Wall clock time and date at job start Tue Mar 31 2020 06:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46781 * 2 1 4 4 N 1.46500 * 109.47106 * 119.99604 * 2 1 3 5 5 C 1.36936 * 119.99830 * 294.90622 * 4 2 1 6 6 H 1.08002 * 120.00040 * 37.14769 * 5 4 2 7 7 C 1.38813 * 119.99678 * 217.14184 * 5 4 2 8 8 N 1.31611 * 120.00382 * 21.27020 * 7 5 4 9 9 Si 1.86803 * 119.99830 * 201.26484 * 7 5 4 10 10 H 1.48507 * 109.47231 * 60.00450 * 9 7 5 11 11 H 1.48504 * 109.46966 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47524 * 300.00338 * 9 7 5 13 13 C 1.46498 * 120.00081 * 114.90085 * 4 2 1 14 14 C 1.53001 * 109.47554 * 270.00505 * 13 4 2 15 15 C 1.52998 * 109.47043 * 180.02562 * 14 13 4 16 16 N 1.46507 * 109.46728 * 180.02562 * 15 14 13 17 17 C 1.34781 * 119.99716 * 179.97438 * 16 15 14 18 18 O 1.21280 * 119.99675 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99886 * 179.97438 * 17 16 15 20 20 C 1.50697 * 109.47178 * 180.02562 * 19 17 16 21 21 C 1.41386 * 126.57980 * 89.99840 * 20 19 17 22 22 C 1.34515 * 106.83861 * 180.26298 * 21 20 19 23 23 O 1.34302 * 108.42126 * 359.63656 * 22 21 20 24 24 C 1.34304 * 109.47637 * 0.37224 * 23 22 21 25 25 H 1.08992 * 109.47241 * 303.31149 * 1 2 3 26 26 H 1.09006 * 109.46637 * 63.31618 * 1 2 3 27 27 H 1.09000 * 109.46878 * 183.30866 * 1 2 3 28 28 H 1.08997 * 109.47370 * 239.99793 * 2 1 3 29 29 H 1.09007 * 109.46975 * 181.61610 * 3 2 1 30 30 H 1.09000 * 109.47446 * 301.61293 * 3 2 1 31 31 H 1.08990 * 109.47508 * 61.62023 * 3 2 1 32 32 H 0.96998 * 120.00919 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47348 * 150.00057 * 13 4 2 34 34 H 1.09000 * 109.47126 * 30.00653 * 13 4 2 35 35 H 1.08999 * 109.47159 * 59.99436 * 14 13 4 36 36 H 1.08998 * 109.46540 * 300.00025 * 14 13 4 37 37 H 1.08999 * 109.47691 * 59.99654 * 15 14 13 38 38 H 1.08997 * 109.46870 * 299.99317 * 15 14 13 39 39 H 0.96991 * 120.00132 * 359.97438 * 16 15 14 40 40 H 1.08999 * 109.47132 * 59.99723 * 19 17 16 41 41 H 1.08998 * 109.46713 * 300.00222 * 19 17 16 42 42 H 1.08001 * 126.58205 * 359.97438 * 21 20 19 43 43 H 1.07995 * 125.78833 * 179.76892 * 22 21 20 44 44 H 1.08002 * 125.78854 * 179.78560 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 1.7757 -0.1649 2.4372 6 1 0.8338 0.3220 2.6427 7 6 2.7403 -0.2580 3.4310 8 7 4.0013 -0.4528 3.1082 9 14 2.2487 -0.1067 5.2269 10 1 1.2789 -1.1788 5.5667 11 1 3.4547 -0.2398 6.0831 12 1 1.6218 1.2194 5.4585 13 6 2.7662 -1.9434 1.0648 14 6 1.7930 -3.1237 1.0930 15 6 2.5741 -4.4321 0.9564 16 7 1.6422 -5.5622 0.9828 17 6 2.1080 -6.8225 0.8764 18 8 3.2988 -7.0209 0.7594 19 6 1.1495 -7.9850 0.9041 20 6 1.9188 -9.2738 0.7695 21 6 2.4509 -10.0515 1.8235 22 6 3.0615 -11.1083 1.2581 23 8 2.9213 -11.0167 -0.0744 24 6 2.2317 -9.9045 -0.3766 25 1 -0.3633 0.5643 0.8587 26 1 -0.3633 0.4615 -0.9183 27 1 -0.3633 -1.0260 0.0593 28 1 1.8934 -0.5138 -0.8899 29 1 3.1296 1.4427 -0.0290 30 1 1.6532 1.9647 -0.8752 31 1 1.7006 1.9479 0.9040 32 1 4.6753 -0.5182 3.8026 33 1 3.4713 -2.0341 1.8910 34 1 3.3109 -1.9441 0.1207 35 1 1.0879 -3.0330 0.2668 36 1 1.2484 -3.1229 2.0372 37 1 3.2790 -4.5225 1.7829 38 1 3.1190 -4.4330 0.0124 39 1 0.6900 -5.4035 1.0768 40 1 0.4443 -7.8943 0.0779 41 1 0.6048 -7.9843 1.8483 42 1 2.3844 -9.8357 2.8797 43 1 3.5753 -11.8978 1.7863 44 1 1.9723 -9.5730 -1.3712 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753286217.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:52:11 Heat of formation + Delta-G solvation = -35.518948 kcal Electronic energy + Delta-G solvation = -23248.218575 eV Core-core repulsion = 19780.785008 eV Total energy + Delta-G solvation = -3467.433567 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.42450 -40.60229 -38.50115 -36.34617 -34.90882 -34.27480 -33.17125 -31.39633 -30.46777 -28.77875 -27.71535 -26.86417 -24.76521 -22.49287 -22.36402 -22.06562 -21.29261 -20.83043 -18.46307 -18.18354 -17.92335 -17.01624 -16.74906 -16.66629 -16.60150 -15.90068 -15.68919 -15.47244 -15.09216 -14.63347 -14.45881 -14.04406 -13.97581 -13.66434 -13.41520 -13.27393 -13.23309 -13.08500 -12.81286 -12.68123 -12.50497 -12.41919 -12.33393 -12.13972 -11.89212 -11.69369 -11.31025 -11.23817 -11.06442 -10.51833 -10.44652 -10.05991 -9.41221 -8.47730 -7.74976 -5.36466 0.89538 1.46674 1.49423 1.54823 1.60073 1.69175 2.31420 2.43346 2.55431 3.31246 3.63854 3.79701 3.96740 4.06067 4.17310 4.20524 4.37326 4.38032 4.54926 4.56898 4.64493 4.65407 4.74809 4.80743 4.82645 4.98697 5.01521 5.11889 5.12692 5.17466 5.22185 5.24684 5.31914 5.49430 5.51735 5.60020 5.64533 5.69768 5.76700 5.91654 6.21387 6.54584 6.63725 7.25120 7.32522 7.96442 8.48296 9.20060 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.019522 B = 0.002963 C = 0.002721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.925939 B = 9446.179209 C =10289.601794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.151 3.849 3 C -0.138 4.138 4 N -0.594 5.594 5 C -0.245 4.245 6 H 0.056 0.944 7 C -0.038 4.038 8 N -0.919 5.919 9 Si 0.947 3.053 10 H -0.279 1.279 11 H -0.300 1.300 12 H -0.277 1.277 13 C 0.149 3.851 14 C -0.120 4.120 15 C 0.134 3.866 16 N -0.717 5.717 17 C 0.505 3.495 18 O -0.587 6.587 19 C -0.061 4.061 20 C -0.184 4.184 21 C -0.226 4.226 22 C -0.047 4.047 23 O -0.191 6.191 24 C -0.039 4.039 25 H 0.036 0.964 26 H 0.066 0.934 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.023 0.977 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.247 0.753 33 H 0.060 0.940 34 H 0.024 0.976 35 H 0.070 0.930 36 H 0.052 0.948 37 H 0.037 0.963 38 H 0.056 0.944 39 H 0.416 0.584 40 H 0.135 0.865 41 H 0.123 0.877 42 H 0.152 0.848 43 H 0.232 0.768 44 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.387 -16.499 -6.758 20.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.046 3.954 3 C -0.196 4.196 4 N -0.315 5.315 5 C -0.375 4.375 6 H 0.074 0.926 7 C -0.235 4.235 8 N -0.563 5.563 9 Si 0.776 3.224 10 H -0.205 1.205 11 H -0.226 1.226 12 H -0.203 1.203 13 C 0.022 3.978 14 C -0.160 4.160 15 C 0.009 3.991 16 N -0.369 5.369 17 C 0.293 3.707 18 O -0.467 6.467 19 C -0.100 4.100 20 C -0.186 4.186 21 C -0.245 4.245 22 C -0.114 4.114 23 O -0.087 6.087 24 C -0.106 4.106 25 H 0.055 0.945 26 H 0.085 0.915 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.055 0.945 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.042 0.958 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.253 0.747 40 H 0.153 0.847 41 H 0.141 0.859 42 H 0.170 0.830 43 H 0.249 0.751 44 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -8.290 -16.807 -6.960 19.991 hybrid contribution 0.003 0.636 1.539 1.665 sum -8.287 -16.172 -5.420 18.962 Atomic orbital electron populations 1.22048 0.96470 1.00935 1.00625 1.20670 0.93737 0.92045 0.88992 1.21958 0.99219 0.98168 1.00302 1.44089 1.64435 1.21339 1.01590 1.19009 0.96866 1.33254 0.88397 0.92621 1.25755 0.94519 1.01461 1.01775 1.70109 1.00162 1.53645 1.32398 0.85666 0.76667 0.78289 0.81789 1.20464 1.22616 1.20308 1.20712 0.93499 0.84282 0.99310 1.22110 0.99342 0.93015 1.01559 1.21075 0.92262 0.85391 1.00359 1.46009 1.11654 1.05222 1.74020 1.21345 0.89553 0.84736 0.75063 1.90698 1.19217 1.85840 1.50994 1.20050 0.96095 0.86400 1.07495 1.20145 1.06037 0.98721 0.93656 1.22001 1.04443 0.97115 1.00919 1.24600 1.04158 1.02579 0.80025 1.84051 1.59028 1.39936 1.25680 1.24330 0.98473 0.86942 1.00859 0.94473 0.91545 0.93247 0.92499 0.95816 0.91582 0.94500 0.94370 0.92224 0.95787 0.91175 0.92898 0.94412 0.92588 0.74745 0.84708 0.85881 0.83024 0.75141 0.75984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.65 9.19 71.98 0.66 -3.98 16 2 C 0.15 5.90 3.37 44.99 0.15 6.05 16 3 C -0.14 -5.38 9.11 71.98 0.66 -4.72 16 4 N -0.59 -27.66 2.37 -678.04 -1.61 -29.26 16 5 C -0.24 -12.67 8.04 84.03 0.68 -12.00 16 6 H 0.06 2.89 7.14 -2.91 -0.02 2.87 16 7 C -0.04 -2.07 4.96 84.86 0.42 -1.65 16 8 N -0.92 -53.21 11.43 21.65 0.25 -52.97 16 9 Si 0.95 44.02 29.60 68.60 2.03 46.05 16 10 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.30 -14.24 7.11 99.48 0.71 -13.54 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 13 C 0.15 6.66 5.28 86.38 0.46 7.12 16 14 C -0.12 -4.22 5.65 30.59 0.17 -4.05 16 15 C 0.13 4.43 5.67 86.38 0.49 4.92 16 16 N -0.72 -18.24 5.56 -463.05 -2.57 -20.82 16 17 C 0.51 13.72 7.82 87.66 0.69 14.40 16 18 O -0.59 -22.16 16.03 -3.03 -0.05 -22.21 16 19 C -0.06 -1.06 6.22 29.10 0.18 -0.88 16 20 C -0.18 -3.98 4.66 -19.94 -0.09 -4.07 16 21 C -0.23 -4.85 10.87 22.19 0.24 -4.61 16 22 C -0.05 -0.89 12.09 66.97 0.81 -0.08 16 23 O -0.19 -4.15 10.65 -2.48 -0.03 -4.18 16 24 C -0.04 -0.78 12.01 66.97 0.80 0.02 16 25 H 0.04 1.31 7.32 -2.39 -0.02 1.30 16 26 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 27 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.06 2.07 7.77 -2.39 -0.02 2.05 16 29 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.04 1.56 7.50 -2.39 -0.02 1.55 16 32 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 33 H 0.06 3.17 5.48 -2.39 -0.01 3.16 16 34 H 0.02 1.04 7.88 -2.39 -0.02 1.02 16 35 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 36 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.06 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.42 7.71 8.47 -92.71 -0.79 6.92 16 40 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 43 H 0.23 2.42 8.06 -2.91 -0.02 2.40 16 44 H 0.22 2.98 8.06 -2.91 -0.02 2.96 16 Total: -1.00 -71.45 367.37 4.53 -66.92 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: 0.19 Total: 19.98 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 6.31 Total: -3.52 kcal Atomic # 7 Polarization: -99.11 SS G_CDS: -3.93 Total: -103.05 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: -0.07 Total: -26.38 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -71.45 4.53 -66.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753286217.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.398 kcal (2) G-P(sol) polarization free energy of solvation -71.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds