Wall clock time and date at job start Tue Mar 31 2020 06:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47698 * 2 1 4 4 H 1.08998 * 109.47307 * 179.82624 * 3 2 1 5 5 C 1.50705 * 109.47242 * 299.82763 * 3 2 1 6 6 H 1.07998 * 119.99993 * 119.99397 * 5 3 2 7 7 C 1.37877 * 119.99917 * 299.99997 * 5 3 2 8 8 N 1.31520 * 119.99831 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00276 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46820 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47305 * 119.99774 * 9 7 5 12 12 H 1.48499 * 109.47449 * 239.99943 * 9 7 5 13 13 N 1.46907 * 109.46958 * 59.82418 * 3 2 1 14 14 C 1.46891 * 110.99723 * 85.93338 * 13 3 2 15 15 C 1.50704 * 109.47247 * 175.54316 * 14 13 3 16 16 C 1.34433 * 125.45431 * 94.97555 * 15 14 13 17 17 C 1.46742 * 106.37400 * 180.02562 * 16 15 14 18 18 C 1.47110 * 127.02629 * 179.97438 * 17 16 15 19 19 O 1.21551 * 119.99964 * 180.02562 * 18 17 16 20 20 O 1.34783 * 119.99818 * 0.02562 * 18 17 16 21 21 C 1.37849 * 105.95272 * 359.97438 * 17 16 15 22 22 C 1.50698 * 125.89834 * 180.02562 * 21 17 16 23 23 C 1.53000 * 109.46927 * 120.00076 * 22 21 17 24 24 C 1.53006 * 109.46901 * 239.99984 * 22 21 17 25 25 N 1.34631 * 108.20392 * 0.26364 * 21 17 16 26 26 H 0.96996 * 124.80714 * 179.71129 * 25 21 17 27 27 H 1.08998 * 109.47197 * 175.58647 * 1 2 3 28 28 H 1.08999 * 109.47053 * 295.59490 * 1 2 3 29 29 H 1.09004 * 109.46688 * 55.59084 * 1 2 3 30 30 H 1.09005 * 109.47021 * 239.99637 * 2 1 3 31 31 H 1.09003 * 109.47232 * 120.00371 * 2 1 3 32 32 H 0.96995 * 119.99759 * 179.97438 * 8 7 5 33 33 H 1.00896 * 110.99735 * 209.88644 * 13 3 2 34 34 H 1.09006 * 109.47606 * 55.54494 * 14 13 3 35 35 H 1.08998 * 109.47670 * 295.54566 * 14 13 3 36 36 H 1.07999 * 126.81293 * 0.02562 * 16 15 14 37 37 H 0.96699 * 116.99874 * 180.02562 * 20 18 17 38 38 H 1.09001 * 109.46775 * 359.97438 * 22 21 17 39 39 H 1.08997 * 109.46974 * 299.99252 * 23 22 21 40 40 H 1.09002 * 109.46566 * 180.02562 * 23 22 21 41 41 H 1.08994 * 109.47205 * 60.00587 * 23 22 21 42 42 H 1.08997 * 109.47166 * 300.00203 * 24 22 21 43 43 H 1.08994 * 109.46873 * 60.00294 * 24 22 21 44 44 H 1.08998 * 109.46591 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1301 1.4423 0.0031 5 6 1.5413 2.1517 -1.2326 6 1 0.9202 3.0299 -1.1362 7 6 1.8779 1.6793 -2.4835 8 7 2.6347 0.6101 -2.6009 9 14 1.2592 2.5579 -4.0113 10 1 0.4332 3.7253 -3.6107 11 1 2.4162 3.0241 -4.8170 12 1 0.4367 1.6235 -4.8209 13 7 1.5470 2.1362 1.1974 14 6 2.4393 1.9094 2.3420 15 6 1.9633 2.7218 3.5187 16 6 1.1633 2.2749 4.5023 17 6 0.9673 3.4026 5.4206 18 6 0.1662 3.4114 6.6544 19 8 0.0912 4.4237 7.3231 20 8 -0.4846 2.2970 7.0433 21 6 1.6873 4.4520 4.8910 22 6 1.7974 5.8346 5.4804 23 6 3.2644 6.1430 5.7867 24 6 1.2587 6.8597 4.4803 25 7 2.2708 4.0301 3.7534 26 1 2.8319 4.5781 3.1827 27 1 -0.3633 -1.0246 -0.0791 28 1 -0.3633 0.4440 0.9268 29 1 -0.3633 0.5808 -0.8479 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.8712 0.2776 -3.4808 33 1 1.4288 3.1225 1.0208 34 1 3.4528 2.2116 2.0781 35 1 2.4323 0.8515 2.6043 36 1 0.7473 1.2828 4.5977 37 1 -0.9984 2.3513 7.8607 38 1 1.2154 5.8846 6.4006 39 1 3.6481 5.4128 6.4991 40 1 3.3439 7.1429 6.2134 41 1 3.8460 6.0931 4.8662 42 1 1.8404 6.8097 3.5599 43 1 0.2137 6.6399 4.2622 44 1 1.3380 7.8596 4.9069 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001595030051.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:44 Heat of formation + Delta-G solvation = -71.663585 kcal Electronic energy + Delta-G solvation = -23868.604633 eV Core-core repulsion = 20399.603717 eV Total energy + Delta-G solvation = -3469.000916 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.40906 -39.51254 -36.51980 -35.94468 -35.17327 -32.79044 -31.12169 -30.88961 -28.84551 -27.35615 -26.37943 -24.33571 -24.12873 -23.10646 -21.00443 -20.46328 -19.56093 -19.08183 -17.88983 -16.92851 -16.04186 -15.61836 -15.51656 -14.99296 -14.81714 -14.47311 -14.21171 -14.09993 -13.52394 -13.44021 -13.09155 -12.91606 -12.83801 -12.41123 -12.31915 -12.20376 -11.72642 -11.55352 -11.45790 -11.36146 -11.26681 -11.03302 -10.98611 -10.76783 -10.44011 -10.24185 -10.14362 -9.76565 -9.41146 -8.84913 -8.80766 -8.53703 -8.01155 -7.33295 -6.08227 -4.14164 1.51647 2.49940 2.97118 3.23852 3.32792 3.35858 3.39122 3.52233 4.35158 4.48602 4.72764 4.96140 4.98500 5.22776 5.27202 5.30228 5.38747 5.47979 5.54764 5.59448 5.67271 5.76274 5.82196 5.95196 6.03412 6.05092 6.11857 6.38674 6.51935 6.63991 6.66612 6.82871 6.86393 7.09539 7.20791 7.24149 7.42903 7.47444 7.70326 7.72805 7.78284 8.10320 8.18906 8.29896 8.55911 8.94208 9.51084 10.97501 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018868 B = 0.003621 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.618877 B = 7731.771138 C = 8533.469983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C 0.215 3.785 4 H 0.001 0.999 5 C -0.514 4.514 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.283 1.283 13 N -0.678 5.678 14 C 0.125 3.875 15 C 0.029 3.971 16 C -0.127 4.127 17 C -0.236 4.236 18 C 0.563 3.437 19 O -0.539 6.539 20 O -0.511 6.511 21 C 0.128 3.872 22 C -0.051 4.051 23 C -0.145 4.145 24 C -0.146 4.146 25 N -0.535 5.535 26 H 0.416 0.584 27 H 0.014 0.986 28 H 0.043 0.957 29 H 0.055 0.945 30 H 0.087 0.913 31 H 0.011 0.989 32 H 0.261 0.739 33 H 0.329 0.671 34 H 0.027 0.973 35 H 0.089 0.911 36 H 0.150 0.850 37 H 0.407 0.593 38 H 0.121 0.879 39 H 0.059 0.941 40 H 0.064 0.936 41 H 0.051 0.949 42 H 0.052 0.948 43 H 0.061 0.939 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.263 7.145 15.823 17.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.141 4.141 3 C 0.108 3.892 4 H 0.019 0.981 5 C -0.552 4.552 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.721 3.279 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.209 1.209 13 N -0.309 5.309 14 C -0.005 4.005 15 C -0.080 4.080 16 C -0.151 4.151 17 C -0.244 4.244 18 C 0.410 3.590 19 O -0.431 6.431 20 O -0.322 6.322 21 C 0.007 3.993 22 C -0.070 4.070 23 C -0.202 4.202 24 C -0.204 4.204 25 N -0.130 5.130 26 H 0.253 0.747 27 H 0.033 0.967 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.029 0.971 32 H 0.071 0.929 33 H 0.146 0.854 34 H 0.045 0.955 35 H 0.107 0.893 36 H 0.167 0.833 37 H 0.264 0.736 38 H 0.139 0.861 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.312 6.761 15.524 16.936 hybrid contribution 0.352 1.129 -0.948 1.515 sum 0.040 7.890 14.577 16.575 Atomic orbital electron populations 1.21449 0.97404 0.97489 1.01410 1.21433 0.95148 0.98025 0.99530 1.19198 0.92934 0.91665 0.85425 0.98121 1.21195 1.31715 1.12034 0.90278 0.92303 1.24876 0.94980 0.94980 0.98925 1.69891 1.36563 1.22660 1.23482 0.86527 0.78582 0.79726 0.83095 1.19800 1.21157 1.20914 1.60804 1.48478 1.15794 1.05816 1.20522 0.93812 0.98273 0.87928 1.20495 1.03688 0.83939 0.99832 1.21774 1.00849 0.98588 0.93891 1.19212 1.10560 0.96167 0.98499 1.19871 0.75771 0.79714 0.83624 1.90781 1.62841 1.33729 1.55771 1.84633 1.61687 1.39714 1.46132 1.20386 0.95916 0.95214 0.87758 1.20232 0.98418 0.87648 1.00664 1.21843 0.94715 1.02070 1.01620 1.21849 1.01662 0.98438 0.98401 1.41526 1.40282 1.11248 1.19915 0.74728 0.96727 0.93806 0.92593 0.89501 0.97056 0.92946 0.85437 0.95477 0.89278 0.83253 0.73602 0.86131 0.92198 0.91693 0.93024 0.92922 0.91997 0.91725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.64 9.52 37.16 0.35 -2.29 16 2 C -0.10 -2.40 5.59 -26.74 -0.15 -2.55 16 3 C 0.21 5.06 2.30 -68.86 -0.16 4.90 16 4 H 0.00 0.03 7.71 -51.93 -0.40 -0.37 16 5 C -0.51 -13.24 7.26 -34.44 -0.25 -13.49 16 6 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 7 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -24.35 11.32 55.43 0.63 -23.73 16 9 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.17 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 13 N -0.68 -13.30 5.64 -109.22 -0.62 -13.92 16 14 C 0.12 2.05 6.06 -4.98 -0.03 2.02 16 15 C 0.03 0.43 6.58 -81.89 -0.54 -0.11 16 16 C -0.13 -1.90 10.89 -37.49 -0.41 -2.31 16 17 C -0.24 -3.42 6.33 -103.01 -0.65 -4.07 16 18 C 0.56 7.85 8.32 34.33 0.29 8.13 16 19 O -0.54 -8.15 15.32 -19.31 -0.30 -8.44 16 20 O -0.51 -5.80 13.33 -40.72 -0.54 -6.35 16 21 C 0.13 1.64 5.73 -81.51 -0.47 1.17 16 22 C -0.05 -0.55 3.25 -91.77 -0.30 -0.85 16 23 C -0.14 -1.30 9.18 37.16 0.34 -0.96 16 24 C -0.15 -1.40 9.18 37.16 0.34 -1.06 16 25 N -0.54 -6.69 5.89 -5.20 -0.03 -6.72 16 26 H 0.42 4.35 8.96 -40.82 -0.37 3.98 16 27 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.04 0.92 7.74 -51.93 -0.40 0.52 16 29 H 0.06 1.33 7.07 -51.93 -0.37 0.96 16 30 H 0.09 2.27 6.07 -51.93 -0.32 1.96 16 31 H 0.01 0.24 7.61 -51.93 -0.39 -0.16 16 32 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 33 H 0.33 6.40 8.13 -39.29 -0.32 6.08 16 34 H 0.03 0.44 7.94 -51.93 -0.41 0.03 16 35 H 0.09 1.48 7.61 -51.93 -0.40 1.09 16 36 H 0.15 2.16 8.06 -52.49 -0.42 1.73 16 37 H 0.41 2.55 9.11 45.56 0.42 2.97 16 38 H 0.12 1.49 5.56 -51.93 -0.29 1.21 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 362.32 15.07 5.46 5.46 Total: -1.00 -29.75 362.32 -8.31 -38.05 By element: Atomic # 1 Polarization: 16.06 SS G_CDS: -6.16 Total: 9.90 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -1.73 Total: -9.86 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: -0.02 Total: -44.36 kcal Atomic # 8 Polarization: -13.95 SS G_CDS: -0.84 Total: -14.79 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -29.75 -8.31 -38.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030051.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.611 kcal (2) G-P(sol) polarization free energy of solvation -29.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds