Wall clock time and date at job start Tue Mar 31 2020 06:58:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47125 * 2 1 4 4 N 1.46502 * 109.46956 * 300.00017 * 3 2 1 5 5 C 1.36937 * 120.00014 * 180.02562 * 4 3 2 6 6 H 1.08004 * 119.99898 * 359.97438 * 5 4 3 7 7 C 1.38810 * 120.00100 * 179.97438 * 5 4 3 8 8 N 1.31620 * 120.00042 * 179.97438 * 7 5 4 9 9 Si 1.86807 * 119.99958 * 0.02562 * 7 5 4 10 10 H 1.48490 * 109.47349 * 89.99470 * 9 7 5 11 11 H 1.48497 * 109.47022 * 209.99844 * 9 7 5 12 12 H 1.48503 * 109.46892 * 329.99522 * 9 7 5 13 13 N 1.46498 * 109.47240 * 239.99393 * 2 1 3 14 14 C 1.34778 * 119.99531 * 175.35391 * 13 2 1 15 15 O 1.21606 * 120.00474 * 356.07186 * 14 13 2 16 16 C 1.47107 * 119.99267 * 175.79506 * 14 13 2 17 17 C 1.32086 * 118.87199 * 179.73245 * 16 14 13 18 18 C 1.50270 * 122.57842 * 180.14952 * 17 16 14 19 19 O 1.42899 * 110.14296 * 344.79925 * 18 17 16 20 20 C 1.43266 * 113.09689 * 50.33145 * 19 18 17 21 21 C 1.50410 * 118.88031 * 0.02562 * 16 14 13 22 22 C 1.53003 * 109.46812 * 119.99789 * 2 1 3 23 23 C 1.52992 * 117.49794 * 121.83680 * 22 2 1 24 24 C 1.53002 * 117.50141 * 53.17428 * 22 2 1 25 25 H 1.08994 * 109.46840 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47355 * 300.00517 * 1 2 3 27 27 H 1.08995 * 109.46902 * 60.00129 * 1 2 3 28 28 H 1.09000 * 109.46921 * 59.99467 * 3 2 1 29 29 H 1.08995 * 109.47471 * 179.97438 * 3 2 1 30 30 H 0.96995 * 120.00004 * 359.97438 * 4 3 2 31 31 H 0.96997 * 119.99786 * 180.02562 * 8 7 5 32 32 H 0.96998 * 119.99724 * 355.36241 * 13 2 1 33 33 H 1.08003 * 118.71519 * 0.37113 * 17 16 14 34 34 H 1.09002 * 109.49764 * 224.49761 * 18 17 16 35 35 H 1.08994 * 109.08319 * 104.84688 * 18 17 16 36 36 H 1.09000 * 109.63750 * 171.47325 * 20 19 18 37 37 H 1.09003 * 109.63573 * 50.85893 * 20 19 18 38 38 H 1.09004 * 109.45322 * 283.35450 * 21 16 14 39 39 H 1.09000 * 109.45654 * 43.28542 * 21 16 14 40 40 H 1.09004 * 115.54862 * 267.50127 * 22 2 1 41 41 H 1.08997 * 117.49968 * 359.97438 * 23 22 2 42 42 H 1.09007 * 117.50283 * 145.02159 * 23 22 2 43 43 H 1.09000 * 117.49728 * 214.98266 * 24 22 2 44 44 H 1.08997 * 117.49769 * 359.97438 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 1.5517 2.1331 -1.1962 5 6 1.8829 3.4440 -1.4132 6 1 2.5038 3.9688 -0.7023 7 6 1.4206 4.0981 -2.5468 8 7 1.7386 5.3583 -2.7552 9 14 0.3461 3.1905 -3.7761 10 1 -1.0815 3.3550 -3.4020 11 1 0.5692 3.7473 -5.1345 12 1 0.6965 1.7474 -3.7690 13 7 2.0184 -0.6907 -1.1961 14 6 3.3399 -0.7326 -1.4576 15 8 4.1209 -0.1370 -0.7405 16 6 3.8380 -1.5037 -2.6071 17 6 5.1369 -1.5252 -2.8461 18 6 5.7352 -2.2824 -3.9979 19 8 4.7826 -3.2068 -4.5271 20 6 3.5113 -2.6070 -4.8039 21 6 2.8503 -2.2354 -3.4739 22 6 2.0400 -0.7212 1.2493 23 6 2.9503 -1.9334 1.0431 24 6 1.5085 -2.1306 1.5179 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 1.6766 1.9563 0.8899 29 1 3.1300 1.4426 0.0005 30 1 0.9944 1.6616 -1.8348 31 1 1.4152 5.8155 -3.5471 32 1 1.3907 -1.1178 -1.7997 33 1 5.7951 -0.9801 -2.1857 34 1 6.6162 -2.8265 -3.6573 35 1 6.0250 -1.5765 -4.7763 36 1 2.8810 -3.3158 -5.3410 37 1 3.6531 -1.7093 -5.4057 38 1 2.5231 -3.1424 -2.9655 39 1 1.9888 -1.5948 -3.6630 40 1 2.2371 -0.0848 2.1120 41 1 3.1857 -2.2174 0.0174 42 1 3.7461 -2.0948 1.7703 43 1 1.3563 -2.4215 2.5572 44 1 0.7953 -2.5439 0.8048 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753517223.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:37 Heat of formation + Delta-G solvation = -36.931290 kcal Electronic energy + Delta-G solvation = -25287.737397 eV Core-core repulsion = 21820.242586 eV Total energy + Delta-G solvation = -3467.494811 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.87324 -40.16752 -38.46009 -36.75817 -35.15833 -34.66336 -33.34174 -32.11655 -31.36770 -27.94777 -27.10889 -25.36446 -24.76859 -23.19798 -23.03466 -22.59494 -20.55999 -19.74818 -19.50781 -18.61422 -17.48113 -17.10334 -16.79981 -16.44030 -16.42293 -16.08441 -15.52213 -15.39808 -15.08203 -14.82385 -14.73453 -14.50514 -13.91008 -13.68097 -13.50604 -13.46897 -13.40817 -13.19505 -12.86438 -12.54345 -12.43463 -12.34013 -12.13393 -11.99276 -11.83765 -11.81129 -11.29374 -11.19254 -11.00304 -10.84446 -10.38945 -10.17290 -9.94128 -9.24555 -8.04276 -5.36840 0.33625 1.29208 1.37524 1.44308 2.17043 2.31454 2.45598 2.88682 2.93078 3.26161 3.49830 3.61228 3.69611 3.85768 3.90799 3.94077 3.99056 4.21829 4.26659 4.29059 4.32913 4.43736 4.50733 4.54066 4.67024 4.76826 4.77313 4.83740 4.87194 4.91744 4.93339 5.05084 5.17123 5.23430 5.25712 5.27545 5.29817 5.49840 5.66214 5.74112 6.06451 6.18529 6.63958 7.05845 7.35309 7.80239 8.04817 9.18161 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.011365 B = 0.006805 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2463.206692 B = 4113.568018 C = 5581.207388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.204 3.796 3 C 0.142 3.858 4 N -0.742 5.742 5 C -0.232 4.232 6 H 0.042 0.958 7 C -0.068 4.068 8 N -0.987 5.987 9 Si 0.960 3.040 10 H -0.271 1.271 11 H -0.296 1.296 12 H -0.248 1.248 13 N -0.707 5.707 14 C 0.551 3.449 15 O -0.565 6.565 16 C -0.182 4.182 17 C -0.119 4.119 18 C 0.088 3.912 19 O -0.388 6.388 20 C 0.056 3.944 21 C -0.116 4.116 22 C -0.164 4.164 23 C -0.174 4.174 24 C -0.145 4.145 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.053 0.947 28 H 0.021 0.979 29 H 0.031 0.969 30 H 0.366 0.634 31 H 0.258 0.742 32 H 0.408 0.592 33 H 0.118 0.882 34 H 0.133 0.867 35 H 0.084 0.916 36 H 0.128 0.872 37 H 0.055 0.945 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.109 0.891 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.117 -24.403 -0.475 24.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.118 3.882 3 C 0.015 3.985 4 N -0.388 5.388 5 C -0.363 4.363 6 H 0.060 0.940 7 C -0.259 4.259 8 N -0.638 5.638 9 Si 0.786 3.214 10 H -0.197 1.197 11 H -0.222 1.222 12 H -0.173 1.173 13 N -0.360 5.360 14 C 0.341 3.659 15 O -0.445 6.445 16 C -0.185 4.185 17 C -0.139 4.139 18 C 0.012 3.988 19 O -0.307 6.307 20 C -0.020 4.020 21 C -0.153 4.153 22 C -0.184 4.184 23 C -0.211 4.211 24 C -0.181 4.181 25 H 0.112 0.888 26 H 0.097 0.903 27 H 0.072 0.928 28 H 0.039 0.961 29 H 0.049 0.951 30 H 0.200 0.800 31 H 0.066 0.934 32 H 0.245 0.755 33 H 0.135 0.865 34 H 0.150 0.850 35 H 0.102 0.898 36 H 0.146 0.854 37 H 0.073 0.927 38 H 0.122 0.878 39 H 0.110 0.890 40 H 0.118 0.882 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.127 0.873 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -0.456 -23.995 0.083 23.999 hybrid contribution -0.381 0.966 -0.659 1.230 sum -0.837 -23.029 -0.576 23.051 Atomic orbital electron populations 1.22005 0.91098 1.03842 1.03303 1.19938 0.95023 0.89450 0.83779 1.21192 0.97908 0.90888 0.88489 1.42427 1.61977 1.09346 1.25087 1.18988 1.24841 0.87661 1.04856 0.93952 1.25577 1.02949 0.96843 1.00552 1.69914 1.51994 1.11993 1.29923 0.85333 0.79009 0.79119 0.77889 1.19702 1.22244 1.17283 1.45891 1.07060 1.56529 1.26491 1.18608 0.82694 0.79938 0.84647 1.90747 1.56958 1.45619 1.51175 1.21111 0.96458 1.02600 0.98328 1.23864 0.96048 0.95967 0.98019 1.21713 0.92227 0.92493 0.92326 1.88096 1.22993 1.35975 1.83636 1.22825 0.84686 0.99570 0.94938 1.21131 0.97195 1.00774 0.96161 1.22420 1.06225 0.91362 0.98357 1.22918 0.94332 1.02079 1.01791 1.23076 0.95786 0.96175 1.03099 0.88790 0.90344 0.92833 0.96061 0.95099 0.79959 0.93365 0.75472 0.86454 0.84971 0.89833 0.85440 0.92675 0.87834 0.89004 0.88209 0.89800 0.89791 0.87302 0.87280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 8.18 71.98 0.59 -2.94 16 2 C 0.20 6.18 0.55 3.61 0.00 6.18 16 3 C 0.14 6.10 4.83 86.38 0.42 6.52 16 4 N -0.74 -36.34 4.98 -343.45 -1.71 -38.05 16 5 C -0.23 -14.11 10.47 84.03 0.88 -13.23 16 6 H 0.04 2.90 8.06 -2.91 -0.02 2.87 16 7 C -0.07 -4.18 5.50 84.86 0.47 -3.71 16 8 N -0.99 -65.50 13.97 21.65 0.30 -65.19 16 9 Si 0.96 45.59 27.74 68.60 1.90 47.49 16 10 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 11 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 12 H -0.25 -10.32 6.52 99.48 0.65 -9.67 16 13 N -0.71 -19.85 4.15 -426.47 -1.77 -21.62 16 14 C 0.55 18.13 4.74 86.57 0.41 18.54 16 15 O -0.56 -23.46 12.32 -4.05 -0.05 -23.51 16 16 C -0.18 -4.82 5.86 -18.59 -0.11 -4.93 16 17 C -0.12 -3.02 9.58 24.59 0.24 -2.79 16 18 C 0.09 1.65 7.04 71.10 0.50 2.15 16 19 O -0.39 -7.76 10.83 -148.98 -1.61 -9.38 16 20 C 0.06 0.94 6.88 72.02 0.50 1.43 16 21 C -0.12 -2.13 5.33 29.79 0.16 -1.97 16 22 C -0.16 -4.42 4.86 -10.79 -0.05 -4.47 16 23 C -0.17 -4.44 8.52 30.62 0.26 -4.18 16 24 C -0.14 -2.76 9.68 30.62 0.30 -2.46 16 25 H 0.09 1.58 6.89 -2.39 -0.02 1.56 16 26 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 27 H 0.05 1.44 6.86 -2.39 -0.02 1.43 16 28 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.03 1.56 5.72 -2.39 -0.01 1.54 16 30 H 0.37 16.42 4.21 -92.71 -0.39 16.03 16 31 H 0.26 16.15 8.31 -92.71 -0.77 15.38 16 32 H 0.41 8.83 6.75 -92.71 -0.63 8.20 16 33 H 0.12 3.39 7.29 -2.91 -0.02 3.37 16 34 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 37 H 0.05 0.97 8.09 -2.39 -0.02 0.95 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.09 1.56 7.24 -2.39 -0.02 1.55 16 40 H 0.10 2.86 8.06 -2.39 -0.02 2.84 16 41 H 0.08 2.29 5.16 -2.39 -0.01 2.28 16 42 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 43 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 44 H 0.11 1.70 7.17 -2.39 -0.02 1.69 16 Total: -1.00 -79.91 341.72 1.56 -78.35 By element: Atomic # 1 Polarization: 37.82 SS G_CDS: -0.06 Total: 37.76 kcal Atomic # 6 Polarization: -10.40 SS G_CDS: 4.55 Total: -5.85 kcal Atomic # 7 Polarization: -121.68 SS G_CDS: -3.18 Total: -124.86 kcal Atomic # 8 Polarization: -31.22 SS G_CDS: -1.66 Total: -32.88 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.90 Total: 47.49 kcal Total: -79.91 1.56 -78.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753517223.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.417 kcal (2) G-P(sol) polarization free energy of solvation -79.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds