Wall clock time and date at job start Tue Mar 31 2020 08:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 O 1.42895 * 109.47281 * 95.23490 * 3 2 1 5 5 C 1.42895 * 114.00203 * 179.97438 * 4 3 2 6 6 C 1.52998 * 109.47194 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.47348 * 179.97438 * 6 5 4 8 8 O 1.21283 * 119.99503 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00081 * 179.72561 * 7 6 5 10 10 C 1.46506 * 119.99968 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.46710 * 275.00042 * 10 9 7 12 12 C 1.53004 * 109.46947 * 299.99611 * 11 10 9 13 13 C 1.52998 * 109.47106 * 300.00354 * 12 11 10 14 14 N 1.46506 * 109.47209 * 179.97438 * 13 12 11 15 15 C 1.36935 * 119.99383 * 84.99952 * 14 13 12 16 16 H 1.07994 * 120.00749 * 0.02562 * 15 14 13 17 17 C 1.38819 * 119.99528 * 179.97438 * 15 14 13 18 18 N 1.31622 * 119.99953 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99954 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47079 * 90.00396 * 19 17 15 21 21 H 1.48500 * 109.46997 * 210.00623 * 19 17 15 22 22 H 1.48503 * 109.47279 * 330.00035 * 19 17 15 23 23 C 1.53003 * 109.47003 * 60.00133 * 13 12 11 24 24 C 1.52995 * 109.47011 * 154.99680 * 10 9 7 25 25 H 4.38452 * 5.44445 * 180.02562 * 4 1 2 26 26 H 1.09001 * 109.47122 * 335.23127 * 3 2 1 27 27 H 1.09004 * 109.46933 * 215.23231 * 3 2 1 28 28 H 1.09000 * 109.47468 * 59.99846 * 5 4 3 29 29 H 1.09002 * 109.46794 * 299.99455 * 5 4 3 30 30 H 1.09001 * 109.47671 * 59.99913 * 6 5 4 31 31 H 1.08998 * 109.47454 * 299.99911 * 6 5 4 32 32 H 0.96998 * 120.00525 * 359.97438 * 9 7 6 33 33 H 1.08995 * 109.47035 * 34.99295 * 10 9 7 34 34 H 1.08996 * 109.47804 * 59.99502 * 11 10 9 35 35 H 1.09002 * 109.46963 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.47198 * 180.02562 * 12 11 10 37 37 H 1.09002 * 109.46977 * 60.00390 * 12 11 10 38 38 H 1.09002 * 109.47232 * 299.99881 * 13 12 11 39 39 H 0.96998 * 119.99832 * 265.00239 * 14 13 12 40 40 H 0.97003 * 119.99643 * 179.97438 * 18 17 15 41 41 H 1.09005 * 109.47186 * 179.97438 * 23 13 12 42 42 H 1.08992 * 109.47335 * 59.99801 * 23 13 12 43 43 H 1.09002 * 109.46878 * 179.97438 * 24 10 9 44 44 H 1.08998 * 109.47477 * 299.99585 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1223 0.1238 -1.3416 5 6 4.5468 0.1353 -1.4539 6 6 4.9412 0.2697 -2.9261 7 6 6.4436 0.2824 -3.0445 8 8 7.1310 0.1934 -2.0493 9 7 7.0231 0.3878 -4.2567 10 6 8.4836 0.3997 -4.3718 11 6 8.9999 1.8247 -4.1635 12 6 8.3971 2.7460 -5.2260 13 6 8.8031 2.2546 -6.6169 14 7 8.2253 3.1364 -7.6342 15 6 8.8770 4.2858 -7.9939 16 1 9.8169 4.5421 -7.5280 17 6 8.3298 5.1210 -8.9583 18 7 7.1845 4.8084 -9.5265 19 14 9.2191 6.6886 -9.4495 20 1 10.1413 6.4018 -10.5775 21 1 8.2263 7.7101 -9.8692 22 1 9.9965 7.2002 -8.2923 23 6 8.2866 0.8295 -6.8251 24 6 8.8895 -0.0917 -5.7627 25 1 -1.0501 0.0002 0.0001 26 1 3.0098 -0.9323 0.4306 27 1 3.0089 0.8403 0.5929 28 1 4.9504 -0.7946 -1.0534 29 1 4.9487 0.9780 -0.8914 30 1 4.5377 1.1994 -3.3270 31 1 4.5393 -0.5732 -3.4883 32 1 6.4733 0.4550 -5.0530 33 1 8.9130 -0.2566 -3.6149 34 1 8.7107 2.1749 -3.1727 35 1 10.0866 1.8335 -4.2487 36 1 8.7653 3.7612 -5.0779 37 1 7.3105 2.7372 -5.1403 38 1 9.8897 2.2635 -6.7025 39 1 7.3812 2.9060 -8.0529 40 1 6.8020 5.3923 -10.2001 41 1 8.5754 0.4796 -7.8162 42 1 7.2001 0.8207 -6.7394 43 1 9.9761 -0.0825 -5.8485 44 1 8.5216 -1.1070 -5.9111 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690532849.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:51:06 Heat of formation + Delta-G solvation = -54.259039 kcal Electronic energy + Delta-G solvation = -23200.219865 eV Core-core repulsion = 19731.973667 eV Total energy + Delta-G solvation = -3468.246199 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.25765 -39.51833 -38.83742 -36.27005 -34.46887 -34.28152 -32.87738 -31.92541 -31.67402 -29.21208 -27.90201 -25.70467 -24.72660 -23.46573 -22.39690 -21.68656 -20.16162 -19.44111 -19.05433 -18.46834 -17.45900 -17.16382 -16.89130 -16.76555 -16.33455 -15.89051 -15.79837 -15.29385 -15.06400 -15.03695 -14.48184 -14.20660 -13.87590 -13.72993 -13.46669 -13.07601 -13.06535 -12.84897 -12.78806 -12.65540 -12.46543 -12.15629 -12.00909 -11.99380 -11.68330 -11.55133 -11.45722 -11.29480 -11.08628 -10.90635 -10.80928 -10.57549 -9.97240 -8.96636 -7.93153 -5.19965 1.44323 1.46984 1.47677 1.55886 1.64527 1.81418 2.21185 2.56767 3.00471 3.40085 3.60111 3.73073 3.78675 3.89420 3.92589 4.05381 4.20646 4.30301 4.34226 4.37116 4.41396 4.44097 4.52452 4.62943 4.68189 4.70147 4.79777 4.84077 4.87391 5.02411 5.04592 5.13137 5.18827 5.28299 5.33072 5.50025 5.58782 5.62360 5.67573 6.07237 6.30486 6.57640 6.59018 7.25306 7.36321 8.14816 8.36820 9.30239 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016536 B = 0.002803 C = 0.002528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1692.841142 B = 9985.167648 C =11074.681341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.240 4.240 3 C 0.167 3.833 4 O -0.403 6.403 5 C 0.082 3.918 6 C -0.137 4.137 7 C 0.520 3.480 8 O -0.582 6.582 9 N -0.711 5.711 10 C 0.152 3.848 11 C -0.120 4.120 12 C -0.120 4.120 13 C 0.172 3.828 14 N -0.737 5.737 15 C -0.234 4.234 16 H 0.071 0.929 17 C -0.077 4.077 18 N -0.969 5.969 19 Si 0.967 3.033 20 H -0.287 1.287 21 H -0.297 1.297 22 H -0.273 1.273 23 C -0.116 4.116 24 C -0.110 4.110 25 H 0.253 0.747 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.108 0.892 31 H 0.122 0.878 32 H 0.410 0.590 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.077 0.923 36 H 0.030 0.970 37 H 0.048 0.952 38 H 0.039 0.961 39 H 0.373 0.627 40 H 0.250 0.750 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.088 0.912 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.297 -14.528 16.752 23.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.240 4.240 3 C 0.092 3.908 4 O -0.323 6.323 5 C 0.006 3.994 6 C -0.177 4.177 7 C 0.307 3.693 8 O -0.462 6.462 9 N -0.363 5.363 10 C 0.047 3.953 11 C -0.159 4.159 12 C -0.160 4.160 13 C 0.063 3.937 14 N -0.376 5.376 15 C -0.366 4.366 16 H 0.089 0.911 17 C -0.269 4.269 18 N -0.620 5.620 19 Si 0.796 3.204 20 H -0.214 1.214 21 H -0.224 1.224 22 H -0.198 1.198 23 C -0.154 4.154 24 C -0.148 4.148 25 H 0.270 0.730 26 H 0.108 0.892 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.073 0.927 30 H 0.127 0.873 31 H 0.140 0.860 32 H 0.247 0.753 33 H 0.106 0.894 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.057 0.943 39 H 0.205 0.795 40 H 0.058 0.942 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.106 0.894 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.757 -14.443 17.271 23.239 hybrid contribution -0.216 1.335 -0.817 1.580 sum -5.973 -13.109 16.454 21.869 Atomic orbital electron populations 1.25874 0.96845 0.99346 0.95856 1.23121 0.94929 1.02161 1.03754 1.19241 0.84538 1.02849 0.84170 1.87838 1.22024 1.95243 1.27186 1.22103 0.79451 1.01853 0.96016 1.21461 0.91069 1.06997 0.98172 1.20658 0.90683 0.74881 0.83036 1.90678 1.66272 1.51768 1.37530 1.46115 1.08007 1.73376 1.08791 1.20925 0.79819 0.96120 0.98403 1.21841 1.00982 0.95272 0.97776 1.21997 0.99903 0.97898 0.96196 1.20482 0.95986 0.89763 0.87421 1.42634 1.25614 1.23730 1.45663 1.19580 1.02766 0.98584 1.15711 0.91104 1.25481 0.98465 1.02435 1.00523 1.69799 1.20681 1.39931 1.31566 0.85235 0.77308 0.79723 0.78106 1.21430 1.22361 1.19809 1.21698 1.00476 0.93973 0.99278 1.21732 1.02358 0.99220 0.91482 0.73046 0.89165 0.89664 0.91764 0.92672 0.87345 0.86026 0.75288 0.89435 0.93205 0.90419 0.95103 0.93364 0.94277 0.79541 0.94152 0.91987 0.91872 0.89363 0.89176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 19.25 74.32 1.43 -1.01 16 2 C -0.24 -4.54 13.73 31.12 0.43 -4.11 16 3 C 0.17 2.84 6.41 70.18 0.45 3.29 16 4 O -0.40 -8.50 10.30 -148.98 -1.53 -10.04 16 5 C 0.08 1.59 5.23 71.98 0.38 1.97 16 6 C -0.14 -2.51 6.07 29.85 0.18 -2.33 16 7 C 0.52 12.10 7.79 87.66 0.68 12.79 16 8 O -0.58 -17.36 15.64 -3.04 -0.05 -17.41 16 9 N -0.71 -15.31 4.23 -442.53 -1.87 -17.19 16 10 C 0.15 3.45 2.79 44.99 0.13 3.58 16 11 C -0.12 -3.27 5.60 30.60 0.17 -3.10 16 12 C -0.12 -4.11 5.34 30.60 0.16 -3.94 16 13 C 0.17 6.30 2.77 44.99 0.12 6.43 16 14 N -0.74 -35.87 5.12 -322.92 -1.65 -37.53 16 15 C -0.23 -12.86 9.93 84.04 0.83 -12.03 16 16 H 0.07 3.79 7.83 -2.91 -0.02 3.77 16 17 C -0.08 -4.39 5.50 84.86 0.47 -3.93 16 18 N -0.97 -58.73 13.06 21.65 0.28 -58.44 16 19 Si 0.97 46.20 29.55 68.60 2.03 48.23 16 20 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 21 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 23 C -0.12 -3.20 5.22 30.59 0.16 -3.04 16 24 C -0.11 -2.24 5.61 30.59 0.17 -2.07 16 25 H 0.25 1.59 7.80 -4.41 -0.03 1.56 16 26 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 28 H 0.06 1.18 8.10 -2.39 -0.02 1.16 16 29 H 0.05 1.12 8.10 -2.39 -0.02 1.10 16 30 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.41 7.82 6.87 -92.71 -0.64 7.19 16 33 H 0.09 2.02 7.57 -2.39 -0.02 2.00 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.05 1.69 7.60 -2.39 -0.02 1.67 16 38 H 0.04 1.50 8.08 -2.39 -0.02 1.48 16 39 H 0.37 19.37 7.80 -92.71 -0.72 18.65 16 40 H 0.25 14.75 8.31 -92.71 -0.77 13.97 16 41 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 42 H 0.06 1.65 6.50 -2.39 -0.02 1.64 16 43 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 Total: -1.00 -70.92 366.46 2.60 -68.32 By element: Atomic # 1 Polarization: 31.93 SS G_CDS: -0.37 Total: 31.56 kcal Atomic # 6 Polarization: -13.27 SS G_CDS: 5.77 Total: -7.50 kcal Atomic # 7 Polarization: -109.92 SS G_CDS: -3.24 Total: -113.16 kcal Atomic # 8 Polarization: -25.86 SS G_CDS: -1.58 Total: -27.44 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -70.92 2.60 -68.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690532849.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.060 kcal (2) G-P(sol) polarization free energy of solvation -70.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds