Wall clock time and date at job start Tue Mar 31 2020 06:58:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42897 * 109.47138 * 331.96595 * 3 2 1 5 5 C 1.42904 * 114.00144 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47136 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.46982 * 180.02562 * 6 5 4 8 8 O 1.21286 * 120.00153 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00297 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00252 * 185.12397 * 9 7 6 11 11 C 1.53007 * 109.47256 * 298.24036 * 10 9 7 12 12 C 1.52998 * 109.47084 * 58.24140 * 10 9 7 13 13 N 1.46494 * 109.47223 * 59.99956 * 12 10 9 14 14 C 1.36938 * 120.00039 * 179.97438 * 13 12 10 15 15 H 1.07996 * 119.99936 * 0.02562 * 14 13 12 16 16 C 1.38819 * 119.99762 * 179.97438 * 14 13 12 17 17 N 1.31617 * 120.00137 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99756 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47171 * 60.00300 * 18 16 14 20 20 H 1.48501 * 109.47145 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47256 * 300.00344 * 18 16 14 22 22 C 1.52995 * 109.47073 * 178.24230 * 10 9 7 23 23 C 1.53000 * 117.49829 * 132.09347 * 22 10 9 24 24 C 1.52998 * 117.50270 * 63.43472 * 22 10 9 25 25 H 4.38448 * 5.44449 * 180.02562 * 4 1 2 26 26 H 1.09000 * 109.46902 * 211.97292 * 3 2 1 27 27 H 1.08995 * 109.47280 * 91.96976 * 3 2 1 28 28 H 1.09005 * 109.46671 * 60.00059 * 5 4 3 29 29 H 1.08994 * 109.47283 * 300.00368 * 5 4 3 30 30 H 1.08993 * 109.47089 * 60.00655 * 6 5 4 31 31 H 1.09000 * 109.47063 * 299.99836 * 6 5 4 32 32 H 0.96996 * 119.99515 * 5.12907 * 9 7 6 33 33 H 1.09001 * 109.46988 * 300.00216 * 11 10 9 34 34 H 1.08997 * 109.47303 * 179.97438 * 11 10 9 35 35 H 1.09004 * 109.46816 * 60.00060 * 11 10 9 36 36 H 1.08997 * 109.47250 * 180.02562 * 12 10 9 37 37 H 1.08998 * 109.47320 * 299.99660 * 12 10 9 38 38 H 0.97002 * 120.00037 * 359.97438 * 13 12 10 39 39 H 0.97000 * 119.99845 * 180.02562 * 17 16 14 40 40 H 1.09001 * 115.54848 * 277.76138 * 22 10 9 41 41 H 1.08996 * 117.50453 * 0.02562 * 23 22 10 42 42 H 1.09000 * 117.49801 * 145.02120 * 23 22 10 43 43 H 1.09000 * 117.50110 * 214.98522 * 24 22 10 44 44 H 1.09007 * 117.49577 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1228 -1.1883 0.6332 5 6 4.5475 -1.2870 0.6868 6 6 4.9425 -2.5920 1.3809 7 6 6.4449 -2.6958 1.4380 8 8 7.1320 -1.8131 0.9691 9 7 7.0250 -3.7694 2.0100 10 6 8.4808 -3.8190 2.1665 11 6 9.1438 -3.7731 0.7882 12 6 8.9456 -2.6205 2.9961 13 7 8.3109 -2.6644 4.3157 14 6 8.5784 -1.6873 5.2371 15 1 9.2571 -0.8841 4.9907 16 6 7.9765 -1.7287 6.4873 17 7 7.1490 -2.7072 6.7872 18 14 8.3421 -0.3962 7.7444 19 1 7.9409 0.9246 7.1966 20 1 7.5793 -0.6675 8.9893 21 1 9.7960 -0.3859 8.0463 22 6 8.8733 -5.1151 2.8783 23 6 10.0108 -5.9383 2.2705 24 6 8.5662 -6.4336 2.1655 25 1 -1.0499 -0.0004 0.0000 26 1 3.0089 0.8726 0.5442 27 1 3.0093 0.0361 -1.0270 28 1 4.9494 -0.4417 1.2454 29 1 4.9506 -1.2780 -0.3258 30 1 4.5407 -3.4370 0.8219 31 1 4.5394 -2.6014 2.3936 32 1 6.4786 -4.5093 2.3180 33 1 8.8126 -4.6270 0.1972 34 1 10.2269 -3.8095 0.9047 35 1 8.8641 -2.8497 0.2811 36 1 10.0288 -2.6571 3.1122 37 1 8.6660 -1.6971 2.4890 38 1 7.7010 -3.3856 4.5368 39 1 6.7282 -2.7359 7.6607 40 1 8.7888 -5.0988 3.9649 41 1 10.4797 -5.5563 1.3637 42 1 10.6742 -6.4640 2.9572 43 1 8.2799 -7.2848 2.7831 44 1 8.0841 -6.3776 1.1894 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753518764.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:41 Heat of formation + Delta-G solvation = 13.377607 kcal Electronic energy + Delta-G solvation = -23924.688071 eV Core-core repulsion = 20459.374817 eV Total energy + Delta-G solvation = -3465.313254 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.10648 -38.35604 -37.57600 -34.65616 -33.57877 -33.42185 -31.85033 -30.74139 -29.47759 -27.05754 -25.85123 -24.15872 -23.00088 -22.30308 -22.04309 -19.93567 -18.78035 -18.56928 -17.36373 -17.12689 -16.39980 -16.31950 -15.56500 -15.20113 -14.95741 -14.90660 -14.44801 -13.99354 -13.50109 -13.37659 -13.06362 -12.72188 -12.59445 -12.29899 -12.07415 -11.95657 -11.62444 -11.45578 -11.31741 -11.03854 -10.80869 -10.78091 -10.72084 -10.68864 -10.55103 -10.16607 -10.09783 -9.80699 -9.64516 -9.62579 -9.28246 -8.76421 -8.55438 -6.82318 -5.71760 -2.97964 2.31581 2.62522 3.01779 3.32939 3.47646 3.51711 3.53013 3.84852 4.14601 4.46234 4.64382 4.80528 4.92977 5.08370 5.09894 5.14698 5.19878 5.26036 5.29273 5.40452 5.48801 5.57817 5.64096 5.71414 5.74411 5.81195 5.87132 5.95805 5.99452 6.07712 6.23787 6.27023 6.29621 6.47166 6.59679 6.72313 6.92373 7.04226 7.14092 7.37912 7.75961 7.93897 8.47946 8.63160 9.59326 10.17521 10.53562 11.51312 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.009398 B = 0.004722 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.713154 B = 5928.224228 C = 8175.799922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.188 4.188 3 C 0.172 3.828 4 O -0.386 6.386 5 C 0.080 3.920 6 C -0.140 4.140 7 C 0.529 3.471 8 O -0.541 6.541 9 N -0.709 5.709 10 C 0.202 3.798 11 C -0.163 4.163 12 C 0.144 3.856 13 N -0.726 5.726 14 C -0.232 4.232 15 H 0.068 0.932 16 C -0.015 4.015 17 N -0.936 5.936 18 Si 0.905 3.095 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.287 1.287 22 C -0.150 4.150 23 C -0.173 4.173 24 C -0.183 4.183 25 H 0.221 0.779 26 H 0.077 0.923 27 H 0.074 0.926 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.106 0.894 32 H 0.398 0.602 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.023 0.977 37 H 0.045 0.955 38 H 0.382 0.618 39 H 0.254 0.746 40 H 0.122 0.878 41 H 0.099 0.901 42 H 0.092 0.908 43 H 0.092 0.908 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.355 -3.789 -15.241 16.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.188 4.188 3 C 0.097 3.903 4 O -0.306 6.306 5 C 0.004 3.996 6 C -0.180 4.180 7 C 0.315 3.685 8 O -0.418 6.418 9 N -0.359 5.359 10 C 0.117 3.883 11 C -0.221 4.221 12 C 0.015 3.985 13 N -0.370 5.370 14 C -0.363 4.363 15 H 0.086 0.914 16 C -0.210 4.210 17 N -0.586 5.586 18 Si 0.736 3.264 19 H -0.214 1.214 20 H -0.218 1.218 21 H -0.214 1.214 22 C -0.168 4.168 23 C -0.211 4.211 24 C -0.220 4.220 25 H 0.238 0.762 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.232 0.768 33 H 0.070 0.930 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.041 0.959 37 H 0.063 0.937 38 H 0.216 0.784 39 H 0.063 0.937 40 H 0.140 0.860 41 H 0.117 0.883 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -4.889 -3.136 -15.401 16.460 hybrid contribution -0.354 0.258 1.104 1.188 sum -5.243 -2.878 -14.297 15.497 Atomic orbital electron populations 1.24937 0.95864 0.98650 1.00463 1.22633 0.93974 1.01492 1.00663 1.19052 0.84496 0.88870 0.97901 1.87868 1.22142 1.40492 1.80138 1.22165 0.79257 0.97813 1.00370 1.21458 0.93381 0.98915 1.04281 1.20064 0.89470 0.81637 0.77283 1.90628 1.64967 1.39253 1.46991 1.45879 1.07687 1.20686 1.61667 1.20020 0.79218 0.94607 0.94458 1.22295 1.00416 1.03002 0.96398 1.21050 0.95494 0.95088 0.86826 1.42236 1.54308 1.30496 1.09997 1.19193 1.21337 1.02749 0.93054 0.91444 1.24669 0.99996 0.98567 0.97785 1.69633 1.33916 1.33030 1.21976 0.86296 0.77490 0.81541 0.81057 1.21400 1.21774 1.21383 1.22579 1.03559 0.90132 1.00549 1.23057 0.91352 1.03526 1.03131 1.22945 0.99156 0.97835 1.02072 0.76218 0.90547 0.90787 0.91706 0.92299 0.88634 0.87603 0.76785 0.93044 0.91747 0.90238 0.95898 0.93710 0.78382 0.93651 0.85993 0.88277 0.88927 0.88945 0.89036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 19.25 29.55 0.57 -1.25 16 2 C -0.19 -2.22 13.73 -37.12 -0.51 -2.73 16 3 C 0.17 1.94 6.41 34.37 0.22 2.16 16 4 O -0.39 -5.31 10.30 -35.23 -0.36 -5.67 16 5 C 0.08 1.08 5.23 37.16 0.19 1.28 16 6 C -0.14 -1.90 6.07 -27.88 -0.17 -2.06 16 7 C 0.53 8.60 7.23 -10.99 -0.08 8.52 16 8 O -0.54 -10.28 12.22 5.55 0.07 -10.21 16 9 N -0.71 -10.84 4.73 -47.61 -0.23 -11.07 16 10 C 0.20 3.30 0.54 -131.82 -0.07 3.23 16 11 C -0.16 -2.34 7.06 37.16 0.26 -2.08 16 12 C 0.14 3.05 4.94 -4.05 -0.02 3.03 16 13 N -0.73 -18.28 5.03 -59.91 -0.30 -18.58 16 14 C -0.23 -6.60 9.99 -15.06 -0.15 -6.75 16 15 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 16 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 17 N -0.94 -28.09 13.06 55.49 0.72 -27.36 16 18 Si 0.90 22.83 29.55 -169.99 -5.02 17.81 16 19 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 20 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 C -0.15 -2.25 4.86 -90.62 -0.44 -2.69 16 23 C -0.17 -2.16 9.63 -26.70 -0.26 -2.42 16 24 C -0.18 -2.16 9.72 -26.70 -0.26 -2.42 16 25 H 0.22 1.31 7.80 -54.10 -0.42 0.88 16 26 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 27 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 29 H 0.06 0.74 8.10 -51.93 -0.42 0.32 16 30 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.11 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.40 5.30 8.38 -40.82 -0.34 4.96 16 33 H 0.05 0.65 7.00 -51.93 -0.36 0.28 16 34 H 0.06 0.86 6.81 -51.93 -0.35 0.51 16 35 H 0.08 1.29 6.13 -51.93 -0.32 0.97 16 36 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.05 1.05 6.22 -51.93 -0.32 0.73 16 38 H 0.38 9.86 6.63 -40.82 -0.27 9.59 16 39 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.12 2.22 7.09 -51.93 -0.37 1.86 16 41 H 0.10 1.15 5.88 -51.93 -0.31 0.84 16 42 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 43 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 44 H 0.09 1.00 7.39 -51.93 -0.38 0.61 16 LS Contribution 365.03 15.07 5.50 5.50 Total: -1.00 -33.23 365.03 -7.22 -40.45 By element: Atomic # 1 Polarization: 20.63 SS G_CDS: -6.80 Total: 13.84 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -0.81 Total: -4.71 kcal Atomic # 7 Polarization: -57.21 SS G_CDS: 0.20 Total: -57.01 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.30 Total: -15.88 kcal Atomic # 14 Polarization: 22.83 SS G_CDS: -5.02 Total: 17.81 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.23 -7.22 -40.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753518764.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.832 kcal (2) G-P(sol) polarization free energy of solvation -33.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds