Wall clock time and date at job start Tue Mar 31 2020 06:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 O 1.42901 * 109.47013 * 97.20946 * 3 2 1 5 5 C 1.42898 * 113.99758 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46898 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47045 * 179.97438 * 6 5 4 8 8 O 1.21290 * 119.99834 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00296 * 179.97438 * 7 6 5 10 10 C 1.46494 * 120.00318 * 185.19000 * 9 7 6 11 11 C 1.53005 * 109.47145 * 183.95049 * 10 9 7 12 12 C 1.52999 * 109.46969 * 63.95184 * 10 9 7 13 13 N 1.46500 * 109.47030 * 59.99927 * 12 10 9 14 14 C 1.36937 * 120.00138 * 180.02562 * 13 12 10 15 15 H 1.08003 * 120.00269 * 359.97438 * 14 13 12 16 16 C 1.38808 * 120.00284 * 180.02562 * 14 13 12 17 17 N 1.31617 * 119.99832 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00092 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47180 * 59.99840 * 18 16 14 20 20 H 1.48500 * 109.46983 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47249 * 299.99263 * 18 16 14 22 22 C 1.52998 * 109.47600 * 303.95445 * 10 9 7 23 23 C 1.53001 * 117.51697 * 228.44987 * 22 10 9 24 24 C 1.53005 * 117.49462 * 297.07847 * 22 10 9 25 25 H 4.38446 * 5.44385 * 179.97438 * 4 1 2 26 26 H 1.08998 * 109.46888 * 337.21270 * 3 2 1 27 27 H 1.08996 * 109.46670 * 217.21114 * 3 2 1 28 28 H 1.08997 * 109.47785 * 59.99607 * 5 4 3 29 29 H 1.09006 * 109.46807 * 299.99444 * 5 4 3 30 30 H 1.09002 * 109.47185 * 59.99990 * 6 5 4 31 31 H 1.08998 * 109.46973 * 299.99656 * 6 5 4 32 32 H 0.97001 * 119.99979 * 5.20019 * 9 7 6 33 33 H 1.09003 * 109.46706 * 180.02562 * 11 10 9 34 34 H 1.09000 * 109.47099 * 299.99868 * 11 10 9 35 35 H 1.08993 * 109.46980 * 60.00226 * 11 10 9 36 36 H 1.09004 * 109.47388 * 179.97438 * 12 10 9 37 37 H 1.08993 * 109.47268 * 299.99898 * 12 10 9 38 38 H 0.96996 * 120.00435 * 359.97438 * 13 12 10 39 39 H 0.97008 * 119.99757 * 180.02562 * 17 16 14 40 40 H 1.08999 * 115.55380 * 82.74298 * 22 10 9 41 41 H 1.09002 * 117.50163 * 214.96480 * 23 22 10 42 42 H 1.08997 * 117.50077 * 359.97438 * 23 22 10 43 43 H 1.08998 * 117.49808 * 359.97048 * 24 22 10 44 44 H 1.08998 * 117.49901 * 144.97755 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1223 0.1700 -1.3366 5 6 4.5468 0.1842 -1.4486 6 6 4.9412 0.3706 -2.9152 7 6 6.4435 0.3862 -3.0332 8 8 7.1310 0.2611 -2.0419 9 7 7.0231 0.5392 -4.2403 10 6 8.4788 0.4408 -4.3717 11 6 8.8826 0.7487 -5.8150 12 6 8.9292 -0.9752 -4.0071 13 7 8.2913 -1.9378 -4.9087 14 6 8.5456 -3.2764 -4.7720 15 1 9.2167 -3.6226 -3.9998 16 6 7.9416 -4.1884 -5.6265 17 7 7.1241 -3.7667 -6.5678 18 14 8.2891 -6.0144 -5.4405 19 1 7.8740 -6.4619 -4.0868 20 1 7.5268 -6.7704 -6.4665 21 1 9.7421 -6.2626 -5.6201 22 6 9.1451 1.4460 -3.4302 23 6 10.2439 2.3380 -4.0114 24 6 8.8740 2.9316 -3.6766 25 1 -1.0500 -0.0002 0.0001 26 1 3.0098 -0.9466 0.3980 27 1 3.0089 0.8193 0.6215 28 1 4.9497 -0.7594 -1.0807 29 1 4.9495 1.0065 -0.8571 30 1 4.5384 1.3144 -3.2826 31 1 4.5384 -0.4514 -3.5070 32 1 6.4763 0.7146 -5.0221 33 1 9.9657 0.6750 -5.9128 34 1 8.4080 0.0325 -6.4857 35 1 8.5617 1.7575 -6.0747 36 1 10.0123 -1.0486 -4.1053 37 1 8.6416 -1.1946 -2.9790 38 1 7.6882 -1.6271 -5.6019 39 1 6.7017 -4.4041 -7.1647 40 1 9.2562 1.1195 -2.3962 41 1 11.0781 2.5983 -3.3598 42 1 10.4927 2.2084 -5.0647 43 1 8.2215 3.1927 -4.5098 44 1 8.8067 3.5823 -2.8048 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753518765.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:43 Heat of formation + Delta-G solvation = 12.889041 kcal Electronic energy + Delta-G solvation = -23917.685675 eV Core-core repulsion = 20452.351236 eV Total energy + Delta-G solvation = -3465.334439 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.09096 -38.33971 -37.44953 -34.95603 -33.58397 -33.40353 -31.75554 -30.80210 -29.23712 -27.08585 -26.14138 -24.08556 -23.43387 -22.21889 -21.36732 -20.30200 -18.69988 -18.60438 -17.27349 -17.23865 -16.41554 -16.09287 -15.81775 -15.28600 -14.96482 -14.86083 -14.39564 -14.07232 -13.47055 -13.35751 -13.05319 -12.79515 -12.74039 -12.26776 -12.08153 -11.87806 -11.55621 -11.46112 -11.25240 -11.05013 -10.88057 -10.78558 -10.69950 -10.60003 -10.56392 -10.25113 -10.15413 -9.88504 -9.65033 -9.62679 -9.26433 -8.80190 -8.55267 -6.85341 -5.73656 -3.00152 2.30694 2.61525 3.04802 3.33174 3.46799 3.50917 3.52148 3.84688 4.16090 4.45766 4.60130 4.81231 4.94245 5.07818 5.10827 5.13364 5.18177 5.24971 5.35123 5.39893 5.48262 5.60488 5.62808 5.68699 5.70622 5.77215 5.85118 5.94630 5.96255 6.03178 6.23378 6.24665 6.30318 6.54022 6.58168 6.63679 6.90113 7.03011 7.10764 7.36946 7.74278 7.92773 8.46093 8.64392 9.57471 10.15087 10.50916 11.49432 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.009050 B = 0.004808 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.266333 B = 5822.529843 C = 8345.878382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.188 4.188 3 C 0.173 3.827 4 O -0.386 6.386 5 C 0.081 3.919 6 C -0.141 4.141 7 C 0.530 3.470 8 O -0.541 6.541 9 N -0.709 5.709 10 C 0.201 3.799 11 C -0.155 4.155 12 C 0.147 3.853 13 N -0.726 5.726 14 C -0.233 4.233 15 H 0.068 0.932 16 C -0.014 4.014 17 N -0.936 5.936 18 Si 0.905 3.095 19 H -0.287 1.287 20 H -0.292 1.292 21 H -0.287 1.287 22 C -0.140 4.140 23 C -0.184 4.184 24 C -0.175 4.175 25 H 0.221 0.779 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.095 0.905 31 H 0.105 0.895 32 H 0.398 0.602 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.025 0.975 37 H 0.038 0.962 38 H 0.382 0.618 39 H 0.254 0.746 40 H 0.115 0.885 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.168 14.374 7.757 17.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.188 4.188 3 C 0.097 3.903 4 O -0.306 6.306 5 C 0.004 3.996 6 C -0.181 4.181 7 C 0.316 3.684 8 O -0.418 6.418 9 N -0.359 5.359 10 C 0.115 3.885 11 C -0.212 4.212 12 C 0.018 3.982 13 N -0.371 5.371 14 C -0.364 4.364 15 H 0.086 0.914 16 C -0.210 4.210 17 N -0.585 5.585 18 Si 0.737 3.263 19 H -0.214 1.214 20 H -0.218 1.218 21 H -0.214 1.214 22 C -0.160 4.160 23 C -0.221 4.221 24 C -0.212 4.212 25 H 0.238 0.762 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.114 0.886 31 H 0.123 0.877 32 H 0.232 0.768 33 H 0.093 0.907 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.043 0.957 37 H 0.055 0.945 38 H 0.216 0.784 39 H 0.064 0.936 40 H 0.133 0.867 41 H 0.108 0.892 42 H 0.118 0.882 43 H 0.107 0.893 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.706 14.115 8.355 17.064 hybrid contribution -0.381 -0.974 -0.374 1.111 sum -5.088 13.141 7.981 16.195 Atomic orbital electron populations 1.24943 0.95867 1.01143 0.97920 1.22633 0.93973 1.00366 1.01832 1.19051 0.84508 1.01507 0.85238 1.87871 1.22153 1.94548 1.26059 1.22162 0.79254 1.01977 0.96179 1.21462 0.93478 1.05340 0.97798 1.20037 0.89392 0.75508 0.83420 1.90642 1.65057 1.49405 1.36706 1.45916 1.07541 1.72873 1.09588 1.20016 0.78938 0.95239 0.94274 1.22130 1.02822 1.01147 0.95136 1.20997 0.95577 0.86454 0.95125 1.42254 1.54913 1.02387 1.37560 1.19188 1.21820 0.83140 1.12301 0.91420 1.24672 1.00020 0.97808 0.98482 1.69632 1.34235 1.33265 1.21407 0.86286 0.77488 0.85533 0.77016 1.21384 1.21752 1.21356 1.22594 1.01539 0.90854 1.00986 1.23142 0.92221 1.04637 1.02139 1.22790 0.99287 0.96336 1.02816 0.76209 0.90573 0.90791 0.91797 0.92293 0.88630 0.87651 0.76839 0.90729 0.90621 0.92860 0.95734 0.94452 0.78405 0.93619 0.86683 0.89249 0.88214 0.89250 0.89535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.80 19.25 29.55 0.57 -1.23 16 2 C -0.19 -2.21 13.73 -37.12 -0.51 -2.72 16 3 C 0.17 1.92 6.41 34.37 0.22 2.14 16 4 O -0.39 -5.26 10.30 -35.23 -0.36 -5.62 16 5 C 0.08 1.07 5.23 37.16 0.19 1.27 16 6 C -0.14 -1.88 6.07 -27.88 -0.17 -2.05 16 7 C 0.53 8.52 7.24 -10.99 -0.08 8.44 16 8 O -0.54 -10.14 12.80 5.55 0.07 -10.07 16 9 N -0.71 -10.73 4.71 -47.61 -0.22 -10.96 16 10 C 0.20 3.24 0.54 -131.82 -0.07 3.17 16 11 C -0.15 -2.25 7.04 37.16 0.26 -1.99 16 12 C 0.15 3.08 5.02 -4.04 -0.02 3.06 16 13 N -0.73 -18.11 5.17 -59.91 -0.31 -18.42 16 14 C -0.23 -6.59 9.99 -15.06 -0.15 -6.74 16 15 H 0.07 1.90 7.83 -52.48 -0.41 1.48 16 16 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 17 N -0.94 -27.90 13.06 55.49 0.72 -27.17 16 18 Si 0.91 22.70 29.55 -169.99 -5.02 17.68 16 19 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 20 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 C -0.14 -2.06 4.05 -90.62 -0.37 -2.42 16 23 C -0.18 -2.23 9.62 -26.73 -0.26 -2.49 16 24 C -0.18 -2.13 9.81 -26.73 -0.26 -2.39 16 25 H 0.22 1.29 7.80 -54.09 -0.42 0.87 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.92 8.10 -51.93 -0.42 0.50 16 29 H 0.06 0.73 8.10 -51.93 -0.42 0.31 16 30 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.11 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.40 5.20 8.48 -40.82 -0.35 4.86 16 33 H 0.07 1.06 6.84 -51.93 -0.36 0.71 16 34 H 0.07 1.26 6.86 -51.93 -0.36 0.91 16 35 H 0.05 0.64 7.01 -51.93 -0.36 0.27 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.04 0.88 6.64 -51.93 -0.35 0.53 16 38 H 0.38 9.70 6.35 -40.82 -0.26 9.44 16 39 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 40 H 0.12 1.93 7.18 -51.93 -0.37 1.56 16 41 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.10 1.15 5.87 -51.93 -0.31 0.84 16 43 H 0.09 1.02 7.42 -51.93 -0.39 0.64 16 44 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 366.21 15.07 5.52 5.52 Total: -1.00 -33.16 366.21 -7.20 -40.36 By element: Atomic # 1 Polarization: 20.00 SS G_CDS: -6.86 Total: 13.15 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -0.74 Total: -4.46 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.19 Total: -56.55 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: -0.29 Total: -15.69 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -5.02 Total: 17.68 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.16 -7.20 -40.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753518765.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.245 kcal (2) G-P(sol) polarization free energy of solvation -33.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds