Wall clock time and date at job start Tue Mar 31 2020 06:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47473 * 180.02562 * 3 2 1 5 5 N 1.39927 * 125.74626 * 269.69682 * 4 3 2 6 6 C 1.30428 * 108.92032 * 179.80897 * 5 4 3 7 7 C 1.41345 * 108.01294 * 0.44091 * 6 5 4 8 8 C 1.47281 * 126.42928 * 179.68727 * 7 6 5 9 9 O 1.21528 * 120.00432 * 180.02562 * 8 7 6 10 10 O 1.34757 * 119.99957 * 0.03540 * 8 7 6 11 11 C 1.45197 * 117.00145 * 180.02562 * 10 8 7 12 12 C 1.53003 * 109.47307 * 180.02562 * 11 10 8 13 13 C 1.52998 * 109.46942 * 300.00071 * 12 11 10 14 14 C 1.53008 * 109.47164 * 59.99817 * 12 11 10 15 15 C 1.50694 * 109.47322 * 179.97438 * 12 11 10 16 16 H 1.08001 * 120.00084 * 0.02562 * 15 12 11 17 17 C 1.37875 * 120.00148 * 179.97438 * 15 12 11 18 18 N 1.31513 * 119.99888 * 0.02562 * 17 15 12 19 19 Si 1.86801 * 120.00104 * 180.02562 * 17 15 12 20 20 H 1.48495 * 109.46979 * 60.00409 * 19 17 15 21 21 H 1.48506 * 109.47000 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47009 * 300.00481 * 19 17 15 23 23 C 1.34228 * 125.73885 * 89.99723 * 4 3 2 24 24 C 1.50700 * 126.30013 * 359.97438 * 23 4 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 30 30 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 31 31 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 32 32 H 1.07995 * 125.99352 * 180.15978 * 6 5 4 33 33 H 1.09002 * 109.46767 * 300.00219 * 11 10 8 34 34 H 1.08990 * 109.47065 * 60.00361 * 11 10 8 35 35 H 1.09003 * 109.47173 * 59.99630 * 13 12 11 36 36 H 1.09003 * 109.47604 * 179.97438 * 13 12 11 37 37 H 1.08999 * 109.46822 * 300.00093 * 13 12 11 38 38 H 1.08998 * 109.46725 * 60.00313 * 14 12 11 39 39 H 1.08996 * 109.46574 * 180.02562 * 14 12 11 40 40 H 1.09003 * 109.46982 * 300.00389 * 14 12 11 41 41 H 0.97003 * 120.00102 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.47193 * 89.99434 * 24 23 4 43 43 H 1.08991 * 109.47076 * 209.99980 * 24 23 4 44 44 H 1.09001 * 109.46776 * 329.99670 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 7 4.3229 1.4485 1.1347 6 6 5.5712 1.4425 0.7566 7 6 5.5999 1.4428 -0.6565 8 6 6.8024 1.4436 -1.5068 9 8 6.6910 1.4442 -2.7170 10 8 8.0264 1.4435 -0.9430 11 6 9.1664 1.4450 -1.8422 12 6 10.4602 1.4440 -1.0254 13 6 10.5062 2.6920 -0.1415 14 6 10.5066 0.1935 -0.1450 15 6 11.6434 1.4449 -1.9586 16 1 11.4882 1.4464 -3.0274 17 6 12.9242 1.4448 -1.4480 18 7 13.1132 1.4434 -0.1465 19 14 14.3909 1.4466 -2.6048 20 1 14.3456 2.6600 -3.4596 21 1 15.6466 1.4455 -1.8120 22 1 14.3463 0.2351 -3.4624 23 6 4.2885 1.4428 -1.0905 24 6 3.8232 1.4423 -2.5238 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9564 0.8899 32 1 6.4319 1.4424 1.4089 33 1 9.1338 0.5556 -2.4716 34 1 9.1332 2.3356 -2.4695 35 1 9.6503 2.6909 0.5335 36 1 11.4277 2.6912 0.4408 37 1 10.4731 3.5828 -0.7687 38 1 10.4739 -0.6956 -0.7747 39 1 11.4281 0.1931 0.4372 40 1 9.6507 0.1924 0.5300 41 1 14.0142 1.4429 0.2127 42 1 3.7105 2.4699 -2.8696 43 1 4.5577 0.9288 -3.1441 44 1 2.8648 0.9280 -2.5945 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001525295475.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:43:04 Heat of formation + Delta-G solvation = -48.766396 kcal Electronic energy + Delta-G solvation = -23769.740555 eV Core-core repulsion = 20301.732535 eV Total energy + Delta-G solvation = -3468.008020 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.60058 -40.90788 -38.15777 -36.51868 -36.42733 -33.49674 -33.25155 -32.35248 -28.94079 -27.54933 -27.53819 -27.30438 -26.80905 -23.96558 -23.05451 -21.78023 -20.65529 -20.53344 -18.89307 -17.79047 -17.40765 -17.30001 -16.96506 -16.52173 -16.33124 -15.92946 -15.25801 -14.94008 -14.66211 -14.63517 -14.27426 -14.14860 -13.69869 -13.57824 -13.33952 -13.26490 -13.11163 -13.05618 -12.92142 -12.77908 -12.62644 -12.31215 -12.28683 -12.11317 -12.01891 -11.71183 -11.66539 -11.43539 -11.21424 -11.11702 -10.70856 -10.43917 -10.37572 -9.80376 -8.01711 -6.19813 0.28936 0.99120 1.24595 1.46375 1.46606 1.54020 1.99903 2.18145 2.48387 3.21443 3.45712 3.49903 3.82494 3.86935 3.93184 4.11306 4.23816 4.33166 4.33972 4.44768 4.50247 4.56492 4.60363 4.66496 4.77283 4.83827 4.92536 5.04683 5.08672 5.11318 5.14325 5.24088 5.26770 5.33630 5.36892 5.42383 5.64020 5.67095 5.72291 5.84451 6.10694 6.21172 6.40024 6.44049 6.83069 6.94642 7.47848 8.97801 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.039009 B = 0.002932 C = 0.002822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.613529 B = 9548.263187 C = 9921.206974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.117 3.883 4 N -0.351 5.351 5 N -0.317 5.317 6 C 0.103 3.897 7 C -0.313 4.313 8 C 0.534 3.466 9 O -0.550 6.550 10 O -0.350 6.350 11 C 0.100 3.900 12 C 0.062 3.938 13 C -0.119 4.119 14 C -0.119 4.119 15 C -0.533 4.533 16 H 0.050 0.950 17 C 0.027 3.973 18 N -0.900 5.900 19 Si 0.953 3.047 20 H -0.274 1.274 21 H -0.282 1.282 22 H -0.274 1.274 23 C 0.173 3.827 24 C -0.100 4.100 25 H 0.074 0.926 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.068 0.932 30 H 0.127 0.873 31 H 0.109 0.891 32 H 0.204 0.796 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.032 0.968 36 H 0.063 0.937 37 H 0.019 0.981 38 H 0.019 0.981 39 H 0.063 0.937 40 H 0.032 0.968 41 H 0.262 0.738 42 H 0.103 0.897 43 H 0.086 0.914 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.235 -0.644 0.171 25.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.176 4.176 3 C -0.002 4.002 4 N -0.130 5.130 5 N -0.136 5.136 6 C -0.085 4.085 7 C -0.326 4.326 8 C 0.381 3.619 9 O -0.443 6.443 10 O -0.265 6.265 11 C 0.027 3.973 12 C 0.062 3.938 13 C -0.176 4.176 14 C -0.176 4.176 15 C -0.571 4.571 16 H 0.068 0.932 17 C -0.173 4.173 18 N -0.538 5.538 19 Si 0.779 3.221 20 H -0.200 1.200 21 H -0.207 1.207 22 H -0.200 1.200 23 C 0.038 3.962 24 C -0.157 4.157 25 H 0.093 0.907 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.145 0.855 31 H 0.127 0.873 32 H 0.220 0.780 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.038 0.962 38 H 0.038 0.962 39 H 0.082 0.918 40 H 0.051 0.949 41 H 0.071 0.929 42 H 0.121 0.879 43 H 0.105 0.895 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -26.044 -0.632 1.009 26.071 hybrid contribution 1.964 -0.058 -1.197 2.301 sum -24.080 -0.690 -0.188 24.090 Atomic orbital electron populations 1.21672 0.92199 1.03063 1.03272 1.21903 0.98305 0.94687 1.02704 1.22378 0.71031 0.99848 1.06904 1.48891 1.08011 1.53697 1.02380 1.77172 1.01829 1.26170 1.08393 1.24359 0.95735 0.94717 0.93684 1.19220 0.90713 1.28762 0.93865 1.20398 0.83583 0.71773 0.86122 1.90720 1.87848 1.49471 1.16267 1.86542 1.14711 1.83406 1.41879 1.23222 0.82779 0.99818 0.91509 1.18251 0.88392 0.93897 0.93274 1.21622 1.00592 0.96596 0.98836 1.21624 1.00586 0.96599 0.98836 1.21179 0.91219 1.52138 0.92595 0.93177 1.25523 1.00873 0.94426 0.96482 1.69940 1.21929 1.50148 1.11819 0.85701 0.78807 0.78608 0.79014 1.19969 1.20746 1.19987 1.21848 0.89125 0.92532 0.92678 1.20823 1.03624 1.05388 0.85905 0.90727 0.91756 0.91711 0.92644 0.91368 0.85539 0.87295 0.77965 0.93308 0.93278 0.94906 0.91818 0.96183 0.96202 0.91812 0.94924 0.92866 0.87902 0.89539 0.87335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.91 71.98 0.71 -0.12 16 2 C -0.14 -1.44 6.26 30.59 0.19 -1.25 16 3 C 0.12 1.35 6.03 86.38 0.52 1.87 16 4 N -0.35 -7.50 3.58 -332.95 -1.19 -8.69 16 5 N -0.32 -8.55 12.50 -56.25 -0.70 -9.26 16 6 C 0.10 2.99 11.87 85.67 1.02 4.01 16 7 C -0.31 -9.83 6.13 -20.16 -0.12 -9.95 16 8 C 0.53 20.41 7.95 70.20 0.56 20.97 16 9 O -0.55 -22.42 14.63 19.75 0.29 -22.13 16 10 O -0.35 -14.65 8.73 -56.68 -0.49 -15.14 16 11 C 0.10 4.61 4.27 71.98 0.31 4.92 16 12 C 0.06 3.13 0.58 -52.93 -0.03 3.10 16 13 C -0.12 -5.85 8.11 71.98 0.58 -5.27 16 14 C -0.12 -5.86 8.11 71.98 0.58 -5.27 16 15 C -0.53 -29.11 8.01 25.60 0.21 -28.90 16 16 H 0.05 2.72 7.74 -2.91 -0.02 2.70 16 17 C 0.03 1.45 5.15 84.65 0.44 1.89 16 18 N -0.90 -49.74 9.35 21.45 0.20 -49.54 16 19 Si 0.95 43.11 29.54 68.60 2.03 45.13 16 20 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 21 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 22 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 23 C 0.17 4.18 7.01 42.17 0.30 4.48 16 24 C -0.10 -1.75 9.34 71.24 0.67 -1.08 16 25 H 0.07 0.23 8.14 -2.39 -0.02 0.21 16 26 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 27 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 28 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.75 8.14 -2.39 -0.02 0.74 16 30 H 0.13 0.71 7.62 -2.39 -0.02 0.69 16 31 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.20 5.42 8.06 -2.91 -0.02 5.39 16 33 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 34 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 35 H 0.03 1.46 7.68 -2.39 -0.02 1.45 16 36 H 0.06 3.39 6.07 -2.39 -0.01 3.38 16 37 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 39 H 0.06 3.40 6.07 -2.39 -0.01 3.38 16 40 H 0.03 1.46 7.68 -2.39 -0.02 1.44 16 41 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 42 H 0.10 1.54 8.14 -2.39 -0.02 1.53 16 43 H 0.09 1.99 6.50 -2.39 -0.02 1.97 16 44 H 0.11 1.07 7.70 -2.39 -0.02 1.05 16 Total: -1.00 -66.13 361.34 7.02 -59.11 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.97 Total: 11.15 kcal Atomic # 6 Polarization: -16.54 SS G_CDS: 5.92 Total: -10.62 kcal Atomic # 7 Polarization: -65.80 SS G_CDS: -1.69 Total: -67.49 kcal Atomic # 8 Polarization: -37.07 SS G_CDS: -0.21 Total: -37.28 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.13 kcal Total: -66.13 7.02 -59.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001525295475.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.346 kcal (2) G-P(sol) polarization free energy of solvation -66.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds