Wall clock time and date at job start Tue Mar 31 2020 07:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46788 * 2 1 4 4 C 1.50699 * 109.46874 * 240.00489 * 2 1 3 5 5 H 1.08002 * 119.99724 * 239.99548 * 4 2 1 6 6 C 1.37879 * 120.00269 * 60.00051 * 4 2 1 7 7 N 1.31511 * 120.00106 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99883 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47161 * 59.99822 * 8 6 4 10 10 H 1.48498 * 109.46951 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47046 * 299.99945 * 8 6 4 12 12 N 1.46495 * 109.47185 * 120.00148 * 2 1 3 13 13 C 1.34774 * 120.00338 * 275.00292 * 12 2 1 14 14 O 1.21284 * 119.99360 * 359.97438 * 13 12 2 15 15 C 1.50691 * 120.00306 * 180.02562 * 13 12 2 16 16 H 1.09000 * 110.85434 * 297.66091 * 15 13 12 17 17 C 1.54633 * 110.97244 * 61.44836 * 15 13 12 18 18 C 1.51286 * 104.19223 * 93.35961 * 17 15 13 19 19 O 1.21281 * 124.93669 * 196.27658 * 18 17 15 20 20 N 1.34413 * 110.11759 * 16.25489 * 18 17 15 21 21 C 1.46506 * 124.35108 * 180.40819 * 20 18 17 22 22 C 1.54266 * 110.03146 * 57.18862 * 21 20 18 23 23 C 1.54886 * 104.19636 * 217.10974 * 22 21 20 24 24 C 1.54884 * 102.74871 * 37.94195 * 23 22 21 25 25 C 1.53873 * 110.03038 * 300.02432 * 21 20 18 26 26 C 1.46761 * 111.30221 * 0.67004 * 20 18 17 27 27 H 1.09003 * 109.47117 * 299.99830 * 1 2 3 28 28 H 1.09007 * 109.47121 * 59.99665 * 1 2 3 29 29 H 1.08995 * 109.47201 * 179.97438 * 1 2 3 30 30 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 31 31 H 0.96996 * 119.99845 * 94.99787 * 12 2 1 32 32 H 1.08992 * 110.48213 * 334.68615 * 17 15 13 33 33 H 1.08991 * 110.60105 * 212.09127 * 17 15 13 34 34 H 1.09000 * 110.01868 * 178.63235 * 21 20 18 35 35 H 1.08998 * 110.48638 * 335.78899 * 22 21 20 36 36 H 1.09001 * 110.48707 * 98.42986 * 22 21 20 37 37 H 1.09004 * 110.75377 * 279.62714 * 23 22 21 38 38 H 1.09002 * 110.75623 * 156.26319 * 23 22 21 39 39 H 1.09008 * 110.48289 * 203.37850 * 24 23 22 40 40 H 1.09002 * 110.48692 * 80.74044 * 24 23 22 41 41 H 1.08998 * 110.03454 * 238.56906 * 25 21 20 42 42 H 1.09004 * 110.03169 * 0.02562 * 25 21 20 43 43 H 1.09008 * 110.24430 * 101.71808 * 26 20 18 44 44 H 1.09005 * 110.24778 * 223.71735 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3225 -1.1193 -4.0081 9 1 1.8280 -2.5196 -4.0083 10 1 1.8269 -0.4197 -5.2205 11 1 3.8074 -1.1188 -4.0078 12 7 2.0183 -0.6906 1.1961 13 6 2.1470 -0.0184 2.3571 14 8 1.8590 1.1585 2.4114 15 6 2.6499 -0.7286 3.5873 16 1 1.9712 -1.5309 3.8769 17 6 4.0825 -1.2680 3.3683 18 6 4.9775 -0.1691 3.8978 19 8 6.1631 -0.0660 3.6643 20 7 4.2674 0.6764 4.6643 21 6 4.8249 1.8581 5.3269 22 6 5.4740 2.7916 4.2843 23 6 6.7248 3.3538 5.0044 24 6 7.2317 2.1333 5.8120 25 6 5.9425 1.4395 6.2983 26 6 2.8630 0.2604 4.7571 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.7081 1.1610 -3.4844 31 1 2.2490 -1.6317 1.1525 32 1 4.2694 -1.4342 2.3075 33 1 4.2357 -2.1889 3.9307 34 1 4.0402 2.3883 5.8666 35 1 5.7652 2.2290 3.3973 36 1 4.7919 3.5991 4.0181 37 1 6.4517 4.1718 5.6711 38 1 7.4740 3.6770 4.2816 39 1 7.8323 2.4604 6.6609 40 1 7.8067 1.4643 5.1718 41 1 5.7006 1.7673 7.3093 42 1 6.0703 0.3573 6.2763 43 1 2.6783 -0.2339 5.7110 44 1 2.2059 1.1228 4.6449 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000064318414.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:13 Heat of formation + Delta-G solvation = -84.311880 kcal Electronic energy + Delta-G solvation = -24631.869582 eV Core-core repulsion = 21162.320195 eV Total energy + Delta-G solvation = -3469.549388 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.86835 -38.83158 -37.31606 -35.97298 -34.76625 -32.64839 -31.85792 -28.96938 -28.71986 -27.57214 -27.31571 -25.28390 -23.39297 -21.51217 -20.76204 -20.59987 -19.41521 -18.65647 -17.62882 -16.90369 -16.08072 -15.77299 -15.39719 -15.09142 -14.88204 -14.47570 -14.25897 -13.95824 -13.61501 -13.41099 -13.19329 -13.03831 -12.48658 -12.34543 -11.85065 -11.67968 -11.64209 -11.52951 -11.31754 -11.15296 -11.09551 -11.04552 -10.96187 -10.86347 -10.75515 -10.57539 -10.34738 -10.25258 -9.51526 -9.11218 -9.07335 -8.58206 -8.57007 -7.97341 -6.13986 -4.23539 2.71101 3.05215 3.23028 3.25684 3.30735 3.32261 3.91245 4.33825 4.34662 4.41707 4.58470 4.65751 4.84637 4.91774 5.16944 5.18826 5.28216 5.37520 5.43601 5.48128 5.50373 5.54322 5.65444 5.66199 5.78983 5.84689 5.87210 5.91436 5.98312 6.14547 6.24152 6.38714 6.75806 6.78628 6.91589 7.10933 7.23119 7.40101 7.51072 7.66245 7.87894 8.12171 8.31092 8.59803 8.74274 9.04479 9.44035 10.91942 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021311 B = 0.003837 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.541446 B = 7295.114827 C = 7615.195377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.265 3.735 3 H 0.048 0.952 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.705 5.705 13 C 0.508 3.492 14 O -0.548 6.548 15 C -0.127 4.127 16 H 0.119 0.881 17 C -0.149 4.149 18 C 0.520 3.480 19 O -0.528 6.528 20 N -0.609 5.609 21 C 0.156 3.844 22 C -0.135 4.135 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.129 4.129 26 C 0.116 3.884 27 H 0.014 0.986 28 H 0.090 0.910 29 H 0.027 0.973 30 H 0.265 0.735 31 H 0.389 0.611 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.073 0.927 41 H 0.066 0.934 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.384 -1.874 17.643 18.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.066 0.934 4 C -0.574 4.574 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.352 5.352 13 C 0.292 3.708 14 O -0.426 6.426 15 C -0.149 4.149 16 H 0.137 0.863 17 C -0.190 4.190 18 C 0.308 3.692 19 O -0.404 6.404 20 N -0.343 5.343 21 C 0.054 3.946 22 C -0.174 4.174 23 C -0.158 4.158 24 C -0.157 4.157 25 C -0.168 4.168 26 C -0.007 4.007 27 H 0.033 0.967 28 H 0.109 0.891 29 H 0.046 0.954 30 H 0.075 0.925 31 H 0.222 0.778 32 H 0.127 0.873 33 H 0.128 0.872 34 H 0.108 0.892 35 H 0.099 0.901 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.079 0.921 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.716 -0.774 17.404 18.335 hybrid contribution 0.176 -1.002 -0.929 1.377 sum 5.892 -1.776 16.476 17.588 Atomic orbital electron populations 1.22076 0.98393 0.99124 1.00913 1.18748 0.91026 0.93952 0.79922 0.93428 1.21174 1.32591 1.13302 0.90331 0.92100 1.24878 0.94748 0.94921 0.99060 1.69886 1.35757 1.22415 1.24029 0.86509 0.79257 0.79575 0.81785 1.20129 1.21112 1.20119 1.46495 1.64704 1.13558 1.10438 1.20006 0.78834 0.87410 0.84593 1.90659 1.51347 1.15812 1.84810 1.22389 0.97608 0.99446 0.95486 0.86314 1.22401 0.92993 0.98613 1.04957 1.20715 0.87444 0.83169 0.77873 1.90691 1.14663 1.75267 1.59784 1.48362 1.10163 1.26024 1.49747 1.21623 0.95528 0.84608 0.92855 1.22725 0.96928 0.98626 0.99079 1.22410 0.97279 0.97300 0.98782 1.22288 0.96906 0.97145 0.99361 1.22477 0.95034 1.01242 0.98037 1.22045 0.82783 0.99270 0.96647 0.96679 0.89133 0.95431 0.92497 0.77849 0.87307 0.87230 0.89152 0.90111 0.91258 0.91696 0.91484 0.92141 0.90851 0.91558 0.91340 0.90775 0.88492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.56 9.26 37.16 0.34 -3.21 16 2 C 0.27 6.62 2.56 -69.08 -0.18 6.44 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.54 -14.06 8.73 -34.44 -0.30 -14.36 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16 7 N -0.88 -24.79 11.32 55.43 0.63 -24.16 16 8 Si 0.90 20.63 29.54 -169.99 -5.02 15.61 16 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 10 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 N -0.70 -13.93 4.79 -54.94 -0.26 -14.19 16 13 C 0.51 9.36 7.13 -10.99 -0.08 9.29 16 14 O -0.55 -12.30 15.20 5.55 0.08 -12.22 16 15 C -0.13 -1.59 3.54 -90.04 -0.32 -1.91 16 16 H 0.12 1.09 8.14 -51.93 -0.42 0.66 16 17 C -0.15 -1.85 6.39 -26.74 -0.17 -2.02 16 18 C 0.52 7.96 6.84 -10.86 -0.07 7.89 16 19 O -0.53 -9.62 15.92 5.56 0.09 -9.54 16 20 N -0.61 -8.18 2.83 -163.45 -0.46 -8.64 16 21 C 0.16 1.91 3.55 -66.81 -0.24 1.67 16 22 C -0.14 -1.84 6.29 -25.07 -0.16 -2.00 16 23 C -0.12 -1.34 6.91 -24.74 -0.17 -1.51 16 24 C -0.12 -1.32 6.83 -25.08 -0.17 -1.49 16 25 C -0.13 -1.41 6.02 -25.61 -0.15 -1.56 16 26 C 0.12 1.36 6.70 -3.03 -0.02 1.34 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.39 6.56 8.36 -40.82 -0.34 6.22 16 32 H 0.11 1.49 7.51 -51.93 -0.39 1.10 16 33 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.09 0.94 8.09 -51.93 -0.42 0.53 16 35 H 0.08 1.38 6.45 -51.93 -0.33 1.04 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 39 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 40 H 0.07 0.96 8.08 -51.93 -0.42 0.54 16 41 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.07 0.83 7.37 -51.93 -0.38 0.45 16 43 H 0.07 0.63 8.14 -51.92 -0.42 0.21 16 44 H 0.10 1.29 6.97 -51.93 -0.36 0.93 16 LS Contribution 350.89 15.07 5.29 5.29 Total: -1.00 -32.17 350.89 -8.57 -40.74 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -7.13 Total: 6.85 kcal Atomic # 6 Polarization: 2.05 SS G_CDS: -1.78 Total: 0.27 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: -0.10 Total: -47.00 kcal Atomic # 8 Polarization: -21.93 SS G_CDS: 0.17 Total: -21.75 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.17 -8.57 -40.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318414.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.574 kcal (2) G-P(sol) polarization free energy of solvation -32.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds