Wall clock time and date at job start Tue Mar 31 2020 08:51:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50702 * 120.00258 * 2 1 4 4 O 1.42892 * 109.47805 * 134.99463 * 3 2 1 5 5 C 1.42900 * 114.00369 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47296 * 180.02562 * 5 4 3 7 7 O 1.21283 * 120.00102 * 0.02562 * 6 5 4 8 8 N 1.34780 * 120.00135 * 180.02562 * 6 5 4 9 9 C 1.46526 * 120.97234 * 0.02562 * 8 6 5 10 10 C 1.51791 * 110.13414 * 233.74769 * 9 8 6 11 11 C 1.49516 * 115.06826 * 318.40087 * 10 9 8 12 12 H 1.09012 * 105.91552 * 156.44893 * 11 10 9 13 13 C 1.52666 * 116.97272 * 40.04340 * 11 10 9 14 14 H 1.09009 * 112.03147 * 82.84660 * 13 11 10 15 15 C 1.56112 * 101.71596 * 202.83881 * 13 11 10 16 16 C 1.55099 * 101.08261 * 37.84969 * 15 13 11 17 17 N 1.46252 * 114.17661 * 272.07616 * 11 10 9 18 18 C 1.36936 * 125.97055 * 315.59130 * 17 11 10 19 19 H 1.08001 * 119.99400 * 349.54369 * 18 17 11 20 20 C 1.38804 * 120.00274 * 169.53641 * 18 17 11 21 21 N 1.31620 * 120.00163 * 350.25848 * 20 18 17 22 22 Si 1.86801 * 119.99973 * 170.25297 * 20 18 17 23 23 H 1.48504 * 109.47198 * 94.47632 * 22 20 18 24 24 H 1.48501 * 109.47153 * 214.47325 * 22 20 18 25 25 H 1.48493 * 109.47190 * 334.47361 * 22 20 18 26 26 C 1.46689 * 120.97668 * 179.97438 * 8 6 5 27 27 H 1.08004 * 119.99569 * 180.02562 * 1 2 3 28 28 H 1.07996 * 120.00316 * 0.02562 * 1 2 3 29 29 H 1.08005 * 120.00155 * 179.97438 * 2 1 3 30 30 H 1.09002 * 109.46512 * 14.99308 * 3 2 1 31 31 H 1.09005 * 109.47087 * 255.00279 * 3 2 1 32 32 H 1.08998 * 109.46719 * 60.00249 * 5 4 3 33 33 H 1.08999 * 109.47098 * 300.00078 * 5 4 3 34 34 H 1.08999 * 109.35955 * 113.54873 * 9 8 6 35 35 H 1.08993 * 109.36681 * 353.95385 * 9 8 6 36 36 H 1.08999 * 108.36069 * 79.84792 * 10 9 8 37 37 H 1.08999 * 108.36375 * 197.12874 * 10 9 8 38 38 H 1.08998 * 111.10326 * 279.89154 * 15 13 11 39 39 H 1.09005 * 111.09939 * 155.79704 * 15 13 11 40 40 H 1.08999 * 110.35018 * 204.08425 * 16 15 13 41 41 H 1.08995 * 110.44675 * 81.84228 * 16 15 13 42 42 H 0.97001 * 120.00235 * 180.02562 * 21 20 18 43 43 H 1.09004 * 109.52906 * 1.30607 * 26 8 6 44 44 H 1.09003 * 109.58757 * 241.12595 * 26 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 8 3.1266 1.2414 0.9527 5 6 3.9083 2.4350 1.0320 6 6 4.9945 2.2567 2.0612 7 8 5.0902 1.2102 2.6668 8 7 5.8598 3.2600 2.3087 9 6 5.7635 4.5333 1.5900 10 6 7.0967 4.8735 0.9490 11 6 8.2962 4.6006 1.7989 12 1 9.1305 4.4785 1.1080 13 6 8.2812 3.3177 2.6262 14 1 8.5894 2.4506 2.0418 15 6 9.3011 3.6584 3.7579 16 6 8.9769 5.1538 4.0112 17 7 8.6739 5.7088 2.6754 18 6 8.7362 7.0298 2.3205 19 1 8.6602 7.3138 1.2812 20 6 8.8970 8.0039 3.2962 21 7 8.7977 7.6832 4.5689 22 14 9.2544 9.7698 2.8032 23 1 7.9820 10.5328 2.7379 24 1 10.1536 10.3920 3.8080 25 1 9.9117 9.7886 1.4718 26 6 6.9247 3.1098 3.3062 27 1 -0.5399 -0.9354 0.0004 28 1 -0.5400 0.9352 -0.0004 29 1 1.8500 -0.9353 0.0004 30 1 1.3854 2.1160 0.2659 31 1 2.4755 1.4868 -0.9927 32 1 3.2688 3.2697 1.3191 33 1 4.3587 2.6396 0.0607 34 1 5.4866 5.3226 2.2888 35 1 5.0001 4.4546 0.8160 36 1 7.1910 4.2994 0.0273 37 1 7.0942 5.9330 0.6930 38 1 10.3272 3.5324 3.4125 39 1 9.1128 3.0598 4.6492 40 1 9.8388 5.6603 4.4454 41 1 8.1115 5.2501 4.6668 42 1 8.9097 8.3639 5.2508 43 1 6.8822 2.1093 3.7368 44 1 6.7945 3.8515 4.0943 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496855178.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:31 Heat of formation + Delta-G solvation = -43.221539 kcal Electronic energy + Delta-G solvation = -24374.973079 eV Core-core repulsion = 20907.205502 eV Total energy + Delta-G solvation = -3467.767577 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.53953 -39.93122 -38.63110 -36.64714 -34.80564 -34.58018 -33.30179 -31.40557 -30.02361 -28.79908 -26.92873 -26.40778 -25.19335 -24.03712 -21.95676 -21.29071 -20.75626 -19.59851 -18.57550 -18.26922 -17.55251 -17.36699 -16.92722 -16.75408 -16.37679 -15.99833 -15.74276 -15.55574 -15.02138 -14.60712 -14.46362 -14.19592 -13.95488 -13.78831 -13.33998 -13.15117 -13.13403 -13.04883 -12.87777 -12.70260 -12.49590 -12.15464 -11.96047 -11.86766 -11.64437 -11.54479 -11.50137 -11.28868 -10.97287 -10.76980 -10.61899 -10.24024 -9.62660 -8.75524 -7.83119 -5.15989 1.20620 1.48154 1.50052 1.53057 1.58591 1.80154 2.52465 2.92891 3.35870 3.50742 3.66526 3.77503 3.85454 4.03435 4.06359 4.10386 4.20277 4.22479 4.26578 4.29156 4.41275 4.47893 4.55807 4.58022 4.63073 4.75419 4.79628 4.92987 4.97810 5.00056 5.10432 5.14917 5.33502 5.41412 5.51594 5.57516 5.63632 5.67885 5.72076 5.77018 6.10668 6.25648 6.43628 7.10992 7.12747 7.82838 8.52005 9.29421 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025171 B = 0.003440 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.106436 B = 8138.177037 C = 8810.997766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.176 4.176 3 C 0.082 3.918 4 O -0.395 6.395 5 C 0.049 3.951 6 C 0.511 3.489 7 O -0.576 6.576 8 N -0.601 5.601 9 C 0.120 3.880 10 C -0.133 4.133 11 C 0.164 3.836 12 H 0.002 0.998 13 C -0.094 4.094 14 H 0.098 0.902 15 C -0.131 4.131 16 C 0.180 3.820 17 N -0.609 5.609 18 C -0.226 4.226 19 H 0.083 0.917 20 C -0.063 4.063 21 N -0.948 5.948 22 Si 0.970 3.030 23 H -0.287 1.287 24 H -0.300 1.300 25 H -0.269 1.269 26 C 0.127 3.873 27 H 0.115 0.885 28 H 0.111 0.889 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.106 0.894 33 H 0.112 0.888 34 H 0.053 0.947 35 H 0.119 0.881 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.024 0.976 41 H 0.003 0.997 42 H 0.245 0.755 43 H 0.083 0.917 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.274 -10.265 -11.153 19.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.194 4.194 3 C 0.006 3.994 4 O -0.314 6.314 5 C -0.030 4.030 6 C 0.301 3.699 7 O -0.455 6.455 8 N -0.333 5.333 9 C -0.002 4.002 10 C -0.172 4.172 11 C 0.058 3.942 12 H 0.019 0.981 13 C -0.114 4.114 14 H 0.116 0.884 15 C -0.170 4.170 16 C 0.054 3.946 17 N -0.334 5.334 18 C -0.355 4.355 19 H 0.101 0.899 20 C -0.257 4.257 21 N -0.597 5.597 22 Si 0.799 3.201 23 H -0.214 1.214 24 H -0.227 1.227 25 H -0.194 1.194 26 C 0.004 3.996 27 H 0.133 0.867 28 H 0.129 0.871 29 H 0.125 0.875 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.124 0.876 33 H 0.130 0.870 34 H 0.072 0.928 35 H 0.137 0.863 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.101 0.899 40 H 0.043 0.957 41 H 0.021 0.979 42 H 0.054 0.946 43 H 0.101 0.899 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.167 -10.773 -10.666 19.439 hybrid contribution 0.538 1.484 0.282 1.604 sum -11.630 -9.289 -10.384 18.148 Atomic orbital electron populations 1.24056 0.94998 1.03498 0.97864 1.22788 0.96327 0.98035 1.02289 1.21821 0.88300 0.96720 0.92514 1.87993 1.45457 1.36142 1.61826 1.22335 0.92461 0.89334 0.98829 1.20873 0.82715 0.82618 0.83727 1.90669 1.73885 1.28604 1.52387 1.47952 1.30435 1.14889 1.40072 1.21405 0.98568 0.83782 0.96493 1.21154 0.94295 1.02776 0.99017 1.19702 0.95016 0.87478 0.92012 0.98052 1.22289 0.94760 0.97268 0.97091 0.88360 1.23152 0.98636 0.96786 0.98388 1.21231 0.96683 0.89716 0.86924 1.44755 1.77838 1.02262 1.08521 1.19252 1.41853 0.81824 0.92621 0.89918 1.25568 1.03192 1.01503 0.95405 1.70149 1.56860 1.33098 0.99584 0.85192 0.77317 0.80441 0.77140 1.21388 1.22744 1.19401 1.21477 0.85716 1.01969 0.90390 0.86665 0.87067 0.87503 0.90950 0.90387 0.87635 0.87036 0.92840 0.86319 0.90109 0.91047 0.91166 0.89865 0.95722 0.97931 0.94586 0.89869 0.92478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 14.31 67.79 0.97 -1.13 16 2 C -0.18 -2.95 9.89 25.65 0.25 -2.69 16 3 C 0.08 1.35 6.35 71.24 0.45 1.80 16 4 O -0.39 -9.90 9.86 -129.94 -1.28 -11.18 16 5 C 0.05 1.03 4.77 71.23 0.34 1.37 16 6 C 0.51 15.57 7.78 87.65 0.68 16.26 16 7 O -0.58 -22.69 15.93 16.00 0.25 -22.44 16 8 N -0.60 -18.10 2.94 -823.27 -2.42 -20.52 16 9 C 0.12 3.20 6.39 85.98 0.55 3.75 16 10 C -0.13 -4.06 5.62 29.08 0.16 -3.90 16 11 C 0.16 6.21 2.63 43.81 0.12 6.33 16 12 H 0.00 0.07 8.07 -2.38 -0.02 0.05 16 13 C -0.09 -3.17 3.68 -9.77 -0.04 -3.21 16 14 H 0.10 2.96 8.14 -2.38 -0.02 2.94 16 15 C -0.13 -4.73 6.46 32.39 0.21 -4.52 16 16 C 0.18 8.54 4.94 86.85 0.43 8.97 16 17 N -0.61 -29.12 3.32 -678.12 -2.25 -31.37 16 18 C -0.23 -11.83 9.37 84.03 0.79 -11.04 16 19 H 0.08 4.10 7.37 -2.91 -0.02 4.08 16 20 C -0.06 -3.45 5.41 84.86 0.46 -2.99 16 21 N -0.95 -55.55 10.76 21.65 0.23 -55.31 16 22 Si 0.97 44.20 29.56 68.60 2.03 46.22 16 23 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 24 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 26 C 0.13 4.32 5.55 86.40 0.48 4.80 16 27 H 0.12 1.15 8.06 -2.91 -0.02 1.13 16 28 H 0.11 1.08 7.90 -2.91 -0.02 1.06 16 29 H 0.11 1.95 8.06 -2.91 -0.02 1.92 16 30 H 0.07 0.93 7.86 -2.39 -0.02 0.91 16 31 H 0.08 0.97 8.14 -2.38 -0.02 0.95 16 32 H 0.11 1.65 7.94 -2.39 -0.02 1.64 16 33 H 0.11 1.62 7.71 -2.39 -0.02 1.60 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.12 2.05 5.95 -2.39 -0.01 2.04 16 36 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.07 2.41 6.81 -2.39 -0.02 2.40 16 38 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 39 H 0.08 2.67 7.98 -2.38 -0.02 2.65 16 40 H 0.02 1.33 7.17 -2.39 -0.02 1.31 16 41 H 0.00 0.14 6.95 -2.39 -0.02 0.13 16 42 H 0.24 14.11 8.31 -92.71 -0.77 13.34 16 43 H 0.08 2.87 7.00 -2.39 -0.02 2.85 16 44 H 0.06 2.20 6.49 -2.39 -0.02 2.19 16 Total: -1.00 -71.35 347.20 3.39 -67.96 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.97 Total: 12.86 kcal Atomic # 6 Polarization: 7.93 SS G_CDS: 5.85 Total: 13.78 kcal Atomic # 7 Polarization: -102.77 SS G_CDS: -4.44 Total: -107.21 kcal Atomic # 8 Polarization: -32.59 SS G_CDS: -1.03 Total: -33.62 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Total: -71.35 3.39 -67.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496855178.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.737 kcal (2) G-P(sol) polarization free energy of solvation -71.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds