Wall clock time and date at job start Tue Mar 31 2020 06:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47473 * 180.02562 * 3 2 1 5 5 N 1.39927 * 125.74626 * 269.69682 * 4 3 2 6 6 C 1.30428 * 108.92032 * 179.80897 * 5 4 3 7 7 C 1.41345 * 108.01294 * 0.44091 * 6 5 4 8 8 C 1.47281 * 126.42928 * 179.68727 * 7 6 5 9 9 O 1.21528 * 120.00432 * 180.02562 * 8 7 6 10 10 O 1.34757 * 119.99957 * 0.03540 * 8 7 6 11 11 C 1.45197 * 117.00145 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47307 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.46942 * 300.00071 * 12 11 10 14 14 C 1.53008 * 109.47164 * 59.99817 * 12 11 10 15 15 C 1.50694 * 109.47322 * 179.97438 * 12 11 10 16 16 H 1.08001 * 120.00084 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00148 * 179.97438 * 15 12 11 18 18 N 1.31513 * 119.99888 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 120.00104 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.46979 * 60.00409 * 19 17 15 21 21 H 1.48506 * 109.47000 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47009 * 300.00481 * 19 17 15 23 23 C 1.34228 * 125.73885 * 89.99723 * 4 3 2 24 24 C 1.50700 * 126.30013 * 359.97438 * 23 4 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.07995 * 125.99352 * 180.15978 * 6 5 4 33 33 H 1.09002 * 109.46767 * 300.00219 * 11 10 8 34 34 H 1.08990 * 109.47065 * 60.00361 * 11 10 8 35 35 H 1.09003 * 109.47173 * 59.99630 * 13 12 11 36 36 H 1.09003 * 109.47604 * 179.97438 * 13 12 11 37 37 H 1.08999 * 109.46822 * 300.00093 * 13 12 11 38 38 H 1.08998 * 109.46725 * 60.00313 * 14 12 11 39 39 H 1.08996 * 109.46574 * 180.02562 * 14 12 11 40 40 H 1.09003 * 109.46982 * 300.00389 * 14 12 11 41 41 H 0.97003 * 120.00102 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.47193 * 89.99434 * 24 23 4 43 43 H 1.08991 * 109.47076 * 209.99980 * 24 23 4 44 44 H 1.09001 * 109.46776 * 329.99670 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 7 4.3229 1.4485 1.1347 6 6 5.5712 1.4425 0.7566 7 6 5.5999 1.4428 -0.6565 8 6 6.8024 1.4436 -1.5068 9 8 6.6910 1.4442 -2.7170 10 8 8.0264 1.4435 -0.9430 11 6 9.1664 1.4450 -1.8422 12 6 10.4602 1.4440 -1.0254 13 6 10.5062 2.6920 -0.1415 14 6 10.5066 0.1935 -0.1450 15 6 11.6434 1.4449 -1.9586 16 1 11.4882 1.4464 -3.0274 17 6 12.9242 1.4448 -1.4480 18 7 13.1132 1.4434 -0.1465 19 14 14.3909 1.4466 -2.6048 20 1 14.3456 2.6600 -3.4596 21 1 15.6466 1.4455 -1.8120 22 1 14.3463 0.2351 -3.4624 23 6 4.2885 1.4428 -1.0905 24 6 3.8232 1.4423 -2.5238 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 6.4319 1.4424 1.4089 33 1 9.1338 0.5556 -2.4716 34 1 9.1332 2.3356 -2.4695 35 1 9.6503 2.6909 0.5335 36 1 11.4277 2.6912 0.4408 37 1 10.4731 3.5828 -0.7687 38 1 10.4739 -0.6956 -0.7747 39 1 11.4281 0.1931 0.4372 40 1 9.6507 0.1924 0.5300 41 1 14.0142 1.4429 0.2127 42 1 3.7105 2.4699 -2.8696 43 1 4.5577 0.9288 -3.1441 44 1 2.8648 0.9280 -2.5945 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001525295475.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:04 Heat of formation + Delta-G solvation = -33.050561 kcal Electronic energy + Delta-G solvation = -23769.059065 eV Core-core repulsion = 20301.732535 eV Total energy + Delta-G solvation = -3467.326530 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.53922 -39.36623 -36.41598 -35.77449 -34.70860 -32.58726 -31.56359 -31.12967 -27.85616 -26.69387 -25.55358 -25.54607 -24.98970 -22.71538 -22.38691 -20.65635 -19.44733 -18.74430 -17.58791 -16.20438 -15.90456 -15.82339 -15.67856 -15.22213 -15.16526 -14.58603 -14.38440 -13.75153 -13.34457 -13.11345 -12.92483 -12.83481 -12.71898 -12.63784 -12.47223 -12.23844 -11.81405 -11.76440 -11.38489 -11.32641 -11.14845 -10.89573 -10.81002 -10.69538 -10.33958 -10.15350 -9.90563 -9.79213 -9.48533 -9.32901 -9.23712 -8.70063 -8.67982 -8.32358 -5.96935 -4.08315 1.39714 2.14224 2.19169 3.32699 3.36886 3.37541 3.48677 3.53281 4.20146 4.32344 4.41877 4.43793 4.65474 4.73002 4.82922 4.97593 5.09774 5.19199 5.29237 5.29466 5.36027 5.51244 5.52998 5.61801 5.72283 5.82629 5.96466 6.20402 6.20506 6.43663 6.56791 6.71499 6.83813 7.05789 7.17944 7.21916 7.25415 7.48032 7.50999 7.69273 7.75088 8.11755 8.22815 8.41422 8.49094 8.91552 9.56785 11.04194 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.039009 B = 0.002932 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.613529 B = 9548.263187 C = 9921.206974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.143 4.143 3 C 0.129 3.871 4 N -0.362 5.362 5 N -0.304 5.304 6 C 0.108 3.892 7 C -0.276 4.276 8 C 0.536 3.464 9 O -0.531 6.531 10 O -0.344 6.344 11 C 0.087 3.913 12 C 0.070 3.930 13 C -0.129 4.129 14 C -0.129 4.129 15 C -0.511 4.511 16 H 0.056 0.944 17 C 0.068 3.932 18 N -0.883 5.883 19 Si 0.895 3.105 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C 0.158 3.842 24 C -0.101 4.101 25 H 0.058 0.942 26 H 0.063 0.937 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.199 0.801 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.017 0.983 36 H 0.083 0.917 37 H 0.022 0.978 38 H 0.022 0.978 39 H 0.083 0.917 40 H 0.017 0.983 41 H 0.261 0.739 42 H 0.087 0.913 43 H 0.107 0.893 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.032 -0.821 0.696 23.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.181 4.181 3 C 0.008 3.992 4 N -0.142 5.142 5 N -0.123 5.123 6 C -0.080 4.080 7 C -0.289 4.289 8 C 0.381 3.619 9 O -0.424 6.424 10 O -0.259 6.259 11 C 0.014 3.986 12 C 0.070 3.930 13 C -0.187 4.187 14 C -0.187 4.187 15 C -0.549 4.549 16 H 0.074 0.926 17 C -0.134 4.134 18 N -0.521 5.521 19 Si 0.723 3.277 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C 0.026 3.974 24 C -0.159 4.159 25 H 0.077 0.923 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.088 0.912 30 H 0.113 0.887 31 H 0.118 0.882 32 H 0.216 0.784 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.036 0.964 36 H 0.102 0.898 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.102 0.898 40 H 0.036 0.964 41 H 0.071 0.929 42 H 0.106 0.894 43 H 0.126 0.874 44 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -23.802 -0.807 1.513 23.864 hybrid contribution 1.446 0.005 -1.389 2.005 sum -22.356 -0.802 0.124 22.371 Atomic orbital electron populations 1.21694 0.94103 1.02634 1.02258 1.21956 0.96809 0.95620 1.03754 1.21872 0.73760 0.98775 1.04802 1.48505 1.06630 1.55606 1.03412 1.77215 1.01928 1.25960 1.07156 1.24254 0.95122 0.94651 0.93958 1.19243 0.90797 1.25257 0.93596 1.19924 0.83623 0.72490 0.85837 1.90738 1.87799 1.48330 1.15483 1.86559 1.14301 1.82813 1.42253 1.23631 0.82539 1.00490 0.91909 1.18231 0.87800 0.93740 0.93212 1.21767 1.01084 0.96833 0.99023 1.21768 1.01081 0.96830 0.99022 1.20909 0.89981 1.51568 0.92474 0.92586 1.24853 0.98636 0.94767 0.95110 1.69823 1.21467 1.50090 1.10685 0.86613 0.81709 0.78643 0.80758 1.20274 1.21257 1.20279 1.21463 0.89953 0.94825 0.91181 1.20719 1.02538 1.04225 0.88448 0.92267 0.91842 0.92183 0.90665 0.91168 0.88707 0.88243 0.78406 0.92638 0.92633 0.96370 0.89812 0.95878 0.95879 0.89812 0.96377 0.92898 0.89442 0.87414 0.91093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 9.91 37.16 0.37 -0.29 16 2 C -0.14 -0.93 6.26 -26.73 -0.17 -1.10 16 3 C 0.13 0.95 6.03 -4.04 -0.02 0.92 16 4 N -0.36 -4.26 3.58 -56.59 -0.20 -4.46 16 5 N -0.30 -4.27 12.50 30.87 0.39 -3.89 16 6 C 0.11 1.59 11.87 -16.97 -0.20 1.39 16 7 C -0.28 -4.40 6.13 -105.08 -0.64 -5.05 16 8 C 0.54 10.19 7.95 34.41 0.27 10.46 16 9 O -0.53 -10.77 14.63 -19.29 -0.28 -11.05 16 10 O -0.34 -7.14 8.73 -40.65 -0.35 -7.50 16 11 C 0.09 1.98 4.27 37.16 0.16 2.14 16 12 C 0.07 1.75 0.58 -155.66 -0.09 1.66 16 13 C -0.13 -3.16 8.11 37.16 0.30 -2.86 16 14 C -0.13 -3.16 8.11 37.16 0.30 -2.86 16 15 C -0.51 -13.80 8.01 -34.44 -0.28 -14.08 16 16 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 17 C 0.07 1.83 5.15 -17.82 -0.09 1.74 16 18 N -0.88 -24.20 9.35 55.43 0.52 -23.68 16 19 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C 0.16 2.05 7.01 -81.58 -0.57 1.48 16 24 C -0.10 -1.02 9.34 36.01 0.34 -0.68 16 25 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.49 7.62 -51.93 -0.40 0.09 16 31 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.20 2.63 8.06 -52.49 -0.42 2.21 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 34 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.02 0.40 7.68 -51.93 -0.40 0.00 16 36 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.08 2.21 6.07 -51.93 -0.32 1.89 16 40 H 0.02 0.39 7.68 -51.93 -0.40 0.00 16 41 H 0.26 6.87 8.31 -40.82 -0.34 6.54 16 42 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.11 1.31 6.50 -51.93 -0.34 0.97 16 44 H 0.07 0.49 7.70 -51.93 -0.40 0.09 16 LS Contribution 361.34 15.07 5.45 5.45 Total: -1.00 -30.69 361.34 -7.01 -37.71 By element: Atomic # 1 Polarization: 5.74 SS G_CDS: -7.17 Total: -1.44 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: -0.33 Total: -7.13 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.70 Total: -32.03 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.64 Total: -18.55 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.69 -7.01 -37.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525295475.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.655 kcal (2) G-P(sol) polarization free energy of solvation -30.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds