Wall clock time and date at job start Tue Mar 31 2020 08:51:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50705 * 119.99993 * 2 1 4 4 O 1.42901 * 109.46718 * 134.99982 * 3 2 1 5 5 C 1.42901 * 113.99995 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47652 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99673 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00452 * 179.97438 * 6 5 4 9 9 C 1.46597 * 119.68131 * 359.97438 * 8 6 5 10 10 C 1.53957 * 110.57566 * 132.19721 * 9 8 6 11 11 C 1.51114 * 108.11724 * 50.60073 * 10 9 8 12 12 H 1.09000 * 108.30471 * 54.60562 * 11 10 9 13 13 C 1.55358 * 108.00099 * 296.46638 * 11 10 9 14 14 H 1.09000 * 111.51183 * 307.76340 * 13 11 10 15 15 C 1.53748 * 100.21707 * 189.86516 * 13 11 10 16 16 C 1.55289 * 101.84188 * 39.09132 * 15 13 11 17 17 N 1.45468 * 118.13965 * 178.74949 * 11 10 9 18 18 C 1.36938 * 126.40479 * 330.14966 * 17 11 10 19 19 H 1.07998 * 120.00052 * 7.53719 * 18 17 11 20 20 C 1.38813 * 119.99647 * 187.54164 * 18 17 11 21 21 N 1.31616 * 120.00190 * 8.10504 * 20 18 17 22 22 Si 1.86805 * 119.99876 * 188.10979 * 20 18 17 23 23 H 1.48495 * 109.47154 * 94.79957 * 22 20 18 24 24 H 1.48497 * 109.46835 * 214.80248 * 22 20 18 25 25 H 1.48501 * 109.46872 * 334.79727 * 22 20 18 26 26 C 1.47717 * 119.68588 * 179.97438 * 8 6 5 27 27 H 1.07999 * 120.00037 * 179.97438 * 1 2 3 28 28 H 1.08007 * 120.00277 * 0.02562 * 1 2 3 29 29 H 1.08003 * 119.99996 * 180.02562 * 2 1 3 30 30 H 1.09001 * 109.46794 * 15.00656 * 3 2 1 31 31 H 1.08992 * 109.47453 * 255.00116 * 3 2 1 32 32 H 1.09003 * 109.47271 * 59.99486 * 5 4 3 33 33 H 1.09007 * 109.46600 * 300.00202 * 5 4 3 34 34 H 1.09005 * 109.25217 * 252.47341 * 9 8 6 35 35 H 1.08995 * 109.25761 * 11.94515 * 9 8 6 36 36 H 1.09001 * 109.88519 * 170.51373 * 10 9 8 37 37 H 1.08999 * 109.87923 * 291.58964 * 10 9 8 38 38 H 1.08994 * 110.95824 * 280.95382 * 15 13 11 39 39 H 1.08995 * 110.98634 * 157.24053 * 15 13 11 40 40 H 1.09004 * 109.91888 * 96.86648 * 16 15 13 41 41 H 1.08997 * 109.92237 * 218.16849 * 16 15 13 42 42 H 0.97000 * 120.00043 * 180.02562 * 21 20 18 43 43 H 1.09004 * 110.06819 * 112.82456 * 26 8 6 44 44 H 1.08999 * 110.06801 * 351.25286 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2412 0.9527 5 6 3.9077 2.4352 1.0330 6 6 4.9940 2.2567 2.0620 7 8 5.0897 1.2102 2.6675 8 7 5.8593 3.2599 2.3095 9 6 5.7376 4.5217 1.5732 10 6 5.8001 5.7196 2.5384 11 6 7.0168 5.5508 3.4186 12 1 7.8891 5.4271 2.7769 13 6 6.8205 4.2646 4.2675 14 1 5.8637 4.2724 4.7896 15 6 7.9944 4.4048 5.2504 16 6 7.9876 5.9305 5.5395 17 7 7.3015 6.5851 4.4011 18 6 6.9924 7.9148 4.2942 19 1 6.3822 8.2632 3.4740 20 6 7.4634 8.8151 5.2400 21 7 8.3340 8.4227 6.1458 22 14 6.8614 10.5834 5.2275 23 1 5.7235 10.7257 6.1708 24 1 7.9654 11.4850 5.6439 25 1 6.4170 10.9452 3.8575 26 6 6.9211 3.0776 3.3201 27 1 -0.5400 -0.9353 -0.0004 28 1 -0.5401 0.9353 -0.0004 29 1 1.8500 -0.9353 -0.0004 30 1 1.3854 2.1161 0.2661 31 1 2.4755 1.4869 -0.9926 32 1 3.2678 3.2694 1.3206 33 1 4.3579 2.6407 0.0617 34 1 6.5523 4.5976 0.8530 35 1 4.7859 4.5378 1.0423 36 1 5.8780 6.6479 1.9725 37 1 4.9071 5.7391 3.1631 38 1 8.9316 4.1006 4.7844 39 1 7.8112 3.8347 6.1612 40 1 7.4463 6.1309 6.4642 41 1 9.0106 6.2983 5.6178 42 1 8.6628 9.0517 6.8069 43 1 7.8985 3.0659 2.8378 44 1 6.7614 2.1482 3.8668 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496855176.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:26 Heat of formation + Delta-G solvation = -44.635598 kcal Electronic energy + Delta-G solvation = -24072.505046 eV Core-core repulsion = 20604.676151 eV Total energy + Delta-G solvation = -3467.828895 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.52386 -39.90793 -38.63793 -36.80850 -34.79334 -34.52617 -33.04197 -31.68104 -30.19698 -28.76431 -26.74023 -26.42163 -24.68054 -23.76846 -21.89970 -21.36230 -20.94929 -20.08097 -18.72257 -18.20014 -17.49103 -17.33072 -16.95314 -16.73747 -16.23697 -15.93677 -15.62519 -15.61025 -15.08700 -14.77322 -14.38272 -14.17682 -13.94952 -13.81526 -13.43159 -13.25568 -13.08757 -13.06115 -12.94552 -12.69719 -12.50031 -12.07856 -11.98666 -11.87605 -11.79921 -11.62888 -11.48895 -11.02551 -10.97014 -10.73806 -10.69822 -10.23946 -9.72077 -8.85182 -7.83277 -5.18431 1.20482 1.46700 1.48544 1.53532 1.57016 1.78191 2.51247 2.92074 3.34743 3.41705 3.59256 3.84909 3.87630 3.99150 4.07893 4.14528 4.18984 4.23385 4.26628 4.28590 4.40775 4.48034 4.51353 4.63120 4.64956 4.72249 4.81372 4.84390 4.92317 4.99380 5.03246 5.07453 5.23966 5.43889 5.53880 5.55603 5.65223 5.67757 5.71809 5.75752 6.09612 6.21311 6.38178 7.08833 7.11627 7.80071 8.49815 9.28856 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.024257 B = 0.003230 C = 0.002960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.033877 B = 8665.849272 C = 9458.280213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.176 4.176 3 C 0.083 3.917 4 O -0.397 6.397 5 C 0.047 3.953 6 C 0.508 3.492 7 O -0.576 6.576 8 N -0.606 5.606 9 C 0.117 3.883 10 C -0.126 4.126 11 C 0.157 3.843 12 H 0.019 0.981 13 C -0.109 4.109 14 H 0.061 0.939 15 C -0.122 4.122 16 C 0.179 3.821 17 N -0.614 5.614 18 C -0.229 4.229 19 H 0.090 0.910 20 C -0.072 4.072 21 N -0.953 5.953 22 Si 0.974 3.026 23 H -0.293 1.293 24 H -0.299 1.299 25 H -0.261 1.261 26 C 0.136 3.864 27 H 0.114 0.886 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.115 0.885 34 H 0.090 0.910 35 H 0.118 0.882 36 H 0.080 0.920 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.076 0.924 40 H -0.002 1.002 41 H 0.020 0.980 42 H 0.245 0.755 43 H 0.085 0.915 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.282 -11.948 -15.593 22.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.194 4.194 3 C 0.007 3.993 4 O -0.316 6.316 5 C -0.032 4.032 6 C 0.297 3.703 7 O -0.456 6.456 8 N -0.340 5.340 9 C -0.006 4.006 10 C -0.165 4.165 11 C 0.050 3.950 12 H 0.037 0.963 13 C -0.129 4.129 14 H 0.080 0.920 15 C -0.160 4.160 16 C 0.054 3.946 17 N -0.338 5.338 18 C -0.358 4.358 19 H 0.108 0.892 20 C -0.264 4.264 21 N -0.603 5.603 22 Si 0.802 3.198 23 H -0.220 1.220 24 H -0.226 1.226 25 H -0.185 1.185 26 C 0.013 3.987 27 H 0.133 0.867 28 H 0.129 0.871 29 H 0.125 0.875 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.133 0.867 34 H 0.108 0.892 35 H 0.136 0.864 36 H 0.099 0.901 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.016 0.984 41 H 0.038 0.962 42 H 0.054 0.946 43 H 0.103 0.897 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -11.152 -12.442 -15.103 22.523 hybrid contribution 0.132 1.416 0.757 1.611 sum -11.021 -11.027 -14.346 21.186 Atomic orbital electron populations 1.24057 0.95067 1.03465 0.97941 1.22798 0.96305 0.98122 1.02220 1.21812 0.88311 0.96604 0.92558 1.87999 1.45501 1.36236 1.61864 1.22411 0.92561 0.89238 0.99025 1.20942 0.82567 0.83052 0.83764 1.90681 1.73623 1.29002 1.52272 1.48331 1.30730 1.14682 1.40248 1.21959 1.05003 0.80413 0.93178 1.21751 0.97948 0.98718 0.98054 1.20728 0.95786 0.87720 0.90763 0.96329 1.22436 0.98423 0.95654 0.96430 0.92043 1.22571 0.98158 0.95945 0.99346 1.21298 0.95287 0.88910 0.89060 1.44467 1.68169 1.03427 1.17770 1.19427 1.24811 0.82644 1.08931 0.89246 1.25657 0.99649 1.02123 0.99008 1.70167 1.34439 1.34981 1.20680 0.85119 0.76683 0.79784 0.78168 1.22007 1.22622 1.18548 1.21437 0.90533 0.97795 0.88894 0.86745 0.87101 0.87500 0.91031 0.90227 0.87650 0.86705 0.89208 0.86408 0.90136 0.92648 0.90277 0.90569 0.98380 0.96159 0.94630 0.89651 0.89885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 14.31 67.79 0.97 -1.07 16 2 C -0.18 -2.80 9.89 25.65 0.25 -2.55 16 3 C 0.08 1.25 6.35 71.24 0.45 1.71 16 4 O -0.40 -9.32 9.86 -129.94 -1.28 -10.60 16 5 C 0.05 0.85 4.75 71.23 0.34 1.19 16 6 C 0.51 13.90 7.75 87.66 0.68 14.58 16 7 O -0.58 -21.41 15.86 16.01 0.25 -21.16 16 8 N -0.61 -15.33 3.00 -818.10 -2.45 -17.78 16 9 C 0.12 2.31 6.24 86.68 0.54 2.85 16 10 C -0.13 -3.66 5.43 30.30 0.16 -3.49 16 11 C 0.16 5.89 2.55 45.38 0.12 6.01 16 12 H 0.02 0.73 8.00 -2.39 -0.02 0.71 16 13 C -0.11 -3.73 2.82 -9.99 -0.03 -3.76 16 14 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 15 C -0.12 -4.45 6.53 31.63 0.21 -4.24 16 16 C 0.18 8.87 5.46 86.85 0.47 9.34 16 17 N -0.61 -30.42 3.35 -670.65 -2.25 -32.67 16 18 C -0.23 -12.30 9.91 84.03 0.83 -11.47 16 19 H 0.09 4.46 7.25 -2.91 -0.02 4.44 16 20 C -0.07 -4.03 5.45 84.86 0.46 -3.56 16 21 N -0.95 -57.61 10.66 21.65 0.23 -57.38 16 22 Si 0.97 45.06 29.56 68.60 2.03 47.09 16 23 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 24 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 25 H -0.26 -11.11 7.11 99.48 0.71 -10.41 16 26 C 0.14 3.88 5.99 85.88 0.51 4.39 16 27 H 0.11 1.11 8.06 -2.91 -0.02 1.08 16 28 H 0.11 1.04 7.90 -2.91 -0.02 1.01 16 29 H 0.11 1.86 8.06 -2.91 -0.02 1.83 16 30 H 0.07 0.84 7.86 -2.39 -0.02 0.82 16 31 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.11 1.42 7.55 -2.39 -0.02 1.40 16 33 H 0.12 1.29 7.99 -2.38 -0.02 1.27 16 34 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 35 H 0.12 1.44 5.84 -2.39 -0.01 1.42 16 36 H 0.08 2.32 7.72 -2.39 -0.02 2.31 16 37 H 0.05 1.74 8.13 -2.39 -0.02 1.72 16 38 H 0.08 2.61 8.12 -2.39 -0.02 2.59 16 39 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 40 H 0.00 -0.12 7.86 -2.38 -0.02 -0.14 16 41 H 0.02 1.13 7.25 -2.39 -0.02 1.11 16 42 H 0.24 14.46 8.31 -92.71 -0.77 13.68 16 43 H 0.09 2.21 8.12 -2.38 -0.02 2.19 16 44 H 0.08 2.56 7.00 -2.39 -0.02 2.54 16 Total: -1.00 -75.53 350.59 3.47 -72.07 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 0.96 Total: 10.50 kcal Atomic # 6 Polarization: 3.96 SS G_CDS: 5.98 Total: 9.93 kcal Atomic # 7 Polarization: -103.35 SS G_CDS: -4.47 Total: -107.83 kcal Atomic # 8 Polarization: -30.73 SS G_CDS: -1.03 Total: -31.76 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -75.53 3.47 -72.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496855176.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.431 kcal (2) G-P(sol) polarization free energy of solvation -75.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds