Wall clock time and date at job start Tue Mar 31 2020 06:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52994 * 109.47698 * 2 1 4 4 H 1.08998 * 109.47307 * 179.82624 * 3 2 1 5 5 C 1.50705 * 109.47242 * 299.82763 * 3 2 1 6 6 H 1.07998 * 119.99993 * 119.99397 * 5 3 2 7 7 C 1.37877 * 119.99917 * 299.99997 * 5 3 2 8 8 N 1.31520 * 119.99831 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00276 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46820 * 0.02562 * 9 7 5 11 11 H 1.48500 * 109.47305 * 119.99774 * 9 7 5 12 12 H 1.48499 * 109.47449 * 239.99943 * 9 7 5 13 13 N 1.46907 * 109.46958 * 59.82418 * 3 2 1 14 14 C 1.46891 * 110.99723 * 85.93338 * 13 3 2 15 15 C 1.50704 * 109.47247 * 175.54316 * 14 13 3 16 16 C 1.34433 * 125.45431 * 94.97555 * 15 14 13 17 17 C 1.46742 * 106.37400 * 180.02562 * 16 15 14 18 18 C 1.47110 * 127.02629 * 179.97438 * 17 16 15 19 19 O 1.21551 * 119.99964 * 180.02562 * 18 17 16 20 20 O 1.34783 * 119.99818 * 0.02562 * 18 17 16 21 21 C 1.37849 * 105.95272 * 359.97438 * 17 16 15 22 22 C 1.50698 * 125.89834 * 180.02562 * 21 17 16 23 23 C 1.53000 * 109.46927 * 120.00076 * 22 21 17 24 24 C 1.53006 * 109.46901 * 239.99984 * 22 21 17 25 25 N 1.34631 * 108.20392 * 0.26364 * 21 17 16 26 26 H 0.96996 * 124.80714 * 179.71129 * 25 21 17 27 27 H 1.08998 * 109.47197 * 175.58647 * 1 2 3 28 28 H 1.08999 * 109.47053 * 295.59490 * 1 2 3 29 29 H 1.09004 * 109.46688 * 55.59084 * 1 2 3 30 30 H 1.09005 * 109.47021 * 239.99637 * 2 1 3 31 31 H 1.09003 * 109.47232 * 120.00371 * 2 1 3 32 32 H 0.96995 * 119.99759 * 179.97438 * 8 7 5 33 33 H 1.00896 * 110.99735 * 209.88644 * 13 3 2 34 34 H 1.09006 * 109.47606 * 55.54494 * 14 13 3 35 35 H 1.08998 * 109.47670 * 295.54566 * 14 13 3 36 36 H 1.07999 * 126.81293 * 0.02562 * 16 15 14 37 37 H 0.96699 * 116.99874 * 180.02562 * 20 18 17 38 38 H 1.09001 * 109.46775 * 359.97438 * 22 21 17 39 39 H 1.08997 * 109.46974 * 299.99252 * 23 22 21 40 40 H 1.09002 * 109.46566 * 180.02562 * 23 22 21 41 41 H 1.08994 * 109.47205 * 60.00587 * 23 22 21 42 42 H 1.08997 * 109.47166 * 300.00203 * 24 22 21 43 43 H 1.08994 * 109.46873 * 60.00294 * 24 22 21 44 44 H 1.08998 * 109.46591 * 179.97438 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1301 1.4423 0.0031 5 6 1.5413 2.1517 -1.2326 6 1 0.9202 3.0299 -1.1362 7 6 1.8779 1.6793 -2.4835 8 7 2.6347 0.6101 -2.6009 9 14 1.2592 2.5579 -4.0113 10 1 0.4332 3.7253 -3.6107 11 1 2.4162 3.0241 -4.8170 12 1 0.4367 1.6235 -4.8209 13 7 1.5470 2.1362 1.1974 14 6 2.4393 1.9094 2.3420 15 6 1.9633 2.7218 3.5187 16 6 1.1633 2.2749 4.5023 17 6 0.9673 3.4026 5.4206 18 6 0.1662 3.4114 6.6544 19 8 0.0912 4.4237 7.3231 20 8 -0.4846 2.2970 7.0433 21 6 1.6873 4.4520 4.8910 22 6 1.7974 5.8346 5.4804 23 6 3.2644 6.1430 5.7867 24 6 1.2587 6.8597 4.4803 25 7 2.2708 4.0301 3.7534 26 1 2.8319 4.5781 3.1827 27 1 -0.3633 -1.0246 -0.0791 28 1 -0.3633 0.4440 0.9268 29 1 -0.3633 0.5808 -0.8479 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 2.8712 0.2776 -3.4808 33 1 1.4288 3.1225 1.0208 34 1 3.4528 2.2116 2.0781 35 1 2.4323 0.8515 2.6043 36 1 0.7473 1.2828 4.5977 37 1 -0.9984 2.3513 7.8607 38 1 1.2154 5.8846 6.4006 39 1 3.6481 5.4128 6.4991 40 1 3.3439 7.1429 6.2134 41 1 3.8460 6.0931 4.8662 42 1 1.8404 6.8097 3.5599 43 1 0.2137 6.6399 4.2622 44 1 1.3380 7.8596 4.9069 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001595030051.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:35:43 Heat of formation + Delta-G solvation = -90.533619 kcal Electronic energy + Delta-G solvation = -23869.422899 eV Core-core repulsion = 20399.603717 eV Total energy + Delta-G solvation = -3469.819182 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.47789 -40.54243 -38.13869 -36.99435 -36.14379 -34.52615 -32.70795 -32.16327 -30.22864 -28.09091 -28.07903 -25.72943 -25.28436 -24.86440 -21.97784 -21.58660 -20.91085 -20.59348 -18.94032 -18.51455 -17.40588 -16.90131 -16.63297 -16.53428 -15.97008 -15.64182 -15.57681 -15.33311 -14.87680 -14.82855 -14.32093 -14.16562 -13.95638 -13.78391 -13.70644 -13.18963 -13.09805 -13.01321 -12.83511 -12.59555 -12.44584 -12.40232 -12.20409 -12.13804 -11.97972 -11.93665 -11.57766 -11.28251 -11.22066 -10.77313 -10.52927 -9.90747 -9.20307 -8.92764 -8.08999 -6.20740 0.47607 1.34102 1.40692 1.44841 1.53993 1.98734 2.30461 2.43352 2.55383 3.20315 3.56190 3.74112 3.90146 3.93997 4.17598 4.26465 4.46637 4.50892 4.54019 4.65380 4.71074 4.76414 4.81414 4.84552 4.87023 4.89776 4.98720 5.12221 5.15112 5.30763 5.33447 5.40978 5.43727 5.58340 5.72429 5.72904 5.75604 5.83881 5.91541 5.98812 6.30843 6.43527 6.50597 6.78402 7.02065 7.18502 7.48113 8.95822 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.018868 B = 0.003621 C = 0.003280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.618877 B = 7731.771138 C = 8533.469983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.100 4.100 3 C 0.222 3.778 4 H -0.028 1.028 5 C -0.521 4.521 6 H 0.056 0.944 7 C 0.020 3.980 8 N -0.915 5.915 9 Si 0.951 3.049 10 H -0.268 1.268 11 H -0.283 1.283 12 H -0.284 1.284 13 N -0.674 5.674 14 C 0.132 3.868 15 C 0.021 3.979 16 C -0.133 4.133 17 C -0.263 4.263 18 C 0.563 3.437 19 O -0.556 6.556 20 O -0.510 6.510 21 C 0.140 3.860 22 C -0.049 4.049 23 C -0.142 4.142 24 C -0.144 4.144 25 N -0.526 5.526 26 H 0.426 0.574 27 H 0.031 0.969 28 H 0.051 0.949 29 H 0.034 0.966 30 H 0.058 0.942 31 H 0.024 0.976 32 H 0.260 0.740 33 H 0.330 0.670 34 H 0.030 0.970 35 H 0.087 0.913 36 H 0.150 0.850 37 H 0.428 0.572 38 H 0.107 0.893 39 H 0.051 0.949 40 H 0.082 0.918 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.047 0.953 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.543 8.334 16.437 18.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.139 4.139 3 C 0.114 3.886 4 H -0.010 1.010 5 C -0.560 4.560 6 H 0.074 0.926 7 C -0.180 4.180 8 N -0.554 5.554 9 Si 0.777 3.223 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.210 1.210 13 N -0.305 5.305 14 C 0.002 3.998 15 C -0.088 4.088 16 C -0.156 4.156 17 C -0.271 4.271 18 C 0.411 3.589 19 O -0.450 6.450 20 O -0.323 6.323 21 C 0.019 3.981 22 C -0.068 4.068 23 C -0.199 4.199 24 C -0.201 4.201 25 N -0.121 5.121 26 H 0.265 0.735 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.070 0.930 33 H 0.147 0.853 34 H 0.048 0.952 35 H 0.105 0.895 36 H 0.168 0.832 37 H 0.289 0.711 38 H 0.124 0.876 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.600 7.951 16.158 18.018 hybrid contribution 0.430 0.746 -1.044 1.353 sum -0.170 8.697 15.114 17.439 Atomic orbital electron populations 1.21311 0.96190 0.98250 1.00792 1.21327 0.96111 0.97720 0.98721 1.18966 0.91087 0.92118 0.86454 1.01043 1.21451 1.31285 1.11933 0.91321 0.92619 1.25560 0.95247 0.95610 1.01543 1.70014 1.37626 1.23836 1.23931 0.85619 0.78030 0.78745 0.79902 1.19237 1.20894 1.21006 1.60696 1.49091 1.15586 1.05147 1.20396 0.93397 0.98650 0.87309 1.20117 1.04535 0.84776 0.99342 1.21884 1.00721 0.98925 0.94117 1.19463 1.11813 0.96586 0.99252 1.19815 0.75726 0.79921 0.83389 1.90773 1.63594 1.34374 1.56268 1.84584 1.61605 1.38577 1.47522 1.20770 0.94391 0.95822 0.87154 1.20267 0.99640 0.86690 1.00169 1.21831 0.93189 1.02856 1.02032 1.21844 1.00793 0.98966 0.98501 1.41452 1.40114 1.10619 1.19941 0.73494 0.95036 0.92946 0.94734 0.92397 0.95720 0.93043 0.85290 0.95176 0.89469 0.83195 0.71132 0.87554 0.92940 0.89950 0.92067 0.92141 0.93358 0.89872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.67 9.52 71.98 0.69 -3.98 16 2 C -0.10 -4.68 5.59 30.59 0.17 -4.51 16 3 C 0.22 10.49 2.30 44.17 0.10 10.59 16 4 H -0.03 -1.46 7.71 -2.39 -0.02 -1.48 16 5 C -0.52 -26.89 7.26 25.60 0.19 -26.70 16 6 H 0.06 2.85 7.60 -2.91 -0.02 2.83 16 7 C 0.02 1.05 5.30 84.65 0.45 1.50 16 8 N -0.91 -50.75 11.32 21.45 0.24 -50.51 16 9 Si 0.95 42.19 29.54 68.60 2.03 44.22 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 13 N -0.67 -26.10 5.64 -499.46 -2.82 -28.91 16 14 C 0.13 4.26 6.06 85.56 0.52 4.78 16 15 C 0.02 0.60 6.58 40.97 0.27 0.87 16 16 C -0.13 -3.85 10.89 23.62 0.26 -3.59 16 17 C -0.26 -7.39 6.33 -18.82 -0.12 -7.51 16 18 C 0.56 15.21 8.32 70.15 0.58 15.80 16 19 O -0.56 -16.38 15.32 19.67 0.30 -16.08 16 20 O -0.51 -10.93 13.33 -56.95 -0.76 -11.69 16 21 C 0.14 3.42 5.73 42.04 0.24 3.66 16 22 C -0.05 -0.97 3.25 -11.54 -0.04 -1.01 16 23 C -0.14 -2.22 9.18 71.98 0.66 -1.56 16 24 C -0.14 -2.47 9.18 71.98 0.66 -1.81 16 25 N -0.53 -12.40 5.89 -170.36 -1.00 -13.40 16 26 H 0.43 8.15 8.96 -92.71 -0.83 7.32 16 27 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 28 H 0.05 2.14 7.74 -2.39 -0.02 2.12 16 29 H 0.03 1.61 7.07 -2.39 -0.02 1.59 16 30 H 0.06 3.06 6.07 -2.38 -0.01 3.05 16 31 H 0.02 1.05 7.61 -2.39 -0.02 1.03 16 32 H 0.26 13.83 8.31 -92.71 -0.77 13.06 16 33 H 0.33 12.60 8.13 -89.70 -0.73 11.87 16 34 H 0.03 0.96 7.94 -2.38 -0.02 0.95 16 35 H 0.09 2.85 7.61 -2.39 -0.02 2.83 16 36 H 0.15 4.22 8.06 -2.91 -0.02 4.20 16 37 H 0.43 4.70 9.11 -74.06 -0.67 4.02 16 38 H 0.11 2.51 5.56 -2.39 -0.01 2.50 16 39 H 0.05 0.90 8.14 -2.39 -0.02 0.89 16 40 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 42 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -62.86 362.32 1.42 -61.45 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: -1.20 Total: 28.38 kcal Atomic # 6 Polarization: -18.09 SS G_CDS: 4.63 Total: -13.46 kcal Atomic # 7 Polarization: -89.24 SS G_CDS: -3.58 Total: -92.82 kcal Atomic # 8 Polarization: -27.31 SS G_CDS: -0.46 Total: -27.77 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 2.03 Total: 44.22 kcal Total: -62.86 1.42 -61.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001595030051.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.087 kcal (2) G-P(sol) polarization free energy of solvation -62.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds