Wall clock time and date at job start Tue Mar 31 2020 06:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42897 * 109.47138 * 331.96595 * 3 2 1 5 5 C 1.42904 * 114.00144 * 180.02562 * 4 3 2 6 6 C 1.53001 * 109.47136 * 180.02562 * 5 4 3 7 7 C 1.50699 * 109.46982 * 180.02562 * 6 5 4 8 8 O 1.21286 * 120.00153 * 359.97438 * 7 6 5 9 9 N 1.34777 * 120.00297 * 179.97438 * 7 6 5 10 10 C 1.46497 * 120.00252 * 185.12397 * 9 7 6 11 11 C 1.53007 * 109.47256 * 298.24036 * 10 9 7 12 12 C 1.52998 * 109.47084 * 58.24140 * 10 9 7 13 13 N 1.46494 * 109.47223 * 59.99956 * 12 10 9 14 14 C 1.36938 * 120.00039 * 179.97438 * 13 12 10 15 15 H 1.07996 * 119.99936 * 0.02562 * 14 13 12 16 16 C 1.38819 * 119.99762 * 179.97438 * 14 13 12 17 17 N 1.31617 * 120.00137 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99756 * 179.97438 * 16 14 13 19 19 H 1.48507 * 109.47171 * 60.00300 * 18 16 14 20 20 H 1.48501 * 109.47145 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47256 * 300.00344 * 18 16 14 22 22 C 1.52995 * 109.47073 * 178.24230 * 10 9 7 23 23 C 1.53000 * 117.49829 * 132.09347 * 22 10 9 24 24 C 1.52998 * 117.50270 * 63.43472 * 22 10 9 25 25 H 4.38448 * 5.44449 * 180.02562 * 4 1 2 26 26 H 1.09000 * 109.46902 * 211.97292 * 3 2 1 27 27 H 1.08995 * 109.47280 * 91.96976 * 3 2 1 28 28 H 1.09005 * 109.46671 * 60.00059 * 5 4 3 29 29 H 1.08994 * 109.47283 * 300.00368 * 5 4 3 30 30 H 1.08993 * 109.47089 * 60.00655 * 6 5 4 31 31 H 1.09000 * 109.47063 * 299.99836 * 6 5 4 32 32 H 0.96996 * 119.99515 * 5.12907 * 9 7 6 33 33 H 1.09001 * 109.46988 * 300.00216 * 11 10 9 34 34 H 1.08997 * 109.47303 * 179.97438 * 11 10 9 35 35 H 1.09004 * 109.46816 * 60.00060 * 11 10 9 36 36 H 1.08997 * 109.47250 * 180.02562 * 12 10 9 37 37 H 1.08998 * 109.47320 * 299.99660 * 12 10 9 38 38 H 0.97002 * 120.00037 * 359.97438 * 13 12 10 39 39 H 0.97000 * 119.99845 * 180.02562 * 17 16 14 40 40 H 1.09001 * 115.54848 * 277.76138 * 22 10 9 41 41 H 1.08996 * 117.50453 * 0.02562 * 23 22 10 42 42 H 1.09000 * 117.49801 * 145.02120 * 23 22 10 43 43 H 1.09000 * 117.50110 * 214.98522 * 24 22 10 44 44 H 1.09007 * 117.49577 * 359.97438 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1228 -1.1883 0.6332 5 6 4.5475 -1.2870 0.6868 6 6 4.9425 -2.5920 1.3809 7 6 6.4449 -2.6958 1.4380 8 8 7.1320 -1.8131 0.9691 9 7 7.0250 -3.7694 2.0100 10 6 8.4808 -3.8190 2.1665 11 6 9.1438 -3.7731 0.7882 12 6 8.9456 -2.6205 2.9961 13 7 8.3109 -2.6644 4.3157 14 6 8.5784 -1.6873 5.2371 15 1 9.2571 -0.8841 4.9907 16 6 7.9765 -1.7287 6.4873 17 7 7.1490 -2.7072 6.7872 18 14 8.3421 -0.3962 7.7444 19 1 7.9409 0.9246 7.1966 20 1 7.5793 -0.6675 8.9893 21 1 9.7960 -0.3859 8.0463 22 6 8.8733 -5.1151 2.8783 23 6 10.0108 -5.9383 2.2705 24 6 8.5662 -6.4336 2.1655 25 1 -1.0499 -0.0004 0.0000 26 1 3.0089 0.8726 0.5442 27 1 3.0093 0.0361 -1.0270 28 1 4.9494 -0.4417 1.2454 29 1 4.9506 -1.2780 -0.3258 30 1 4.5407 -3.4370 0.8219 31 1 4.5394 -2.6014 2.3936 32 1 6.4786 -4.5093 2.3180 33 1 8.8126 -4.6270 0.1972 34 1 10.2269 -3.8095 0.9047 35 1 8.8641 -2.8497 0.2811 36 1 10.0288 -2.6571 3.1122 37 1 8.6660 -1.6971 2.4890 38 1 7.7010 -3.3856 4.5368 39 1 6.7282 -2.7359 7.6607 40 1 8.7888 -5.0988 3.9649 41 1 10.4797 -5.5563 1.3637 42 1 10.6742 -6.4640 2.9572 43 1 8.2799 -7.2848 2.7831 44 1 8.0841 -6.3776 1.1894 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753518764.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:40 Heat of formation + Delta-G solvation = -8.995975 kcal Electronic energy + Delta-G solvation = -23925.658262 eV Core-core repulsion = 20459.374817 eV Total energy + Delta-G solvation = -3466.283445 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.40272 -39.44557 -38.72109 -36.36258 -34.96278 -34.45818 -33.28495 -32.36707 -30.85843 -27.96020 -27.55928 -25.52734 -24.45725 -23.86301 -23.10621 -21.13959 -20.12728 -19.40784 -19.21460 -18.47588 -17.44315 -17.39453 -16.95987 -16.57040 -16.29461 -16.06010 -15.85761 -15.43569 -15.03058 -14.83969 -14.51497 -14.04920 -13.79290 -13.67536 -13.54436 -13.17145 -13.07247 -12.78811 -12.66860 -12.48502 -12.41012 -12.23495 -12.03914 -12.00623 -11.74811 -11.55232 -11.46162 -11.22316 -11.05382 -10.90290 -10.58670 -10.50852 -9.89995 -8.93953 -7.94905 -5.20929 1.43543 1.44378 1.46882 1.52974 1.73784 1.81205 2.19521 2.55293 2.90885 3.13037 3.37832 3.60015 3.64470 3.79349 3.91896 3.97875 4.05335 4.18305 4.22407 4.26462 4.30676 4.42718 4.48574 4.50736 4.70115 4.79751 4.80718 4.85974 4.89828 4.94152 5.01442 5.02120 5.04790 5.15030 5.31961 5.34369 5.45896 5.50169 5.72707 6.06011 6.27555 6.58621 6.70597 7.34991 7.37708 8.10375 8.38663 9.27738 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.009398 B = 0.004722 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2978.713154 B = 5928.224228 C = 8175.799922 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.241 4.241 3 C 0.166 3.834 4 O -0.401 6.401 5 C 0.086 3.914 6 C -0.133 4.133 7 C 0.522 3.478 8 O -0.572 6.572 9 N -0.704 5.704 10 C 0.211 3.789 11 C -0.153 4.153 12 C 0.145 3.855 13 N -0.729 5.729 14 C -0.246 4.246 15 H 0.063 0.937 16 C -0.067 4.067 17 N -0.962 5.962 18 Si 0.967 3.033 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.279 1.279 22 C -0.176 4.176 23 C -0.164 4.164 24 C -0.155 4.155 25 H 0.257 0.743 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.127 0.873 31 H 0.096 0.904 32 H 0.409 0.591 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.017 0.983 37 H 0.020 0.980 38 H 0.378 0.622 39 H 0.251 0.749 40 H 0.085 0.915 41 H 0.113 0.887 42 H 0.097 0.903 43 H 0.103 0.897 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.915 -4.844 -16.403 18.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.241 4.241 3 C 0.090 3.910 4 O -0.321 6.321 5 C 0.010 3.990 6 C -0.173 4.173 7 C 0.310 3.690 8 O -0.452 6.452 9 N -0.354 5.354 10 C 0.125 3.875 11 C -0.211 4.211 12 C 0.017 3.983 13 N -0.372 5.372 14 C -0.378 4.378 15 H 0.081 0.919 16 C -0.260 4.260 17 N -0.613 5.613 18 Si 0.796 3.204 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.205 1.205 22 C -0.195 4.195 23 C -0.202 4.202 24 C -0.192 4.192 25 H 0.273 0.727 26 H 0.097 0.903 27 H 0.111 0.889 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.145 0.855 31 H 0.114 0.886 32 H 0.244 0.756 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.035 0.965 37 H 0.038 0.962 38 H 0.211 0.789 39 H 0.060 0.940 40 H 0.103 0.897 41 H 0.131 0.869 42 H 0.116 0.884 43 H 0.121 0.879 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.443 -4.205 -16.581 17.951 hybrid contribution -0.206 0.610 1.446 1.583 sum -5.649 -3.595 -15.134 16.549 Atomic orbital electron populations 1.25873 0.96761 0.96463 0.98428 1.23066 0.94819 1.03550 1.02648 1.19233 0.84831 0.88069 0.98821 1.87827 1.21865 1.41764 1.80693 1.22046 0.79445 0.96977 1.00561 1.21415 0.91342 1.00276 1.04240 1.20559 0.90535 0.81245 0.76697 1.90616 1.65899 1.40273 1.48403 1.45875 1.07563 1.20908 1.61085 1.19821 0.79837 0.93036 0.94770 1.22207 1.00867 1.03130 0.94919 1.21091 0.94853 0.96698 0.85646 1.42295 1.54318 1.29601 1.10997 1.19513 1.21052 1.03232 0.94018 0.91907 1.25401 1.00258 1.00783 0.99533 1.69771 1.34843 1.34536 1.22165 0.85317 0.77543 0.78988 0.78549 1.21063 1.21696 1.20511 1.22260 1.07441 0.91196 0.98606 1.23187 0.91623 1.02106 1.03244 1.23034 0.98426 0.95511 1.02186 0.72726 0.90259 0.88935 0.93809 0.91254 0.85498 0.88559 0.75557 0.90401 0.90752 0.92176 0.96526 0.96186 0.78913 0.94015 0.89708 0.86900 0.88439 0.87881 0.87252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.87 19.25 74.32 1.43 -1.44 16 2 C -0.24 -5.55 13.73 31.13 0.43 -5.12 16 3 C 0.17 3.72 6.41 70.18 0.45 4.17 16 4 O -0.40 -10.98 10.30 -148.98 -1.53 -12.51 16 5 C 0.09 2.34 5.23 71.98 0.38 2.72 16 6 C -0.13 -3.54 6.07 29.85 0.18 -3.36 16 7 C 0.52 17.00 7.23 87.66 0.63 17.64 16 8 O -0.57 -22.20 12.22 -3.05 -0.04 -22.24 16 9 N -0.70 -21.23 4.73 -422.92 -2.00 -23.23 16 10 C 0.21 6.82 0.54 3.60 0.00 6.82 16 11 C -0.15 -4.18 7.06 71.98 0.51 -3.67 16 12 C 0.14 6.32 4.94 86.38 0.43 6.75 16 13 N -0.73 -37.83 5.03 -343.47 -1.73 -39.56 16 14 C -0.25 -14.34 9.99 84.03 0.84 -13.50 16 15 H 0.06 3.63 7.83 -2.91 -0.02 3.61 16 16 C -0.07 -3.92 5.50 84.86 0.47 -3.46 16 17 N -0.96 -58.64 13.06 21.65 0.28 -58.36 16 18 Si 0.97 47.42 29.55 68.60 2.03 49.45 16 19 H -0.28 -13.70 7.11 99.48 0.71 -12.99 16 20 H -0.29 -14.15 7.11 99.48 0.71 -13.44 16 21 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 22 C -0.18 -5.16 4.86 -10.80 -0.05 -5.21 16 23 C -0.16 -3.70 9.63 30.62 0.29 -3.40 16 24 C -0.15 -3.20 9.72 30.62 0.30 -2.90 16 25 H 0.26 2.22 7.80 -4.42 -0.03 2.18 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.04 1.35 8.10 -2.38 -0.02 1.33 16 29 H 0.07 1.72 8.10 -2.39 -0.02 1.70 16 30 H 0.13 2.55 8.14 -2.39 -0.02 2.53 16 31 H 0.10 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.41 10.49 8.38 -92.71 -0.78 9.72 16 33 H 0.08 1.72 7.00 -2.39 -0.02 1.70 16 34 H 0.07 1.86 6.81 -2.39 -0.02 1.84 16 35 H 0.06 1.91 6.13 -2.39 -0.01 1.90 16 36 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.02 0.99 6.22 -2.39 -0.01 0.97 16 38 H 0.38 20.10 6.63 -92.71 -0.61 19.49 16 39 H 0.25 14.88 8.31 -92.71 -0.77 14.10 16 40 H 0.08 3.17 7.09 -2.39 -0.02 3.15 16 41 H 0.11 2.24 5.88 -2.39 -0.01 2.23 16 42 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.10 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.11 1.92 7.39 -2.38 -0.02 1.90 16 Total: -1.00 -73.12 365.03 2.91 -70.21 By element: Atomic # 1 Polarization: 40.59 SS G_CDS: -0.38 Total: 40.21 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: 6.28 Total: -3.97 kcal Atomic # 7 Polarization: -117.71 SS G_CDS: -3.44 Total: -121.15 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -1.57 Total: -34.76 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -73.12 2.91 -70.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753518764.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.219 kcal (2) G-P(sol) polarization free energy of solvation -73.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds