0.88569 0.90916 0.96454 1.22615 0.99889 0.95247 0.96736 0.90329 1.22693 0.96641 1.00002 0.98020 1.21527 0.97966 0.85320 0.90134 1.44168 1.68185 1.02936 1.16437 1.18980 1.26002 0.81415 1.09264 0.90445 1.24806 0.98834 0.98044 0.98691 1.69948 1.32669 1.34094 1.19740 0.86151 0.77838 0.84541 0.77534 1.21700 1.21777 1.20626 1.21608 0.89152 0.99665 0.88849 0.87736 0.88383 0.86430 0.92516 0.92106 0.90094 0.90264 0.91315 0.90493 0.90349 0.91457 0.92120 0.92053 0.94620 0.92637 0.93731 0.91189 0.89119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.29 14.31 29.02 0.42 -0.88 16 2 C -0.15 -1.30 9.89 -36.02 -0.36 -1.65 16 3 C 0.09 0.77 6.35 36.01 0.23 1.00 16 4 O -0.36 -4.65 9.86 -55.14 -0.54 -5.19 16 5 C 0.04 0.49 4.75 36.00 0.17 0.66 16 6 C 0.51 7.66 7.75 -10.99 -0.09 7.57 16 7 O -0.53 -10.00 15.86 -14.35 -0.23 -10.22 16 8 N -0.61 -8.56 3.00 -172.51 -0.52 -9.08 16 9 C 0.11 1.34 6.24 -3.49 -0.02 1.31 16 10 C -0.13 -2.08 5.43 -27.18 -0.15 -2.23 16 11 C 0.17 3.25 2.55 -68.18 -0.17 3.07 16 12 H 0.02 0.36 8.00 -51.93 -0.42 -0.06 16 13 C -0.12 -2.18 2.82 -89.38 -0.25 -2.43 16 14 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 15 C -0.13 -2.47 6.53 -25.13 -0.16 -2.64 16 16 C 0.17 4.15 5.46 -1.92 -0.01 4.14 16 17 N -0.59 -14.51 3.35 -163.33 -0.55 -15.06 16 18 C -0.23 -6.10 9.91 -15.06 -0.15 -6.25 16 19 H 0.08 1.97 7.25 -52.49 -0.38 1.59 16 20 C -0.01 -0.19 5.45 -17.43 -0.09 -0.29 16 21 N -0.92 -26.61 10.66 55.49 0.59 -26.02 16 22 Si 0.91 21.64 29.56 -169.99 -5.03 16.62 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 C 0.13 1.96 5.99 -3.78 -0.02 1.94 16 27 H 0.10 0.61 8.06 -52.49 -0.42 0.19 16 28 H 0.10 0.60 7.90 -52.48 -0.41 0.19 16 29 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 30 H 0.06 0.43 7.86 -51.93 -0.41 0.03 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.74 7.55 -51.93 -0.39 0.35 16 33 H 0.08 0.66 7.99 -51.93 -0.41 0.25 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.08 0.70 5.84 -51.93 -0.30 0.39 16 36 H 0.08 1.25 7.72 -51.93 -0.40 0.84 16 37 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 38 H 0.06 1.03 8.12 -51.93 -0.42 0.61 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.04 0.93 7.86 -51.93 -0.41 0.52 16 41 H 0.06 1.46 7.25 -51.93 -0.38 1.09 16 42 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 43 H 0.07 1.00 8.12 -51.93 -0.42 0.58 16 44 H 0.09 1.44 7.00 -51.93 -0.36 1.08 16 LS Contribution 350.59 15.07 5.28 5.28 Total: -1.00 -32.92 350.59 -8.86 -41.78 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -7.21 Total: -1.45 kcal Atomic # 6 Polarization: 4.00 SS G_CDS: -0.66 Total: 3.34 kcal Atomic # 7 Polarization: -49.68 SS G_CDS: -0.47 Total: -50.15 kcal Atomic # 8 Polarization: -14.65 SS G_CDS: -0.77 Total: -15.42 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.62 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.92 -8.86 -41.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496855176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.639 kcal (2) G-P(sol) polarization free energy of solvation -32.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds