Wall clock time and date at job start Tue Mar 31 2020 07:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.46788 * 2 1 4 4 C 1.50699 * 109.46874 * 240.00489 * 2 1 3 5 5 H 1.08002 * 119.99724 * 239.99548 * 4 2 1 6 6 C 1.37879 * 120.00269 * 60.00051 * 4 2 1 7 7 N 1.31511 * 120.00106 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99883 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47161 * 59.99822 * 8 6 4 10 10 H 1.48498 * 109.46951 * 179.97438 * 8 6 4 11 11 H 1.48498 * 109.47046 * 299.99945 * 8 6 4 12 12 N 1.46495 * 109.47185 * 120.00148 * 2 1 3 13 13 C 1.34774 * 120.00338 * 275.00292 * 12 2 1 14 14 O 1.21284 * 119.99360 * 359.97438 * 13 12 2 15 15 C 1.50691 * 120.00306 * 180.02562 * 13 12 2 16 16 H 1.09000 * 110.85434 * 297.66091 * 15 13 12 17 17 C 1.54633 * 110.97244 * 61.44836 * 15 13 12 18 18 C 1.51286 * 104.19223 * 93.35961 * 17 15 13 19 19 O 1.21281 * 124.93669 * 196.27658 * 18 17 15 20 20 N 1.34413 * 110.11759 * 16.25489 * 18 17 15 21 21 C 1.46506 * 124.35108 * 180.40819 * 20 18 17 22 22 C 1.54266 * 110.03146 * 57.18862 * 21 20 18 23 23 C 1.54886 * 104.19636 * 217.10974 * 22 21 20 24 24 C 1.54884 * 102.74871 * 37.94195 * 23 22 21 25 25 C 1.53873 * 110.03038 * 300.02432 * 21 20 18 26 26 C 1.46761 * 111.30221 * 0.67004 * 20 18 17 27 27 H 1.09003 * 109.47117 * 299.99830 * 1 2 3 28 28 H 1.09007 * 109.47121 * 59.99665 * 1 2 3 29 29 H 1.08995 * 109.47201 * 179.97438 * 1 2 3 30 30 H 0.96997 * 119.99752 * 180.02562 * 7 6 4 31 31 H 0.96996 * 119.99845 * 94.99787 * 12 2 1 32 32 H 1.08992 * 110.48213 * 334.68615 * 17 15 13 33 33 H 1.08991 * 110.60105 * 212.09127 * 17 15 13 34 34 H 1.09000 * 110.01868 * 178.63235 * 21 20 18 35 35 H 1.08998 * 110.48638 * 335.78899 * 22 21 20 36 36 H 1.09001 * 110.48707 * 98.42986 * 22 21 20 37 37 H 1.09004 * 110.75377 * 279.62714 * 23 22 21 38 38 H 1.09002 * 110.75623 * 156.26319 * 23 22 21 39 39 H 1.09008 * 110.48289 * 203.37850 * 24 23 22 40 40 H 1.09002 * 110.48692 * 80.74044 * 24 23 22 41 41 H 1.08998 * 110.03454 * 238.56906 * 25 21 20 42 42 H 1.09004 * 110.03169 * 0.02562 * 25 21 20 43 43 H 1.09008 * 110.24430 * 101.71808 * 26 20 18 44 44 H 1.09005 * 110.24778 * 223.71735 * 26 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6034 8 14 2.3225 -1.1193 -4.0081 9 1 1.8280 -2.5196 -4.0083 10 1 1.8269 -0.4197 -5.2205 11 1 3.8074 -1.1188 -4.0078 12 7 2.0183 -0.6906 1.1961 13 6 2.1470 -0.0184 2.3571 14 8 1.8590 1.1585 2.4114 15 6 2.6499 -0.7286 3.5873 16 1 1.9712 -1.5309 3.8769 17 6 4.0825 -1.2680 3.3683 18 6 4.9775 -0.1691 3.8978 19 8 6.1631 -0.0660 3.6643 20 7 4.2674 0.6764 4.6643 21 6 4.8249 1.8581 5.3269 22 6 5.4740 2.7916 4.2843 23 6 6.7248 3.3538 5.0044 24 6 7.2317 2.1333 5.8120 25 6 5.9425 1.4395 6.2983 26 6 2.8630 0.2604 4.7571 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 0.7081 1.1610 -3.4844 31 1 2.2490 -1.6317 1.1525 32 1 4.2694 -1.4342 2.3075 33 1 4.2357 -2.1889 3.9307 34 1 4.0402 2.3883 5.8666 35 1 5.7652 2.2290 3.3973 36 1 4.7919 3.5991 4.0181 37 1 6.4517 4.1718 5.6711 38 1 7.4740 3.6770 4.2816 39 1 7.8323 2.4604 6.6609 40 1 7.8067 1.4643 5.1718 41 1 5.7006 1.7673 7.3093 42 1 6.0703 0.3573 6.2763 43 1 2.6783 -0.2339 5.7110 44 1 2.2059 1.1228 4.6449 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000064318414.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:12 Heat of formation + Delta-G solvation = -105.778516 kcal Electronic energy + Delta-G solvation = -24632.800446 eV Core-core repulsion = 21162.320195 eV Total energy + Delta-G solvation = -3470.480251 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.99994 -40.27925 -38.36149 -37.26662 -36.53239 -34.40431 -33.11459 -30.75303 -29.67506 -28.61509 -28.35840 -27.34229 -24.73616 -22.63755 -22.29037 -21.59676 -20.98390 -19.75295 -19.11040 -17.98660 -17.73415 -17.17574 -16.77258 -16.57229 -15.99781 -15.82942 -15.71727 -15.20343 -14.86356 -14.66442 -14.40266 -14.22295 -14.15326 -13.78005 -13.40746 -13.01830 -12.89341 -12.82878 -12.75469 -12.61904 -12.52165 -12.29494 -12.25680 -12.15525 -12.05738 -11.98705 -11.87567 -11.47383 -11.12460 -10.71782 -10.65856 -10.55386 -9.74403 -9.61910 -8.18886 -6.36290 1.43392 1.45527 1.52938 1.57738 1.78604 2.07554 2.33736 2.58840 3.11622 3.32461 3.38742 3.65012 3.68466 3.82663 3.92273 4.05414 4.37479 4.43988 4.46789 4.51489 4.56725 4.62621 4.70768 4.75408 4.76760 4.84174 4.90979 4.92704 4.93795 4.97155 5.07869 5.10010 5.17776 5.24663 5.43850 5.45614 5.60456 5.69713 5.75130 5.90564 6.10444 6.18678 6.71946 6.96058 7.19699 7.31753 7.56058 8.87004 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.021311 B = 0.003837 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.541446 B = 7295.114827 C = 7615.195377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.272 3.728 3 H -0.008 1.008 4 C -0.549 4.549 5 H 0.073 0.927 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.969 3.031 9 H -0.261 1.261 10 H -0.286 1.286 11 H -0.275 1.275 12 N -0.703 5.703 13 C 0.500 3.500 14 O -0.594 6.594 15 C -0.111 4.111 16 H 0.170 0.830 17 C -0.141 4.141 18 C 0.503 3.497 19 O -0.570 6.570 20 N -0.610 5.610 21 C 0.148 3.852 22 C -0.141 4.141 23 C -0.114 4.114 24 C -0.118 4.118 25 C -0.121 4.121 26 C 0.115 3.885 27 H 0.015 0.985 28 H 0.063 0.937 29 H 0.043 0.957 30 H 0.265 0.735 31 H 0.406 0.594 32 H 0.092 0.908 33 H 0.155 0.845 34 H 0.113 0.887 35 H 0.036 0.964 36 H 0.062 0.938 37 H 0.091 0.909 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.043 0.957 41 H 0.097 0.903 42 H 0.055 0.945 43 H 0.125 0.875 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.292 -3.922 19.875 20.938 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.168 3.832 3 H 0.010 0.990 4 C -0.587 4.587 5 H 0.091 0.909 6 C -0.185 4.185 7 N -0.555 5.555 8 Si 0.794 3.206 9 H -0.185 1.185 10 H -0.212 1.212 11 H -0.200 1.200 12 N -0.351 5.351 13 C 0.287 3.713 14 O -0.476 6.476 15 C -0.132 4.132 16 H 0.187 0.813 17 C -0.181 4.181 18 C 0.292 3.708 19 O -0.450 6.450 20 N -0.343 5.343 21 C 0.046 3.954 22 C -0.180 4.180 23 C -0.152 4.152 24 C -0.156 4.156 25 C -0.159 4.159 26 C -0.007 4.007 27 H 0.034 0.966 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.241 0.759 32 H 0.111 0.889 33 H 0.173 0.827 34 H 0.131 0.869 35 H 0.055 0.945 36 H 0.081 0.919 37 H 0.109 0.891 38 H 0.078 0.922 39 H 0.104 0.896 40 H 0.062 0.938 41 H 0.116 0.884 42 H 0.074 0.926 43 H 0.142 0.858 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.611 -2.856 19.673 20.656 hybrid contribution 0.203 -0.269 -1.616 1.651 sum 5.813 -3.126 18.057 19.225 Atomic orbital electron populations 1.21870 0.97951 0.99630 0.99590 1.18290 0.91311 0.91562 0.82044 0.99047 1.21544 1.32594 1.13611 0.90950 0.90913 1.25775 0.94861 0.95559 1.02287 1.70042 1.36970 1.23912 1.24621 0.85443 0.78472 0.78959 0.77756 1.18504 1.21164 1.20000 1.46231 1.64966 1.14283 1.09656 1.21106 0.77417 0.87038 0.85731 1.90642 1.53062 1.18175 1.85706 1.22419 0.98317 1.00241 0.92232 0.81251 1.22445 0.91750 0.99375 1.04541 1.21321 0.87392 0.84184 0.77935 1.90666 1.16567 1.76463 1.61268 1.48545 1.10828 1.25806 1.49100 1.21847 0.96686 0.84271 0.92590 1.22712 0.98316 0.98536 0.98387 1.22412 0.95814 0.98114 0.98831 1.22266 0.97251 0.96431 0.99616 1.22436 0.94024 1.00371 0.99065 1.22276 0.81220 0.98844 0.98407 0.96610 0.91800 0.93771 0.92584 0.75860 0.88909 0.82743 0.86882 0.94498 0.91930 0.89070 0.92223 0.89593 0.93832 0.88442 0.92610 0.85770 0.90260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.52 9.26 71.98 0.67 -5.85 16 2 C 0.27 13.93 2.56 44.25 0.11 14.05 16 3 H -0.01 -0.52 7.58 -2.39 -0.02 -0.54 16 4 C -0.55 -29.04 8.73 25.60 0.22 -28.82 16 5 H 0.07 3.58 7.74 -2.91 -0.02 3.56 16 6 C 0.02 0.83 5.30 84.66 0.45 1.28 16 7 N -0.92 -52.93 11.32 21.45 0.24 -52.69 16 8 Si 0.97 42.33 29.54 68.60 2.03 44.36 16 9 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 10 H -0.29 -12.42 7.11 99.48 0.71 -11.72 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 N -0.70 -27.61 4.79 -446.12 -2.14 -29.75 16 13 C 0.50 18.22 7.13 87.65 0.62 18.85 16 14 O -0.59 -27.46 15.20 -3.04 -0.05 -27.51 16 15 C -0.11 -2.43 3.54 -10.42 -0.04 -2.47 16 16 H 0.17 2.11 8.14 -2.39 -0.02 2.09 16 17 C -0.14 -3.15 6.39 30.59 0.20 -2.95 16 18 C 0.50 15.11 6.84 87.90 0.60 15.72 16 19 O -0.57 -21.44 15.92 -3.03 -0.05 -21.48 16 20 N -0.61 -15.60 2.83 -789.64 -2.23 -17.83 16 21 C 0.15 3.45 3.55 45.71 0.16 3.62 16 22 C -0.14 -3.98 6.29 31.67 0.20 -3.79 16 23 C -0.11 -2.50 6.91 31.88 0.22 -2.28 16 24 C -0.12 -2.51 6.83 31.67 0.22 -2.29 16 25 C -0.12 -2.39 6.02 31.32 0.19 -2.20 16 26 C 0.11 2.35 6.70 86.90 0.58 2.93 16 27 H 0.01 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 3.51 6.07 -2.38 -0.01 3.49 16 29 H 0.04 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.27 14.53 8.31 -92.71 -0.77 13.76 16 31 H 0.41 13.08 8.36 -92.71 -0.77 12.31 16 32 H 0.09 2.43 7.51 -2.39 -0.02 2.41 16 33 H 0.15 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.11 2.10 8.09 -2.39 -0.02 2.08 16 35 H 0.04 1.35 6.45 -2.39 -0.02 1.34 16 36 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.09 1.38 8.14 -2.38 -0.02 1.36 16 40 H 0.04 1.18 8.08 -2.39 -0.02 1.16 16 41 H 0.10 1.33 8.14 -2.39 -0.02 1.32 16 42 H 0.06 1.27 7.37 -2.39 -0.02 1.25 16 43 H 0.12 1.42 8.14 -2.38 -0.02 1.40 16 44 H 0.08 1.98 6.97 -2.38 -0.02 1.96 16 Total: -1.00 -76.08 350.89 2.43 -73.65 By element: Atomic # 1 Polarization: 25.23 SS G_CDS: 0.22 Total: 25.45 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 4.41 Total: 5.80 kcal Atomic # 7 Polarization: -96.14 SS G_CDS: -4.13 Total: -100.27 kcal Atomic # 8 Polarization: -48.90 SS G_CDS: -0.09 Total: -48.99 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -76.08 2.43 -73.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000064318414.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.127 kcal (2) G-P(sol) polarization free energy of solvation -76.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds