Wall clock time and date at job start Tue Mar 31 2020 08:51:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 120.00258 * 2 1 4 4 O 1.42892 * 109.47805 * 134.99463 * 3 2 1 5 5 C 1.42900 * 114.00369 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47296 * 180.02562 * 5 4 3 7 7 O 1.21283 * 120.00102 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00135 * 180.02562 * 6 5 4 9 9 C 1.46526 * 120.97234 * 0.02562 * 8 6 5 10 10 C 1.51791 * 110.13414 * 233.74769 * 9 8 6 11 11 C 1.49516 * 115.06826 * 318.40087 * 10 9 8 12 12 H 1.09012 * 105.91552 * 156.44893 * 11 10 9 13 13 C 1.52666 * 116.97272 * 40.04340 * 11 10 9 14 14 H 1.09009 * 112.03147 * 82.84660 * 13 11 10 15 15 C 1.56112 * 101.71596 * 202.83881 * 13 11 10 16 16 C 1.55099 * 101.08261 * 37.84969 * 15 13 11 17 17 N 1.46252 * 114.17661 * 272.07616 * 11 10 9 18 18 C 1.36936 * 125.97055 * 315.59130 * 17 11 10 19 19 H 1.08001 * 119.99400 * 349.54369 * 18 17 11 20 20 C 1.38804 * 120.00274 * 169.53641 * 18 17 11 21 21 N 1.31620 * 120.00163 * 350.25848 * 20 18 17 22 22 Si 1.86801 * 119.99973 * 170.25297 * 20 18 17 23 23 H 1.48504 * 109.47198 * 94.47632 * 22 20 18 24 24 H 1.48501 * 109.47153 * 214.47325 * 22 20 18 25 25 H 1.48493 * 109.47190 * 334.47361 * 22 20 18 26 26 C 1.46689 * 120.97668 * 179.97438 * 8 6 5 27 27 H 1.08004 * 119.99569 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00316 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.00155 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.46512 * 14.99308 * 3 2 1 31 31 H 1.09005 * 109.47087 * 255.00279 * 3 2 1 32 32 H 1.08998 * 109.46719 * 60.00249 * 5 4 3 33 33 H 1.08999 * 109.47098 * 300.00078 * 5 4 3 34 34 H 1.08999 * 109.35955 * 113.54873 * 9 8 6 35 35 H 1.08993 * 109.36681 * 353.95385 * 9 8 6 36 36 H 1.08999 * 108.36069 * 79.84792 * 10 9 8 37 37 H 1.08999 * 108.36375 * 197.12874 * 10 9 8 38 38 H 1.08998 * 111.10326 * 279.89154 * 15 13 11 39 39 H 1.09005 * 111.09939 * 155.79704 * 15 13 11 40 40 H 1.08999 * 110.35018 * 204.08425 * 16 15 13 41 41 H 1.08995 * 110.44675 * 81.84228 * 16 15 13 42 42 H 0.97001 * 120.00235 * 180.02562 * 21 20 18 43 43 H 1.09004 * 109.52906 * 1.30607 * 26 8 6 44 44 H 1.09003 * 109.58757 * 241.12595 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2414 0.9527 5 6 3.9083 2.4350 1.0320 6 6 4.9945 2.2567 2.0612 7 8 5.0902 1.2102 2.6668 8 7 5.8598 3.2600 2.3087 9 6 5.7635 4.5333 1.5900 10 6 7.0967 4.8735 0.9490 11 6 8.2962 4.6006 1.7989 12 1 9.1305 4.4785 1.1080 13 6 8.2812 3.3177 2.6262 14 1 8.5894 2.4506 2.0418 15 6 9.3011 3.6584 3.7579 16 6 8.9769 5.1538 4.0112 17 7 8.6739 5.7088 2.6754 18 6 8.7362 7.0298 2.3205 19 1 8.6602 7.3138 1.2812 20 6 8.8970 8.0039 3.2962 21 7 8.7977 7.6832 4.5689 22 14 9.2544 9.7698 2.8032 23 1 7.9820 10.5328 2.7379 24 1 10.1536 10.3920 3.8080 25 1 9.9117 9.7886 1.4718 26 6 6.9247 3.1098 3.3062 27 1 -0.5399 -0.9354 0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3854 2.1160 0.2659 31 1 2.4755 1.4868 -0.9927 32 1 3.2688 3.2697 1.3191 33 1 4.3587 2.6396 0.0607 34 1 5.4866 5.3226 2.2888 35 1 5.0001 4.4546 0.8160 36 1 7.1910 4.2994 0.0273 37 1 7.0942 5.9330 0.6930 38 1 10.3272 3.5324 3.4125 39 1 9.1128 3.0598 4.6492 40 1 9.8388 5.6603 4.4454 41 1 8.1115 5.2501 4.6668 42 1 8.9097 8.3639 5.2508 43 1 6.8822 2.1093 3.7368 44 1 6.7945 3.8515 4.0943 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496855178.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:32 Heat of formation + Delta-G solvation = -24.209804 kcal Electronic energy + Delta-G solvation = -24374.148668 eV Core-core repulsion = 20907.205502 eV Total energy + Delta-G solvation = -3466.943166 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.21062 -38.62578 -37.56964 -35.17450 -34.08606 -32.85011 -31.77678 -29.82477 -28.65633 -27.46357 -25.89215 -24.91887 -23.71370 -22.62220 -20.43024 -20.19546 -19.65235 -18.14418 -17.42988 -16.70456 -16.52542 -16.18158 -15.76292 -15.28917 -15.04789 -14.60086 -14.45732 -13.99364 -13.79673 -13.54381 -13.02350 -12.90038 -12.70577 -12.27418 -12.21895 -12.06650 -11.76023 -11.46545 -11.30303 -11.20373 -10.99805 -10.79013 -10.55402 -10.21616 -10.18961 -10.11415 -9.90933 -9.74279 -9.67100 -9.62225 -9.45922 -8.62039 -8.26400 -6.81495 -5.80091 -3.12279 1.84530 2.74921 2.89911 3.34606 3.41559 3.43027 3.84778 4.43950 4.54695 4.78124 4.82920 4.92959 5.02204 5.10996 5.13064 5.22319 5.24086 5.26055 5.42399 5.48243 5.52353 5.56203 5.70090 5.82815 5.92067 6.08854 6.21464 6.27017 6.28400 6.30823 6.34018 6.40064 6.55953 6.63056 6.69330 6.88586 6.92829 6.97828 7.46615 7.54842 7.65350 7.73295 8.21125 8.34922 9.13681 9.77187 10.46840 11.32993 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025171 B = 0.003440 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.106436 B = 8138.177037 C = 8810.997766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.147 4.147 3 C 0.085 3.915 4 O -0.360 6.360 5 C 0.046 3.954 6 C 0.515 3.485 7 O -0.531 6.531 8 N -0.601 5.601 9 C 0.115 3.885 10 C -0.135 4.135 11 C 0.171 3.829 12 H 0.008 0.992 13 C -0.106 4.106 14 H 0.077 0.923 15 C -0.144 4.144 16 C 0.172 3.828 17 N -0.591 5.591 18 C -0.228 4.228 19 H 0.075 0.925 20 C -0.004 4.004 21 N -0.915 5.915 22 Si 0.908 3.092 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.122 3.878 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.049 0.951 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.062 0.938 41 H 0.031 0.969 42 H 0.253 0.747 43 H 0.085 0.915 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.805 -9.829 -8.586 16.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.165 4.165 3 C 0.009 3.991 4 O -0.278 6.278 5 C -0.034 4.034 6 C 0.302 3.698 7 O -0.408 6.408 8 N -0.335 5.335 9 C -0.008 4.008 10 C -0.175 4.175 11 C 0.064 3.936 12 H 0.026 0.974 13 C -0.126 4.126 14 H 0.095 0.905 15 C -0.183 4.183 16 C 0.048 3.952 17 N -0.316 5.316 18 C -0.356 4.356 19 H 0.093 0.907 20 C -0.202 4.202 21 N -0.561 5.561 22 Si 0.738 3.262 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.206 1.206 26 C 0.000 4.000 27 H 0.122 0.878 28 H 0.116 0.884 29 H 0.136 0.864 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.103 0.897 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.049 0.951 42 H 0.063 0.937 43 H 0.103 0.897 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -10.684 -10.332 -8.044 16.900 hybrid contribution 0.116 1.415 -0.491 1.503 sum -10.568 -8.917 -8.535 16.249 Atomic orbital electron populations 1.23828 0.95505 1.02273 1.00315 1.22730 0.95606 0.98239 0.99963 1.21612 0.88887 0.96136 0.92465 1.88034 1.44227 1.35247 1.60334 1.22261 0.93271 0.88902 0.98960 1.20070 0.82439 0.83645 0.83642 1.90691 1.72713 1.26830 1.50520 1.47919 1.30799 1.14315 1.40483 1.21349 0.98289 0.85099 0.96016 1.21233 0.94800 1.03072 0.98395 1.19464 0.93737 0.88096 0.92345 0.97419 1.22331 0.95046 0.97514 0.97717 0.90505 1.23278 0.97891 1.00145 0.96963 1.21476 0.99431 0.86958 0.87358 1.44526 1.77421 1.01888 1.07798 1.18893 1.43738 0.80624 0.92345 0.90686 1.24817 1.02160 0.97837 0.95337 1.69951 1.54919 1.32517 0.98736 0.86181 0.77794 0.84766 0.77459 1.21670 1.21657 1.20636 1.21697 0.85038 1.02906 0.90321 0.87765 0.88414 0.86428 0.92573 0.92105 0.90269 0.90235 0.90671 0.91084 0.93223 0.89702 0.91930 0.91848 0.91935 0.95130 0.93682 0.89710 0.90190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.36 14.31 29.02 0.42 -0.95 16 2 C -0.15 -1.36 9.89 -36.02 -0.36 -1.71 16 3 C 0.09 0.82 6.35 36.01 0.23 1.05 16 4 O -0.36 -4.94 9.86 -55.14 -0.54 -5.48 16 5 C 0.05 0.56 4.77 36.00 0.17 0.73 16 6 C 0.52 8.38 7.78 -10.99 -0.09 8.30 16 7 O -0.53 -10.66 15.93 -14.35 -0.23 -10.89 16 8 N -0.60 -9.63 2.94 -174.15 -0.51 -10.14 16 9 C 0.12 1.69 6.39 -4.64 -0.03 1.66 16 10 C -0.14 -2.24 5.62 -29.07 -0.16 -2.40 16 11 C 0.17 3.34 2.63 -69.96 -0.18 3.16 16 12 H 0.01 0.17 8.07 -51.92 -0.42 -0.25 16 13 C -0.11 -1.86 3.68 -89.04 -0.33 -2.19 16 14 H 0.08 1.26 8.14 -51.92 -0.42 0.84 16 15 C -0.14 -2.62 6.46 -23.95 -0.15 -2.77 16 16 C 0.17 3.96 4.94 -2.23 -0.01 3.95 16 17 N -0.59 -14.01 3.32 -165.69 -0.55 -14.56 16 18 C -0.23 -5.91 9.37 -15.06 -0.14 -6.05 16 19 H 0.08 1.89 7.37 -52.49 -0.39 1.50 16 20 C 0.00 -0.12 5.41 -17.43 -0.09 -0.21 16 21 N -0.91 -25.79 10.76 55.49 0.60 -25.19 16 22 Si 0.91 21.21 29.56 -169.99 -5.03 16.18 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 26 C 0.12 2.11 5.55 -3.86 -0.02 2.09 16 27 H 0.10 0.64 8.06 -52.48 -0.42 0.22 16 28 H 0.10 0.63 7.90 -52.49 -0.41 0.21 16 29 H 0.12 1.10 8.06 -52.48 -0.42 0.68 16 30 H 0.06 0.46 7.86 -51.93 -0.41 0.05 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.80 7.94 -51.93 -0.41 0.39 16 33 H 0.08 0.79 7.71 -51.93 -0.40 0.39 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.07 0.79 5.95 -51.93 -0.31 0.48 16 36 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 1.52 6.81 -51.93 -0.35 1.17 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 1.03 7.98 -51.93 -0.41 0.62 16 40 H 0.06 1.61 7.17 -51.93 -0.37 1.24 16 41 H 0.03 0.76 6.95 -51.93 -0.36 0.40 16 42 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.08 1.48 7.00 -51.93 -0.36 1.11 16 44 H 0.08 1.51 6.49 -51.93 -0.34 1.17 16 LS Contribution 347.20 15.07 5.23 5.23 Total: -1.00 -31.55 347.20 -8.83 -40.38 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.05 Total: -0.19 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -0.75 Total: 4.65 kcal Atomic # 7 Polarization: -49.42 SS G_CDS: -0.46 Total: -49.89 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.77 Total: -16.37 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.03 Total: 16.18 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -31.55 -8.83 -40.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496855178.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.167 kcal (2) G-P(sol) polarization free energy of solvation -31.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds