Wall clock time and date at job start Tue Mar 31 2020 08:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42895 * 109.47281 * 95.23490 * 3 2 1 5 5 C 1.42895 * 114.00203 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47194 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47348 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99503 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00081 * 179.72561 * 7 6 5 10 10 C 1.46506 * 119.99968 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46710 * 275.00042 * 10 9 7 12 12 C 1.53004 * 109.46947 * 299.99611 * 11 10 9 13 13 C 1.52998 * 109.47106 * 300.00354 * 12 11 10 14 14 N 1.46506 * 109.47209 * 179.97438 * 13 12 11 15 15 C 1.36935 * 119.99383 * 84.99952 * 14 13 12 16 16 H 1.07994 * 120.00749 * 0.02562 * 15 14 13 17 17 C 1.38819 * 119.99528 * 179.97438 * 15 14 13 18 18 N 1.31622 * 119.99953 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99954 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47079 * 90.00396 * 19 17 15 21 21 H 1.48500 * 109.46997 * 210.00623 * 19 17 15 22 22 H 1.48503 * 109.47279 * 330.00035 * 19 17 15 23 23 C 1.53003 * 109.47003 * 60.00133 * 13 12 11 24 24 C 1.52995 * 109.47011 * 154.99680 * 10 9 7 25 25 H 4.38452 * 5.44445 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.47122 * 335.23127 * 3 2 1 27 27 H 1.09004 * 109.46933 * 215.23231 * 3 2 1 28 28 H 1.09000 * 109.47468 * 59.99846 * 5 4 3 29 29 H 1.09002 * 109.46794 * 299.99455 * 5 4 3 30 30 H 1.09001 * 109.47671 * 59.99913 * 6 5 4 31 31 H 1.08998 * 109.47454 * 299.99911 * 6 5 4 32 32 H 0.96998 * 120.00525 * 359.97438 * 9 7 6 33 33 H 1.08995 * 109.47035 * 34.99295 * 10 9 7 34 34 H 1.08996 * 109.47804 * 59.99502 * 11 10 9 35 35 H 1.09002 * 109.46963 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.47198 * 180.02562 * 12 11 10 37 37 H 1.09002 * 109.46977 * 60.00390 * 12 11 10 38 38 H 1.09002 * 109.47232 * 299.99881 * 13 12 11 39 39 H 0.96998 * 119.99832 * 265.00239 * 14 13 12 40 40 H 0.97003 * 119.99643 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.47186 * 179.97438 * 23 13 12 42 42 H 1.08992 * 109.47335 * 59.99801 * 23 13 12 43 43 H 1.09002 * 109.46878 * 179.97438 * 24 10 9 44 44 H 1.08998 * 109.47477 * 299.99585 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1223 0.1238 -1.3416 5 6 4.5468 0.1353 -1.4539 6 6 4.9412 0.2697 -2.9261 7 6 6.4436 0.2824 -3.0445 8 8 7.1310 0.1934 -2.0493 9 7 7.0231 0.3878 -4.2567 10 6 8.4836 0.3997 -4.3718 11 6 8.9999 1.8247 -4.1635 12 6 8.3971 2.7460 -5.2260 13 6 8.8031 2.2546 -6.6169 14 7 8.2253 3.1364 -7.6342 15 6 8.8770 4.2858 -7.9939 16 1 9.8169 4.5421 -7.5280 17 6 8.3298 5.1210 -8.9583 18 7 7.1845 4.8084 -9.5265 19 14 9.2191 6.6886 -9.4495 20 1 10.1413 6.4018 -10.5775 21 1 8.2263 7.7101 -9.8692 22 1 9.9965 7.2002 -8.2923 23 6 8.2866 0.8295 -6.8251 24 6 8.8895 -0.0917 -5.7627 25 1 -1.0501 0.0002 0.0001 26 1 3.0098 -0.9323 0.4306 27 1 3.0089 0.8403 0.5929 28 1 4.9504 -0.7946 -1.0534 29 1 4.9487 0.9780 -0.8914 30 1 4.5377 1.1994 -3.3270 31 1 4.5393 -0.5732 -3.4883 32 1 6.4733 0.4550 -5.0530 33 1 8.9130 -0.2566 -3.6149 34 1 8.7107 2.1749 -3.1727 35 1 10.0866 1.8335 -4.2487 36 1 8.7653 3.7612 -5.0779 37 1 7.3105 2.7372 -5.1403 38 1 9.8897 2.2635 -6.7025 39 1 7.3812 2.9060 -8.0529 40 1 6.8020 5.3923 -10.2001 41 1 8.5754 0.4796 -7.8162 42 1 7.2001 0.8207 -6.7394 43 1 9.9761 -0.0825 -5.8485 44 1 8.5216 -1.1070 -5.9111 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690532849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:07 Heat of formation + Delta-G solvation = -32.684601 kcal Electronic energy + Delta-G solvation = -23199.284328 eV Core-core repulsion = 19731.973667 eV Total energy + Delta-G solvation = -3467.310661 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.20837 -38.54717 -37.81496 -34.67559 -33.77123 -32.83995 -31.72892 -30.52580 -30.44181 -27.77347 -27.12735 -24.15878 -23.47918 -22.23632 -21.03984 -20.66728 -18.88777 -18.79123 -17.62699 -17.10776 -16.69003 -16.25157 -15.75089 -15.46226 -15.18746 -15.03109 -14.35705 -13.99122 -13.72943 -13.49718 -13.35539 -13.08826 -12.90988 -12.39107 -12.23182 -11.93158 -11.86356 -11.72239 -11.61782 -11.02506 -10.88177 -10.86785 -10.82144 -10.75995 -10.41779 -10.19008 -10.13993 -9.87613 -9.86749 -9.71906 -9.58129 -8.96447 -8.83299 -6.95899 -5.77574 -3.05831 2.13301 2.46838 2.61640 3.08621 3.42709 3.48236 3.49595 3.71385 4.24052 4.57657 4.59088 4.80123 4.87389 4.91997 5.04249 5.06330 5.07103 5.12102 5.29709 5.49447 5.53340 5.55432 5.58713 5.60878 5.68589 5.74229 5.86058 5.91761 6.00287 6.07630 6.25397 6.34452 6.49147 6.50660 6.64202 6.74296 6.79267 6.97252 7.12309 7.22472 7.52636 7.69880 8.20978 8.41471 9.52497 10.10633 10.44960 11.45184 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016536 B = 0.002803 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.841142 B = 9985.167648 C =11074.681341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.193 4.193 3 C 0.174 3.826 4 O -0.386 6.386 5 C 0.080 3.920 6 C -0.143 4.143 7 C 0.519 3.481 8 O -0.550 6.550 9 N -0.715 5.715 10 C 0.148 3.852 11 C -0.128 4.128 12 C -0.132 4.132 13 C 0.177 3.823 14 N -0.725 5.725 15 C -0.236 4.236 16 H 0.070 0.930 17 C -0.015 4.015 18 N -0.934 5.934 19 Si 0.905 3.095 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.125 4.125 24 C -0.122 4.122 25 H 0.222 0.778 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.403 0.597 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.067 0.933 36 H 0.060 0.940 37 H 0.053 0.947 38 H 0.046 0.954 39 H 0.382 0.618 40 H 0.255 0.745 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.078 0.922 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.280 -13.312 16.083 21.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.193 4.193 3 C 0.098 3.902 4 O -0.306 6.306 5 C 0.003 3.997 6 C -0.183 4.183 7 C 0.306 3.694 8 O -0.428 6.428 9 N -0.367 5.367 10 C 0.044 3.956 11 C -0.168 4.168 12 C -0.172 4.172 13 C 0.067 3.933 14 N -0.366 5.366 15 C -0.368 4.368 16 H 0.088 0.912 17 C -0.211 4.211 18 N -0.583 5.583 19 Si 0.737 3.263 20 H -0.218 1.218 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.163 4.163 24 C -0.161 4.161 25 H 0.239 0.761 26 H 0.093 0.907 27 H 0.094 0.906 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.123 0.877 31 H 0.120 0.880 32 H 0.239 0.761 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.216 0.784 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.763 -13.204 16.576 21.962 hybrid contribution -0.199 0.984 -0.679 1.212 sum -5.962 -12.220 15.897 20.919 Atomic orbital electron populations 1.24989 0.95907 1.00849 0.97565 1.22577 0.93935 1.00635 1.02131 1.19044 0.84615 1.01598 0.84909 1.87880 1.21830 1.95101 1.25758 1.22151 0.79624 1.01962 0.95969 1.21484 0.92924 1.05984 0.97884 1.20289 0.89827 0.75832 0.83500 1.90691 1.65369 1.50247 1.36522 1.46128 1.08161 1.73843 1.08552 1.20983 0.79379 0.97573 0.97693 1.21927 1.00472 0.94725 0.99635 1.22216 1.00249 0.98797 0.95986 1.20232 0.96530 0.88199 0.88305 1.42425 1.25963 1.23647 1.44533 1.19238 1.02974 0.97870 1.16678 0.91249 1.24735 0.97417 0.99243 0.99674 1.69657 1.19116 1.38839 1.30639 0.86213 0.78515 0.83283 0.78336 1.21764 1.21813 1.20806 1.21817 0.99905 0.96260 0.98352 1.21797 1.01825 0.98897 0.93560 0.76141 0.90694 0.90616 0.92100 0.91963 0.87708 0.87992 0.76082 0.89964 0.92327 0.91437 0.92169 0.92822 0.93564 0.78405 0.93560 0.91460 0.92610 0.90382 0.91801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.45 19.25 29.55 0.57 -0.88 16 2 C -0.19 -1.90 13.73 -37.12 -0.51 -2.41 16 3 C 0.17 1.52 6.41 34.37 0.22 1.74 16 4 O -0.39 -4.21 10.30 -35.23 -0.36 -4.57 16 5 C 0.08 0.80 5.23 37.16 0.19 1.00 16 6 C -0.14 -1.41 6.07 -27.88 -0.17 -1.58 16 7 C 0.52 6.43 7.79 -10.98 -0.09 6.35 16 8 O -0.55 -8.51 15.64 5.56 0.09 -8.42 16 9 N -0.71 -8.41 4.23 -53.80 -0.23 -8.64 16 10 C 0.15 1.85 2.79 -67.93 -0.19 1.66 16 11 C -0.13 -1.84 5.60 -26.73 -0.15 -1.99 16 12 C -0.13 -2.29 5.34 -26.73 -0.14 -2.43 16 13 C 0.18 3.31 2.77 -67.93 -0.19 3.12 16 14 N -0.73 -17.55 5.12 -53.42 -0.27 -17.83 16 15 C -0.24 -6.45 9.93 -15.06 -0.15 -6.60 16 16 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 17 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 18 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 19 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 20 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C -0.12 -1.84 5.22 -26.73 -0.14 -1.98 16 24 C -0.12 -1.44 5.61 -26.74 -0.15 -1.59 16 25 H 0.22 0.98 7.80 -54.09 -0.42 0.56 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.59 8.10 -51.93 -0.42 0.17 16 29 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 30 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 31 H 0.10 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.40 4.29 6.87 -40.82 -0.28 4.01 16 33 H 0.08 1.06 7.57 -51.93 -0.39 0.67 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 37 H 0.05 0.95 7.60 -51.93 -0.39 0.55 16 38 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 39 H 0.38 9.82 7.80 -40.82 -0.32 9.50 16 40 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.06 0.78 6.50 -51.93 -0.34 0.45 16 43 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 366.46 15.07 5.52 5.52 Total: -1.00 -32.84 366.46 -7.72 -40.56 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -7.18 Total: 9.37 kcal Atomic # 6 Polarization: -5.11 SS G_CDS: -0.99 Total: -6.10 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: 0.22 Total: -53.64 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: -0.28 Total: -12.99 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.84 -7.72 -40.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690532849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.871 kcal (2) G-P(sol) polarization free energy of solvation -32.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.556 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds