Wall clock time and date at job start Tue Mar 31 2020 06:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47125 * 2 1 4 4 N 1.46502 * 109.46956 * 300.00017 * 3 2 1 5 5 C 1.36937 * 120.00014 * 180.02562 * 4 3 2 6 6 H 1.08004 * 119.99898 * 359.97438 * 5 4 3 7 7 C 1.38810 * 120.00100 * 179.97438 * 5 4 3 8 8 N 1.31620 * 120.00042 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99958 * 0.02562 * 7 5 4 10 10 H 1.48490 * 109.47349 * 89.99470 * 9 7 5 11 11 H 1.48497 * 109.47022 * 209.99844 * 9 7 5 12 12 H 1.48503 * 109.46892 * 329.99522 * 9 7 5 13 13 N 1.46498 * 109.47240 * 239.99393 * 2 1 3 14 14 C 1.34778 * 119.99531 * 175.35391 * 13 2 1 15 15 O 1.21606 * 120.00474 * 356.07186 * 14 13 2 16 16 C 1.47107 * 119.99267 * 175.79506 * 14 13 2 17 17 C 1.32086 * 118.87199 * 179.73245 * 16 14 13 18 18 C 1.50270 * 122.57842 * 180.14952 * 17 16 14 19 19 O 1.42899 * 110.14296 * 344.79925 * 18 17 16 20 20 C 1.43266 * 113.09689 * 50.33145 * 19 18 17 21 21 C 1.50410 * 118.88031 * 0.02562 * 16 14 13 22 22 C 1.53003 * 109.46812 * 119.99789 * 2 1 3 23 23 C 1.52992 * 117.49794 * 121.83680 * 22 2 1 24 24 C 1.53002 * 117.50141 * 53.17428 * 22 2 1 25 25 H 1.08994 * 109.46840 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47355 * 300.00517 * 1 2 3 27 27 H 1.08995 * 109.46902 * 60.00129 * 1 2 3 28 28 H 1.09000 * 109.46921 * 59.99467 * 3 2 1 29 29 H 1.08995 * 109.47471 * 179.97438 * 3 2 1 30 30 H 0.96995 * 120.00004 * 359.97438 * 4 3 2 31 31 H 0.96997 * 119.99786 * 180.02562 * 8 7 5 32 32 H 0.96998 * 119.99724 * 355.36241 * 13 2 1 33 33 H 1.08003 * 118.71519 * 0.37113 * 17 16 14 34 34 H 1.09002 * 109.49764 * 224.49761 * 18 17 16 35 35 H 1.08994 * 109.08319 * 104.84688 * 18 17 16 36 36 H 1.09000 * 109.63750 * 171.47325 * 20 19 18 37 37 H 1.09003 * 109.63573 * 50.85893 * 20 19 18 38 38 H 1.09004 * 109.45322 * 283.35450 * 21 16 14 39 39 H 1.09000 * 109.45654 * 43.28542 * 21 16 14 40 40 H 1.09004 * 115.54862 * 267.50127 * 22 2 1 41 41 H 1.08997 * 117.49968 * 359.97438 * 23 22 2 42 42 H 1.09007 * 117.50283 * 145.02159 * 23 22 2 43 43 H 1.09000 * 117.49728 * 214.98266 * 24 22 2 44 44 H 1.08997 * 117.49769 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5517 2.1331 -1.1962 5 6 1.8829 3.4440 -1.4132 6 1 2.5038 3.9688 -0.7023 7 6 1.4206 4.0981 -2.5468 8 7 1.7386 5.3583 -2.7552 9 14 0.3461 3.1905 -3.7761 10 1 -1.0815 3.3550 -3.4020 11 1 0.5692 3.7473 -5.1345 12 1 0.6965 1.7474 -3.7690 13 7 2.0184 -0.6907 -1.1961 14 6 3.3399 -0.7326 -1.4576 15 8 4.1209 -0.1370 -0.7405 16 6 3.8380 -1.5037 -2.6071 17 6 5.1369 -1.5252 -2.8461 18 6 5.7352 -2.2824 -3.9979 19 8 4.7826 -3.2068 -4.5271 20 6 3.5113 -2.6070 -4.8039 21 6 2.8503 -2.2354 -3.4739 22 6 2.0400 -0.7212 1.2493 23 6 2.9503 -1.9334 1.0431 24 6 1.5085 -2.1306 1.5179 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.1300 1.4426 0.0005 30 1 0.9944 1.6616 -1.8348 31 1 1.4152 5.8155 -3.5471 32 1 1.3907 -1.1178 -1.7997 33 1 5.7951 -0.9801 -2.1857 34 1 6.6162 -2.8265 -3.6573 35 1 6.0250 -1.5765 -4.7763 36 1 2.8810 -3.3158 -5.3410 37 1 3.6531 -1.7093 -5.4057 38 1 2.5231 -3.1424 -2.9655 39 1 1.9888 -1.5948 -3.6630 40 1 2.2371 -0.0848 2.1120 41 1 3.1857 -2.2174 0.0174 42 1 3.7461 -2.0948 1.7703 43 1 1.3563 -2.4215 2.5572 44 1 0.7953 -2.5439 0.8048 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753517223.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:38 Heat of formation + Delta-G solvation = -11.761361 kcal Electronic energy + Delta-G solvation = -25286.645947 eV Core-core repulsion = 21820.242586 eV Total energy + Delta-G solvation = -3466.403361 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.67542 -39.25424 -37.25156 -35.12242 -33.94079 -33.27284 -31.59064 -31.07023 -29.90761 -26.48034 -26.04379 -24.04400 -23.51015 -22.19525 -21.76374 -21.09286 -19.18159 -18.45876 -17.77023 -17.62988 -16.48977 -15.95849 -15.43347 -15.35030 -15.21870 -14.51303 -14.38120 -13.79791 -13.76172 -13.62637 -13.48136 -12.93463 -12.84779 -12.59053 -12.23174 -12.22218 -11.98577 -11.68673 -11.58266 -11.22671 -11.03113 -10.96314 -10.87033 -10.84093 -10.22121 -10.19241 -10.11694 -9.87144 -9.54923 -9.31500 -9.14446 -8.75583 -8.67053 -7.10697 -5.71149 -3.04127 1.40433 3.31610 3.33161 3.35817 3.42921 3.51520 3.68664 3.95157 4.54791 4.61013 4.61734 4.70570 4.73185 5.00581 5.01688 5.07246 5.11186 5.21498 5.30200 5.39514 5.40576 5.45821 5.55061 5.58211 5.61880 5.68147 5.69807 5.71803 5.92655 6.05899 6.10782 6.20748 6.22472 6.27507 6.38065 6.44072 6.52814 6.84878 6.88207 7.11398 7.81109 8.07363 8.47765 8.56607 9.27932 10.00037 10.21200 11.48060 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011365 B = 0.006805 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.206692 B = 4113.568018 C = 5581.207388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.196 3.804 3 C 0.144 3.856 4 N -0.749 5.749 5 C -0.231 4.231 6 H 0.089 0.911 7 C 0.000 4.000 8 N -0.937 5.937 9 Si 0.883 3.117 10 H -0.285 1.285 11 H -0.292 1.292 12 H -0.281 1.281 13 N -0.717 5.717 14 C 0.559 3.441 15 O -0.519 6.519 16 C -0.164 4.164 17 C -0.119 4.119 18 C 0.086 3.914 19 O -0.379 6.379 20 C 0.059 3.941 21 C -0.120 4.120 22 C -0.143 4.143 23 C -0.163 4.163 24 C -0.183 4.183 25 H 0.055 0.945 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.029 0.971 29 H 0.064 0.936 30 H 0.357 0.643 31 H 0.257 0.743 32 H 0.393 0.607 33 H 0.137 0.863 34 H 0.111 0.889 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.059 0.941 38 H 0.086 0.914 39 H 0.085 0.915 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.087 0.913 43 H 0.089 0.911 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.080 -20.715 0.822 20.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.110 3.890 3 C 0.016 3.984 4 N -0.395 5.395 5 C -0.361 4.361 6 H 0.107 0.893 7 C -0.195 4.195 8 N -0.586 5.586 9 Si 0.714 3.286 10 H -0.212 1.212 11 H -0.219 1.219 12 H -0.208 1.208 13 N -0.368 5.368 14 C 0.347 3.653 15 O -0.396 6.396 16 C -0.167 4.167 17 C -0.139 4.139 18 C 0.009 3.991 19 O -0.298 6.298 20 C -0.017 4.017 21 C -0.158 4.158 22 C -0.163 4.163 23 C -0.200 4.200 24 C -0.220 4.220 25 H 0.074 0.926 26 H 0.095 0.905 27 H 0.084 0.916 28 H 0.047 0.953 29 H 0.082 0.918 30 H 0.190 0.810 31 H 0.068 0.932 32 H 0.227 0.773 33 H 0.155 0.845 34 H 0.129 0.871 35 H 0.091 0.909 36 H 0.118 0.882 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.128 0.872 41 H 0.110 0.890 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.768 -20.247 1.365 20.370 hybrid contribution -1.208 -0.277 -1.176 1.708 sum 0.560 -20.524 0.190 20.532 Atomic orbital electron populations 1.22004 0.93338 1.01505 1.03801 1.20133 0.93566 0.92829 0.82498 1.21156 0.99740 0.87265 0.90207 1.42593 1.62031 1.11032 1.23849 1.19082 1.25760 0.85620 1.05627 0.89312 1.24638 1.00891 0.95856 0.98108 1.69698 1.50187 1.09719 1.29011 0.86562 0.81108 0.79013 0.81919 1.21214 1.21875 1.20753 1.45964 1.07187 1.57139 1.26521 1.18057 0.82527 0.80362 0.84349 1.90762 1.55815 1.43585 1.49423 1.20959 0.95443 1.01890 0.98442 1.23661 0.96240 0.96419 0.97599 1.21590 0.91938 0.92303 0.93229 1.88103 1.22356 1.35543 1.83753 1.22649 0.84892 0.98894 0.95293 1.21072 0.97956 1.00443 0.96281 1.22533 1.04102 0.90254 0.99367 1.22938 0.92836 1.02104 1.02119 1.22970 0.97497 0.99937 1.01565 0.92608 0.90520 0.91621 0.95294 0.91815 0.81037 0.93238 0.77270 0.84518 0.87106 0.90924 0.88152 0.92289 0.89576 0.89655 0.87153 0.89002 0.89417 0.89235 0.89212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.18 37.16 0.30 -1.73 16 2 C 0.20 3.07 0.55 -131.82 -0.07 3.00 16 3 C 0.14 2.99 4.83 -4.04 -0.02 2.97 16 4 N -0.75 -18.18 4.98 -59.91 -0.30 -18.48 16 5 C -0.23 -6.75 10.47 -15.06 -0.16 -6.91 16 6 H 0.09 2.82 8.06 -52.48 -0.42 2.40 16 7 C 0.00 0.00 5.50 -17.43 -0.10 -0.10 16 8 N -0.94 -30.13 13.97 55.49 0.78 -29.36 16 9 Si 0.88 22.30 27.74 -169.99 -4.71 17.58 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 12 H -0.28 -6.56 6.52 56.52 0.37 -6.19 16 13 N -0.72 -10.67 4.15 -48.77 -0.20 -10.87 16 14 C 0.56 9.25 4.74 -12.66 -0.06 9.19 16 15 O -0.52 -10.32 12.32 5.27 0.06 -10.26 16 16 C -0.16 -2.27 5.86 -103.09 -0.60 -2.87 16 17 C -0.12 -1.54 9.58 -36.44 -0.35 -1.89 16 18 C 0.09 0.88 7.04 35.80 0.25 1.13 16 19 O -0.38 -4.31 10.83 -35.23 -0.38 -4.70 16 20 C 0.06 0.59 6.88 37.21 0.26 0.85 16 21 C -0.12 -1.29 5.33 -27.97 -0.15 -1.44 16 22 C -0.14 -2.00 4.86 -90.62 -0.44 -2.44 16 23 C -0.16 -2.17 8.52 -26.70 -0.23 -2.40 16 24 C -0.18 -2.06 9.68 -26.69 -0.26 -2.32 16 25 H 0.05 0.61 6.89 -51.93 -0.36 0.25 16 26 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 1.00 6.86 -51.93 -0.36 0.64 16 28 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 1.50 5.72 -51.93 -0.30 1.21 16 30 H 0.36 8.29 4.21 -40.82 -0.17 8.12 16 31 H 0.26 7.87 8.31 -40.82 -0.34 7.54 16 32 H 0.39 4.91 6.75 -40.82 -0.28 4.63 16 33 H 0.14 1.88 7.29 -52.48 -0.38 1.50 16 34 H 0.11 0.90 8.14 -51.93 -0.42 0.47 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.60 8.09 -51.93 -0.42 0.18 16 38 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.09 0.89 7.24 -51.93 -0.38 0.51 16 40 H 0.11 1.56 8.06 -51.93 -0.42 1.15 16 41 H 0.09 1.30 5.16 -51.93 -0.27 1.04 16 42 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 43 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 44 H 0.09 0.94 7.17 -51.93 -0.37 0.57 16 LS Contribution 341.72 15.07 5.15 5.15 Total: -1.00 -34.83 341.72 -7.90 -42.73 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: -6.67 Total: 13.18 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -1.62 Total: -4.98 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: 0.27 Total: -58.71 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: -0.32 Total: -14.95 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -4.71 Total: 17.58 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -34.83 -7.90 -42.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753517223.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.966 kcal (2) G-P(sol) polarization free energy of solvation -34.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds