Wall clock time and date at job start Tue Mar 31 2020 08:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50698 * 120.00312 * 2 1 4 4 O 1.42899 * 109.47627 * 134.99722 * 3 2 1 5 5 C 1.42899 * 114.00265 * 179.97438 * 4 3 2 6 6 C 1.50700 * 109.47143 * 179.97438 * 5 4 3 7 7 O 1.21283 * 119.99803 * 359.97438 * 6 5 4 8 8 N 1.34777 * 119.99675 * 180.27800 * 6 5 4 9 9 C 1.47144 * 121.01660 * 359.71882 * 8 6 5 10 10 C 1.53049 * 107.68085 * 122.56259 * 9 8 6 11 11 C 1.51132 * 111.11463 * 54.40378 * 10 9 8 12 12 H 1.08994 * 108.46044 * 185.39002 * 11 10 9 13 13 C 1.53995 * 113.17301 * 304.88526 * 11 10 9 14 14 H 1.09000 * 112.71138 * 284.02869 * 13 11 10 15 15 C 1.56020 * 100.38839 * 163.66162 * 13 11 10 16 16 C 1.54492 * 102.62132 * 323.14091 * 15 13 11 17 17 N 1.46472 * 113.23158 * 65.10075 * 11 10 9 18 18 C 1.36932 * 126.05477 * 29.52425 * 17 11 10 19 19 H 1.08003 * 120.00256 * 359.97438 * 18 17 11 20 20 C 1.38810 * 120.00240 * 179.97438 * 18 17 11 21 21 N 1.31618 * 119.99662 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00490 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.47034 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47461 * 119.99979 * 22 20 18 25 25 H 1.48501 * 109.47085 * 240.00358 * 22 20 18 26 26 C 1.46530 * 121.01064 * 179.44829 * 8 6 5 27 27 H 1.07997 * 120.00391 * 179.97438 * 1 2 3 28 28 H 1.08006 * 119.99613 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.99420 * 179.97438 * 2 1 3 30 30 H 1.08997 * 109.47230 * 14.99297 * 3 2 1 31 31 H 1.09009 * 109.46876 * 254.99377 * 3 2 1 32 32 H 1.09009 * 109.46798 * 59.99573 * 5 4 3 33 33 H 1.08998 * 109.46844 * 300.00077 * 5 4 3 34 34 H 1.08994 * 109.82073 * 242.11205 * 9 8 6 35 35 H 1.08997 * 109.81330 * 3.02369 * 9 8 6 36 36 H 1.08998 * 109.14366 * 174.82581 * 10 9 8 37 37 H 1.09004 * 109.15001 * 294.03674 * 10 9 8 38 38 H 1.09002 * 110.77526 * 204.85427 * 15 13 11 39 39 H 1.09003 * 110.93824 * 81.50297 * 15 13 11 40 40 H 1.09007 * 109.90127 * 263.44635 * 16 15 13 41 41 H 1.09007 * 110.05109 * 142.29609 * 16 15 13 42 42 H 0.97005 * 120.00169 * 180.02562 * 21 20 18 43 43 H 1.09002 * 109.34405 * 355.82625 * 26 8 6 44 44 H 1.09003 * 109.34734 * 115.37677 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 8 3.1268 1.2413 0.9527 5 6 3.9085 2.4349 1.0320 6 6 4.9940 2.2569 2.0621 7 8 5.0885 1.2110 2.6689 8 7 5.8559 3.2621 2.3133 9 6 5.7613 4.5404 1.5907 10 6 5.5899 5.6505 2.6303 11 6 6.6936 5.6056 3.6617 12 1 6.4782 6.3478 4.4303 13 6 6.8203 4.2360 4.3544 14 1 6.0401 4.0658 5.0963 15 6 8.2402 4.3709 4.9868 16 6 9.0150 5.1642 3.9111 17 7 8.0177 5.8905 3.1039 18 6 8.2823 6.6902 2.0244 19 1 7.4724 7.1779 1.5021 20 6 9.5914 6.8742 1.6011 21 7 10.5784 6.2802 2.2379 22 14 9.9525 7.9646 0.1280 23 1 8.6795 8.5107 -0.4073 24 1 10.8353 9.0835 0.5449 25 1 10.6294 7.1658 -0.9250 26 6 6.9121 3.1174 3.3187 27 1 -0.5400 -0.9352 -0.0004 28 1 -0.5400 0.9354 -0.0004 29 1 1.8499 -0.9354 0.0004 30 1 1.3856 2.1161 0.2658 31 1 2.4757 1.4866 -0.9927 32 1 3.2689 3.2696 1.3190 33 1 4.3588 2.6394 0.0607 34 1 6.6726 4.7089 1.0170 35 1 4.9005 4.5241 0.9223 36 1 5.6095 6.6173 2.1274 37 1 4.6292 5.5270 3.1302 38 1 8.6891 3.3898 5.1422 39 1 8.1984 4.9279 5.9229 40 1 9.5770 4.4782 3.2772 41 1 9.6948 5.8719 4.3857 42 1 11.4934 6.4090 1.9424 43 1 6.8051 2.1548 3.8188 44 1 7.8850 3.1615 2.8292 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496855177.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:29 Heat of formation + Delta-G solvation = -43.235902 kcal Electronic energy + Delta-G solvation = -24588.732914 eV Core-core repulsion = 21120.964714 eV Total energy + Delta-G solvation = -3467.768199 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.53126 -39.92875 -38.61617 -36.49443 -34.79808 -34.57114 -33.16973 -31.30782 -30.00682 -28.66803 -26.90734 -26.42158 -25.14667 -23.97112 -21.83940 -21.26923 -20.76721 -19.64561 -18.55397 -18.21161 -17.56552 -17.34287 -16.87248 -16.80674 -16.24884 -15.99193 -15.64742 -15.60730 -15.02394 -14.66055 -14.34601 -14.02611 -13.91542 -13.87847 -13.23191 -13.19492 -13.04272 -13.01578 -12.85545 -12.63172 -12.53074 -12.21769 -11.92278 -11.86597 -11.64865 -11.51022 -11.45815 -11.17884 -10.97482 -10.74706 -10.62340 -10.23951 -9.61210 -8.78369 -7.76743 -5.09828 1.21026 1.49753 1.50517 1.55241 1.59741 1.82827 2.54795 2.94306 3.43160 3.51613 3.63094 3.83548 3.94020 4.06702 4.08360 4.13759 4.19535 4.26426 4.28422 4.29024 4.45619 4.48506 4.58538 4.63164 4.63746 4.77364 4.83771 4.89770 4.98454 5.00247 5.14562 5.24534 5.27990 5.40428 5.52583 5.61624 5.67973 5.69844 5.72295 5.82576 6.11713 6.26455 6.47375 7.13598 7.16776 7.86843 8.54228 9.35258 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.020351 B = 0.003865 C = 0.003467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.508147 B = 7242.391429 C = 8073.588531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.178 4.178 3 C 0.082 3.918 4 O -0.395 6.395 5 C 0.051 3.949 6 C 0.509 3.491 7 O -0.580 6.580 8 N -0.599 5.599 9 C 0.115 3.885 10 C -0.125 4.125 11 C 0.161 3.839 12 H 0.017 0.983 13 C -0.102 4.102 14 H 0.104 0.896 15 C -0.131 4.131 16 C 0.185 3.815 17 N -0.608 5.608 18 C -0.213 4.213 19 H 0.095 0.905 20 C -0.072 4.072 21 N -0.956 5.956 22 Si 0.968 3.032 23 H -0.257 1.257 24 H -0.303 1.303 25 H -0.301 1.301 26 C 0.134 3.866 27 H 0.115 0.885 28 H 0.113 0.887 29 H 0.105 0.895 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.113 0.887 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.116 0.884 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.074 0.926 39 H 0.073 0.927 40 H 0.010 0.990 41 H 0.004 0.996 42 H 0.241 0.759 43 H 0.075 0.925 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.839 -5.316 -3.455 19.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.196 4.196 3 C 0.007 3.993 4 O -0.315 6.315 5 C -0.028 4.028 6 C 0.299 3.701 7 O -0.460 6.460 8 N -0.331 5.331 9 C -0.007 4.007 10 C -0.164 4.164 11 C 0.055 3.945 12 H 0.034 0.966 13 C -0.123 4.123 14 H 0.122 0.878 15 C -0.169 4.169 16 C 0.060 3.940 17 N -0.333 5.333 18 C -0.342 4.342 19 H 0.113 0.887 20 C -0.265 4.265 21 N -0.606 5.606 22 Si 0.798 3.202 23 H -0.181 1.181 24 H -0.231 1.231 25 H -0.229 1.229 26 C 0.011 3.989 27 H 0.133 0.867 28 H 0.131 0.869 29 H 0.123 0.877 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.131 0.869 33 H 0.121 0.879 34 H 0.079 0.921 35 H 0.134 0.866 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.028 0.972 41 H 0.022 0.978 42 H 0.050 0.950 43 H 0.093 0.907 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -18.611 -5.939 -3.169 19.791 hybrid contribution 1.356 0.771 -0.689 1.705 sum -17.256 -5.168 -3.858 18.421 Atomic orbital electron populations 1.24058 0.94892 1.03557 0.97703 1.22782 0.96385 0.97974 1.02444 1.21821 0.88308 0.96817 0.92401 1.87995 1.45467 1.36256 1.61750 1.22322 0.92518 0.89468 0.98530 1.20886 0.82627 0.82772 0.83849 1.90663 1.73899 1.28764 1.52633 1.48060 1.30927 1.14946 1.39217 1.21874 1.03293 0.81118 0.94411 1.21564 0.98365 0.99118 0.97324 1.20488 0.86301 0.93521 0.94211 0.96590 1.22622 0.97730 0.94953 0.96947 0.87838 1.23014 0.95278 1.00356 0.98300 1.20954 0.90308 0.92505 0.90255 1.44562 1.01347 1.54408 1.32999 1.19418 0.92255 1.19004 1.03535 0.88747 1.25556 0.96021 1.02594 1.02282 1.70194 0.98447 1.48811 1.43172 0.85145 0.78130 0.77764 0.79181 1.18081 1.23057 1.22863 1.21202 0.89501 0.98700 0.89489 0.86677 0.86888 0.87715 0.90596 0.90741 0.86949 0.87857 0.92076 0.86595 0.90461 0.89526 0.90688 0.90786 0.97189 0.97818 0.94986 0.90672 0.93386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.09 14.31 67.78 0.97 -1.13 16 2 C -0.18 -3.07 9.89 25.64 0.25 -2.82 16 3 C 0.08 1.40 6.35 71.24 0.45 1.85 16 4 O -0.40 -10.25 9.86 -129.94 -1.28 -11.54 16 5 C 0.05 1.11 4.77 71.24 0.34 1.45 16 6 C 0.51 16.12 7.79 87.66 0.68 16.80 16 7 O -0.58 -23.61 15.93 16.00 0.25 -23.36 16 8 N -0.60 -18.72 2.94 -820.53 -2.41 -21.13 16 9 C 0.11 3.16 6.27 86.27 0.54 3.70 16 10 C -0.12 -3.56 5.19 30.00 0.16 -3.40 16 11 C 0.16 5.84 2.85 44.72 0.13 5.97 16 12 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 13 C -0.10 -3.39 3.84 -9.50 -0.04 -3.43 16 14 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 15 C -0.13 -4.71 6.28 32.15 0.20 -4.51 16 16 C 0.19 8.85 4.64 86.71 0.40 9.25 16 17 N -0.61 -28.25 3.12 -674.36 -2.11 -30.36 16 18 C -0.21 -10.72 9.02 84.03 0.76 -9.96 16 19 H 0.09 4.37 6.69 -2.91 -0.02 4.35 16 20 C -0.07 -3.91 5.49 84.86 0.47 -3.45 16 21 N -0.96 -56.39 10.38 21.65 0.22 -56.17 16 22 Si 0.97 43.85 29.55 68.60 2.03 45.88 16 23 H -0.26 -10.52 7.11 99.48 0.71 -9.81 16 24 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 25 H -0.30 -13.95 7.11 99.48 0.71 -13.25 16 26 C 0.13 4.74 5.44 86.28 0.47 5.21 16 27 H 0.12 1.16 8.06 -2.91 -0.02 1.14 16 28 H 0.11 1.07 7.90 -2.91 -0.02 1.05 16 29 H 0.10 2.00 8.06 -2.91 -0.02 1.98 16 30 H 0.08 0.96 7.86 -2.39 -0.02 0.94 16 31 H 0.07 1.03 8.14 -2.38 -0.02 1.01 16 32 H 0.11 1.70 7.78 -2.38 -0.02 1.69 16 33 H 0.10 1.76 7.90 -2.39 -0.02 1.74 16 34 H 0.06 2.11 7.48 -2.39 -0.02 2.09 16 35 H 0.12 2.11 5.99 -2.39 -0.01 2.10 16 36 H 0.08 2.24 7.01 -2.39 -0.02 2.22 16 37 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.07 2.50 7.97 -2.39 -0.02 2.48 16 39 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 40 H 0.01 0.54 6.99 -2.38 -0.02 0.52 16 41 H 0.00 0.20 7.56 -2.38 -0.02 0.18 16 42 H 0.24 14.06 8.31 -92.70 -0.77 13.29 16 43 H 0.07 2.72 7.00 -2.39 -0.02 2.71 16 44 H 0.05 1.99 6.79 -2.39 -0.02 1.98 16 Total: -1.00 -71.68 345.28 3.46 -68.22 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: 0.97 Total: 12.92 kcal Atomic # 6 Polarization: 9.75 SS G_CDS: 5.78 Total: 15.54 kcal Atomic # 7 Polarization: -103.36 SS G_CDS: -4.29 Total: -107.66 kcal Atomic # 8 Polarization: -33.87 SS G_CDS: -1.03 Total: -34.89 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -71.68 3.46 -68.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496855177.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.979 kcal (2) G-P(sol) polarization free energy of solvation -71.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds