Wall clock time and date at job start Tue Mar 31 2020 06:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 O 1.42901 * 109.47013 * 97.20946 * 3 2 1 5 5 C 1.42898 * 113.99758 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.46898 * 180.02562 * 5 4 3 7 7 C 1.50698 * 109.47045 * 179.97438 * 6 5 4 8 8 O 1.21290 * 119.99834 * 359.97438 * 7 6 5 9 9 N 1.34772 * 120.00296 * 179.97438 * 7 6 5 10 10 C 1.46494 * 120.00318 * 185.19000 * 9 7 6 11 11 C 1.53005 * 109.47145 * 183.95049 * 10 9 7 12 12 C 1.52999 * 109.46969 * 63.95184 * 10 9 7 13 13 N 1.46500 * 109.47030 * 59.99927 * 12 10 9 14 14 C 1.36937 * 120.00138 * 180.02562 * 13 12 10 15 15 H 1.08003 * 120.00269 * 359.97438 * 14 13 12 16 16 C 1.38808 * 120.00284 * 180.02562 * 14 13 12 17 17 N 1.31617 * 119.99832 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 120.00092 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47180 * 59.99840 * 18 16 14 20 20 H 1.48500 * 109.46983 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47249 * 299.99263 * 18 16 14 22 22 C 1.52998 * 109.47600 * 303.95445 * 10 9 7 23 23 C 1.53001 * 117.51697 * 228.44987 * 22 10 9 24 24 C 1.53005 * 117.49462 * 297.07847 * 22 10 9 25 25 H 4.38446 * 5.44385 * 179.97438 * 4 1 2 26 26 H 1.08998 * 109.46888 * 337.21270 * 3 2 1 27 27 H 1.08996 * 109.46670 * 217.21114 * 3 2 1 28 28 H 1.08997 * 109.47785 * 59.99607 * 5 4 3 29 29 H 1.09006 * 109.46807 * 299.99444 * 5 4 3 30 30 H 1.09002 * 109.47185 * 59.99990 * 6 5 4 31 31 H 1.08998 * 109.46973 * 299.99656 * 6 5 4 32 32 H 0.97001 * 119.99979 * 5.20019 * 9 7 6 33 33 H 1.09003 * 109.46706 * 180.02562 * 11 10 9 34 34 H 1.09000 * 109.47099 * 299.99868 * 11 10 9 35 35 H 1.08993 * 109.46980 * 60.00226 * 11 10 9 36 36 H 1.09004 * 109.47388 * 179.97438 * 12 10 9 37 37 H 1.08993 * 109.47268 * 299.99898 * 12 10 9 38 38 H 0.96996 * 120.00435 * 359.97438 * 13 12 10 39 39 H 0.97008 * 119.99757 * 180.02562 * 17 16 14 40 40 H 1.08999 * 115.55380 * 82.74298 * 22 10 9 41 41 H 1.09002 * 117.50163 * 214.96480 * 23 22 10 42 42 H 1.08997 * 117.50077 * 359.97438 * 23 22 10 43 43 H 1.08998 * 117.49808 * 359.97048 * 24 22 10 44 44 H 1.08998 * 117.49901 * 144.97755 * 24 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1223 0.1700 -1.3366 5 6 4.5468 0.1842 -1.4486 6 6 4.9412 0.3706 -2.9152 7 6 6.4435 0.3862 -3.0332 8 8 7.1310 0.2611 -2.0419 9 7 7.0231 0.5392 -4.2403 10 6 8.4788 0.4408 -4.3717 11 6 8.8826 0.7487 -5.8150 12 6 8.9292 -0.9752 -4.0071 13 7 8.2913 -1.9378 -4.9087 14 6 8.5456 -3.2764 -4.7720 15 1 9.2167 -3.6226 -3.9998 16 6 7.9416 -4.1884 -5.6265 17 7 7.1241 -3.7667 -6.5678 18 14 8.2891 -6.0144 -5.4405 19 1 7.8740 -6.4619 -4.0868 20 1 7.5268 -6.7704 -6.4665 21 1 9.7421 -6.2626 -5.6201 22 6 9.1451 1.4460 -3.4302 23 6 10.2439 2.3380 -4.0114 24 6 8.8740 2.9316 -3.6766 25 1 -1.0500 -0.0002 0.0001 26 1 3.0098 -0.9466 0.3980 27 1 3.0089 0.8193 0.6215 28 1 4.9497 -0.7594 -1.0807 29 1 4.9495 1.0065 -0.8571 30 1 4.5384 1.3144 -3.2826 31 1 4.5384 -0.4514 -3.5070 32 1 6.4763 0.7146 -5.0221 33 1 9.9657 0.6750 -5.9128 34 1 8.4080 0.0325 -6.4857 35 1 8.5617 1.7575 -6.0747 36 1 10.0123 -1.0486 -4.1053 37 1 8.6416 -1.1946 -2.9790 38 1 7.6882 -1.6271 -5.6019 39 1 6.7017 -4.4041 -7.1647 40 1 9.2562 1.1195 -2.3962 41 1 11.0781 2.5983 -3.3598 42 1 10.4927 2.2084 -5.0647 43 1 8.2215 3.1927 -4.5098 44 1 8.8067 3.5823 -2.8048 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753518765.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:43 Heat of formation + Delta-G solvation = -9.329029 kcal Electronic energy + Delta-G solvation = -23918.649123 eV Core-core repulsion = 20452.351236 eV Total energy + Delta-G solvation = -3466.297887 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.36902 -39.40372 -38.61062 -36.57911 -34.99607 -34.44620 -33.25921 -32.28460 -30.69532 -27.99352 -27.71425 -25.72892 -24.76670 -23.25667 -22.85793 -21.51244 -20.05630 -19.42686 -19.20653 -18.36275 -17.46327 -17.25679 -16.99000 -16.75840 -16.34854 -15.98141 -15.86208 -15.41554 -15.02184 -14.76291 -14.64567 -14.18975 -13.78767 -13.60003 -13.43989 -13.21652 -12.96912 -12.78902 -12.64422 -12.47801 -12.41324 -12.18561 -12.07931 -11.98434 -11.71238 -11.55581 -11.46475 -11.33902 -11.01618 -10.95075 -10.59067 -10.48117 -9.88204 -8.95559 -7.94857 -5.21156 1.43763 1.45559 1.47804 1.53910 1.77549 1.80923 2.20957 2.55497 2.91719 3.16419 3.38423 3.56336 3.62118 3.81929 3.95893 4.04839 4.07814 4.19778 4.24420 4.27847 4.32290 4.37146 4.42357 4.53138 4.55623 4.78686 4.80440 4.85836 4.91576 4.95519 5.01446 5.01832 5.04787 5.16691 5.32141 5.33649 5.44770 5.47780 5.72323 6.05736 6.27770 6.58356 6.70792 7.35547 7.40526 8.09542 8.38571 9.27652 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.009050 B = 0.004808 C = 0.003354 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3093.266333 B = 5822.529843 C = 8345.878382 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.241 4.241 3 C 0.166 3.834 4 O -0.401 6.401 5 C 0.087 3.913 6 C -0.133 4.133 7 C 0.524 3.476 8 O -0.572 6.572 9 N -0.704 5.704 10 C 0.210 3.790 11 C -0.147 4.147 12 C 0.149 3.851 13 N -0.729 5.729 14 C -0.247 4.247 15 H 0.063 0.937 16 C -0.066 4.066 17 N -0.961 5.961 18 Si 0.967 3.033 19 H -0.285 1.285 20 H -0.291 1.291 21 H -0.279 1.279 22 C -0.164 4.164 23 C -0.170 4.170 24 C -0.157 4.157 25 H 0.257 0.743 26 H 0.080 0.920 27 H 0.092 0.908 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.125 0.875 31 H 0.097 0.903 32 H 0.409 0.591 33 H 0.078 0.922 34 H 0.052 0.948 35 H 0.086 0.914 36 H 0.020 0.980 37 H 0.009 0.991 38 H 0.379 0.621 39 H 0.252 0.748 40 H 0.087 0.913 41 H 0.100 0.900 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.690 15.771 7.448 18.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.241 4.241 3 C 0.091 3.909 4 O -0.322 6.322 5 C 0.010 3.990 6 C -0.173 4.173 7 C 0.311 3.689 8 O -0.451 6.451 9 N -0.355 5.355 10 C 0.124 3.876 11 C -0.204 4.204 12 C 0.022 3.978 13 N -0.373 5.373 14 C -0.379 4.379 15 H 0.081 0.919 16 C -0.258 4.258 17 N -0.612 5.612 18 Si 0.796 3.204 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.205 1.205 22 C -0.183 4.183 23 C -0.207 4.207 24 C -0.194 4.194 25 H 0.273 0.727 26 H 0.098 0.902 27 H 0.110 0.890 28 H 0.063 0.937 29 H 0.086 0.914 30 H 0.143 0.857 31 H 0.115 0.885 32 H 0.245 0.755 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.038 0.962 37 H 0.027 0.973 38 H 0.212 0.788 39 H 0.060 0.940 40 H 0.105 0.895 41 H 0.118 0.882 42 H 0.129 0.871 43 H 0.121 0.879 44 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.223 15.533 8.049 18.257 hybrid contribution -0.247 -1.402 -0.205 1.438 sum -5.470 14.131 7.844 17.063 Atomic orbital electron populations 1.25877 0.96767 0.99154 0.95726 1.23070 0.94823 1.02320 1.03885 1.19234 0.84827 1.02517 0.84363 1.87830 1.21887 1.94643 1.27799 1.22040 0.79430 1.01329 0.96177 1.21418 0.91460 1.06520 0.97919 1.20521 0.90424 0.74785 0.83176 1.90632 1.65988 1.50728 1.37774 1.45901 1.07419 1.72313 1.09867 1.19810 0.79575 0.92496 0.95752 1.22067 1.02884 1.02367 0.93069 1.21024 0.94956 0.88987 0.92881 1.42315 1.54956 1.02064 1.37952 1.19495 1.21541 0.84888 1.12013 0.91939 1.25391 1.00260 1.01699 0.98496 1.69763 1.35102 1.34268 1.22048 0.85322 0.77557 0.80744 0.76793 1.21143 1.21671 1.20496 1.22314 1.04535 0.92132 0.99364 1.23255 0.92335 1.02380 1.02777 1.22868 0.99304 0.93797 1.03396 0.72730 0.90189 0.89001 0.93716 0.91408 0.85669 0.88499 0.75539 0.90347 0.92945 0.89481 0.96244 0.97286 0.78766 0.93958 0.89455 0.88175 0.87120 0.87883 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 19.25 74.32 1.43 -1.42 16 2 C -0.24 -5.51 13.73 31.13 0.43 -5.08 16 3 C 0.17 3.68 6.41 70.18 0.45 4.13 16 4 O -0.40 -10.89 10.30 -148.98 -1.53 -12.43 16 5 C 0.09 2.33 5.23 71.98 0.38 2.71 16 6 C -0.13 -3.53 6.07 29.85 0.18 -3.35 16 7 C 0.52 16.93 7.24 87.66 0.63 17.56 16 8 O -0.57 -22.08 12.80 -3.06 -0.04 -22.12 16 9 N -0.70 -21.04 4.71 -422.93 -1.99 -23.03 16 10 C 0.21 6.70 0.54 3.61 0.00 6.70 16 11 C -0.15 -4.04 7.04 71.98 0.51 -3.53 16 12 C 0.15 6.45 5.02 86.38 0.43 6.89 16 13 N -0.73 -37.16 5.17 -343.46 -1.78 -38.94 16 14 C -0.25 -14.23 9.99 84.03 0.84 -13.39 16 15 H 0.06 3.58 7.83 -2.91 -0.02 3.56 16 16 C -0.07 -3.79 5.50 84.86 0.47 -3.32 16 17 N -0.96 -57.74 13.06 21.65 0.28 -57.46 16 18 Si 0.97 46.93 29.55 68.60 2.03 48.96 16 19 H -0.28 -13.63 7.11 99.48 0.71 -12.92 16 20 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 21 H -0.28 -13.08 7.11 99.48 0.71 -12.38 16 22 C -0.16 -4.68 4.05 -10.79 -0.04 -4.72 16 23 C -0.17 -3.71 9.62 30.60 0.29 -3.42 16 24 C -0.16 -3.39 9.81 30.60 0.30 -3.09 16 25 H 0.26 2.19 7.80 -4.42 -0.03 2.15 16 26 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 27 H 0.09 1.63 8.14 -2.39 -0.02 1.62 16 28 H 0.04 1.35 8.10 -2.39 -0.02 1.33 16 29 H 0.07 1.68 8.10 -2.38 -0.02 1.66 16 30 H 0.13 2.54 8.14 -2.39 -0.02 2.52 16 31 H 0.10 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.41 10.26 8.48 -92.71 -0.79 9.47 16 33 H 0.08 2.10 6.84 -2.39 -0.02 2.08 16 34 H 0.05 1.71 6.86 -2.39 -0.02 1.69 16 35 H 0.09 1.81 7.01 -2.39 -0.02 1.79 16 36 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.01 0.45 6.64 -2.39 -0.02 0.43 16 38 H 0.38 19.59 6.35 -92.71 -0.59 19.00 16 39 H 0.25 14.71 8.31 -92.70 -0.77 13.93 16 40 H 0.09 3.01 7.18 -2.39 -0.02 2.99 16 41 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.11 2.19 5.87 -2.39 -0.01 2.18 16 43 H 0.10 1.97 7.42 -2.39 -0.02 1.95 16 44 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -72.39 366.21 2.90 -69.49 By element: Atomic # 1 Polarization: 39.22 SS G_CDS: -0.37 Total: 38.85 kcal Atomic # 6 Polarization: -9.62 SS G_CDS: 6.30 Total: -3.33 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -3.49 Total: -119.42 kcal Atomic # 8 Polarization: -32.98 SS G_CDS: -1.57 Total: -34.55 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -72.39 2.90 -69.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753518765.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.160 kcal (2) G-P(sol) polarization free energy of solvation -72.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds