Wall clock time and date at job start Tue Mar 31 2020 06:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46781 * 2 1 4 4 N 1.46500 * 109.47106 * 119.99604 * 2 1 3 5 5 C 1.36936 * 119.99830 * 294.90622 * 4 2 1 6 6 H 1.08002 * 120.00040 * 37.14769 * 5 4 2 7 7 C 1.38813 * 119.99678 * 217.14184 * 5 4 2 8 8 N 1.31611 * 120.00382 * 21.27020 * 7 5 4 9 9 Si 1.86803 * 119.99830 * 201.26484 * 7 5 4 10 10 H 1.48507 * 109.47231 * 60.00450 * 9 7 5 11 11 H 1.48504 * 109.46966 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47524 * 300.00338 * 9 7 5 13 13 C 1.46498 * 120.00081 * 114.90085 * 4 2 1 14 14 C 1.53001 * 109.47554 * 270.00505 * 13 4 2 15 15 C 1.52998 * 109.47043 * 180.02562 * 14 13 4 16 16 N 1.46507 * 109.46728 * 180.02562 * 15 14 13 17 17 C 1.34781 * 119.99716 * 179.97438 * 16 15 14 18 18 O 1.21280 * 119.99675 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99886 * 179.97438 * 17 16 15 20 20 C 1.50697 * 109.47178 * 180.02562 * 19 17 16 21 21 C 1.41386 * 126.57980 * 89.99840 * 20 19 17 22 22 C 1.34515 * 106.83861 * 180.26298 * 21 20 19 23 23 O 1.34302 * 108.42126 * 359.63656 * 22 21 20 24 24 C 1.34304 * 109.47637 * 0.37224 * 23 22 21 25 25 H 1.08992 * 109.47241 * 303.31149 * 1 2 3 26 26 H 1.09006 * 109.46637 * 63.31618 * 1 2 3 27 27 H 1.09000 * 109.46878 * 183.30866 * 1 2 3 28 28 H 1.08997 * 109.47370 * 239.99793 * 2 1 3 29 29 H 1.09007 * 109.46975 * 181.61610 * 3 2 1 30 30 H 1.09000 * 109.47446 * 301.61293 * 3 2 1 31 31 H 1.08990 * 109.47508 * 61.62023 * 3 2 1 32 32 H 0.96998 * 120.00919 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47348 * 150.00057 * 13 4 2 34 34 H 1.09000 * 109.47126 * 30.00653 * 13 4 2 35 35 H 1.08999 * 109.47159 * 59.99436 * 14 13 4 36 36 H 1.08998 * 109.46540 * 300.00025 * 14 13 4 37 37 H 1.08999 * 109.47691 * 59.99654 * 15 14 13 38 38 H 1.08997 * 109.46870 * 299.99317 * 15 14 13 39 39 H 0.96991 * 120.00132 * 359.97438 * 16 15 14 40 40 H 1.08999 * 109.47132 * 59.99723 * 19 17 16 41 41 H 1.08998 * 109.46713 * 300.00222 * 19 17 16 42 42 H 1.08001 * 126.58205 * 359.97438 * 21 20 19 43 43 H 1.07995 * 125.78833 * 179.76892 * 22 21 20 44 44 H 1.08002 * 125.78854 * 179.78560 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7757 -0.1649 2.4372 6 1 0.8338 0.3220 2.6427 7 6 2.7403 -0.2580 3.4310 8 7 4.0013 -0.4528 3.1082 9 14 2.2487 -0.1067 5.2269 10 1 1.2789 -1.1788 5.5667 11 1 3.4547 -0.2398 6.0831 12 1 1.6218 1.2194 5.4585 13 6 2.7662 -1.9434 1.0648 14 6 1.7930 -3.1237 1.0930 15 6 2.5741 -4.4321 0.9564 16 7 1.6422 -5.5622 0.9828 17 6 2.1080 -6.8225 0.8764 18 8 3.2988 -7.0209 0.7594 19 6 1.1495 -7.9850 0.9041 20 6 1.9188 -9.2738 0.7695 21 6 2.4509 -10.0515 1.8235 22 6 3.0615 -11.1083 1.2581 23 8 2.9213 -11.0167 -0.0744 24 6 2.2317 -9.9045 -0.3766 25 1 -0.3633 0.5643 0.8587 26 1 -0.3633 0.4615 -0.9183 27 1 -0.3633 -1.0260 0.0593 28 1 1.8934 -0.5138 -0.8899 29 1 3.1296 1.4427 -0.0290 30 1 1.6532 1.9647 -0.8752 31 1 1.7006 1.9479 0.9040 32 1 4.6753 -0.5182 3.8026 33 1 3.4713 -2.0341 1.8910 34 1 3.3109 -1.9441 0.1207 35 1 1.0879 -3.0330 0.2668 36 1 1.2484 -3.1229 2.0372 37 1 3.2790 -4.5225 1.7829 38 1 3.1190 -4.4330 0.0124 39 1 0.6900 -5.4035 1.0768 40 1 0.4443 -7.8943 0.0779 41 1 0.6048 -7.9843 1.8483 42 1 2.3844 -9.8357 2.8797 43 1 3.5753 -11.8978 1.7863 44 1 1.9723 -9.5730 -1.3712 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753286217.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:12 Heat of formation + Delta-G solvation = -15.584981 kcal Electronic energy + Delta-G solvation = -23247.354173 eV Core-core repulsion = 19780.785008 eV Total energy + Delta-G solvation = -3466.569166 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.64079 -39.41787 -36.78711 -35.00363 -34.02684 -32.50043 -31.59398 -30.46302 -28.95807 -27.73381 -26.18329 -25.13421 -23.14949 -21.71341 -21.04300 -20.85428 -19.85203 -19.49677 -17.60759 -16.90676 -16.34828 -15.85536 -15.59014 -15.40551 -15.01474 -14.69427 -14.25881 -14.10577 -13.57469 -13.36154 -12.95962 -12.87059 -12.85668 -12.59269 -12.38107 -11.80771 -11.58249 -11.48411 -11.38315 -11.29629 -10.94861 -10.74771 -10.63402 -10.43913 -10.20869 -10.01083 -9.92202 -9.61121 -9.56690 -9.45083 -8.79913 -8.63009 -8.45760 -6.54179 -5.76173 -3.34069 1.67569 2.44143 2.79382 3.03922 3.36046 3.43352 3.44159 3.52282 4.48337 4.60912 4.65486 4.86054 5.04771 5.24686 5.25446 5.34080 5.37706 5.57325 5.68800 5.82675 5.88389 5.94857 6.04038 6.06238 6.18562 6.31920 6.36736 6.42241 6.44857 6.46199 6.69645 6.73424 6.76485 6.79649 6.83264 6.99829 7.13271 7.22081 7.34720 7.69999 7.71101 7.85185 8.40737 8.54945 9.22016 9.85014 10.43597 11.23616 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019522 B = 0.002963 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.925939 B = 9446.179209 C =10289.601794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.162 3.838 3 C -0.145 4.145 4 N -0.579 5.579 5 C -0.253 4.253 6 H 0.059 0.941 7 C 0.012 3.988 8 N -0.886 5.886 9 Si 0.893 3.107 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.282 1.282 13 C 0.150 3.850 14 C -0.145 4.145 15 C 0.121 3.879 16 N -0.728 5.728 17 C 0.507 3.493 18 O -0.536 6.536 19 C -0.072 4.072 20 C -0.161 4.161 21 C -0.199 4.199 22 C -0.046 4.046 23 O -0.178 6.178 24 C -0.029 4.029 25 H 0.051 0.949 26 H 0.034 0.966 27 H 0.043 0.957 28 H 0.044 0.956 29 H 0.047 0.953 30 H 0.029 0.971 31 H 0.057 0.943 32 H 0.254 0.746 33 H 0.097 0.903 34 H 0.024 0.976 35 H 0.048 0.952 36 H 0.064 0.936 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.398 0.602 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.146 0.854 43 H 0.201 0.799 44 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.001 -15.680 -5.779 18.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.055 3.945 3 C -0.204 4.204 4 N -0.299 5.299 5 C -0.382 4.382 6 H 0.076 0.924 7 C -0.188 4.188 8 N -0.529 5.529 9 Si 0.723 3.277 10 H -0.210 1.210 11 H -0.217 1.217 12 H -0.208 1.208 13 C 0.023 3.977 14 C -0.185 4.185 15 C -0.002 4.002 16 N -0.379 5.379 17 C 0.292 3.708 18 O -0.413 6.413 19 C -0.112 4.112 20 C -0.162 4.162 21 C -0.218 4.218 22 C -0.113 4.113 23 O -0.074 6.074 24 C -0.097 4.097 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.042 0.958 35 H 0.067 0.933 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.232 0.768 40 H 0.118 0.882 41 H 0.120 0.880 42 H 0.164 0.836 43 H 0.217 0.783 44 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -5.834 -15.992 -5.970 18.040 hybrid contribution -0.753 0.368 1.312 1.557 sum -6.587 -15.624 -4.658 17.584 Atomic orbital electron populations 1.22206 0.98948 1.00461 0.99701 1.20411 0.91934 0.92315 0.89849 1.22036 1.00833 0.97856 0.99700 1.43853 1.64360 1.20516 1.01207 1.18852 0.97437 1.34665 0.87291 0.92354 1.25151 0.94520 1.00514 0.98640 1.69965 0.99387 1.51495 1.32021 0.86532 0.77425 0.78180 0.85585 1.21035 1.21687 1.20831 1.20815 0.93092 0.82896 1.00870 1.22487 1.00366 0.94220 1.01445 1.21456 0.92331 0.84734 1.01712 1.46197 1.11214 1.06052 1.74456 1.20560 0.89567 0.83972 0.76707 1.90716 1.16717 1.85151 1.48682 1.20016 0.96964 0.89348 1.04906 1.19812 1.05234 0.97940 0.93242 1.21689 1.03476 0.96284 1.00321 1.23933 1.04869 1.02130 0.80412 1.84048 1.58836 1.39528 1.24968 1.23767 0.98954 0.87214 0.99776 0.92980 0.94646 0.93791 0.93755 0.93342 0.95222 0.92368 0.93545 0.88571 0.95801 0.93306 0.91715 0.91641 0.92156 0.76811 0.88201 0.88026 0.83637 0.78266 0.78380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.75 9.19 37.16 0.34 -2.41 16 2 C 0.16 3.29 3.37 -67.93 -0.23 3.06 16 3 C -0.15 -2.92 9.11 37.16 0.34 -2.58 16 4 N -0.58 -13.58 2.37 -165.66 -0.39 -13.97 16 5 C -0.25 -6.54 8.04 -15.06 -0.12 -6.66 16 6 H 0.06 1.53 7.14 -52.49 -0.37 1.15 16 7 C 0.01 0.32 4.96 -17.43 -0.09 0.23 16 8 N -0.89 -24.88 11.43 55.49 0.63 -24.24 16 9 Si 0.89 21.15 29.60 -169.99 -5.03 16.11 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.15 3.34 5.28 -4.04 -0.02 3.31 16 14 C -0.14 -2.61 5.65 -26.73 -0.15 -2.76 16 15 C 0.12 2.02 5.67 -4.04 -0.02 2.00 16 16 N -0.73 -9.86 5.56 -60.29 -0.33 -10.20 16 17 C 0.51 7.22 7.82 -10.98 -0.09 7.13 16 18 O -0.54 -10.10 16.03 5.56 0.09 -10.01 16 19 C -0.07 -0.72 6.22 -29.04 -0.18 -0.90 16 20 C -0.16 -1.86 4.66 -104.74 -0.49 -2.35 16 21 C -0.20 -2.23 10.87 -39.70 -0.43 -2.66 16 22 C -0.05 -0.46 12.09 29.42 0.36 -0.11 16 23 O -0.18 -2.03 10.65 5.71 0.06 -1.97 16 24 C -0.03 -0.32 12.01 29.41 0.35 0.04 16 25 H 0.05 0.99 7.32 -51.93 -0.38 0.61 16 26 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.04 0.86 7.77 -51.93 -0.40 0.46 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.06 1.26 7.50 -51.93 -0.39 0.87 16 32 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 33 H 0.10 2.46 5.48 -51.93 -0.28 2.18 16 34 H 0.02 0.51 7.88 -51.93 -0.41 0.10 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.40 4.26 8.47 -40.82 -0.35 3.91 16 40 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.15 1.43 8.06 -52.49 -0.42 1.01 16 43 H 0.20 1.23 8.06 -52.49 -0.42 0.80 16 44 H 0.20 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 367.37 15.07 5.54 5.54 Total: -1.00 -32.06 367.37 -7.09 -39.14 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -7.22 Total: 4.26 kcal Atomic # 6 Polarization: -4.22 SS G_CDS: -0.43 Total: -4.65 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.09 Total: -48.42 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.15 Total: -11.98 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.03 Total: 16.11 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -32.06 -7.09 -39.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753286217.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.559 kcal (2) G-P(sol) polarization free energy of solvation -32.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds