Wall clock time and date at job start Tue Mar 31 2020 07:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46899 * 109.46587 * 2 1 4 4 C 1.46898 * 110.99814 * 160.51564 * 3 2 1 5 5 C 1.50705 * 109.47150 * 287.75588 * 4 3 2 6 6 C 1.41376 * 126.57986 * 93.01323 * 5 4 3 7 7 C 1.34514 * 106.84205 * 179.97438 * 6 5 4 8 8 O 1.34307 * 108.41772 * 359.97438 * 7 6 5 9 9 C 1.34297 * 109.47472 * 359.76974 * 8 7 6 10 10 C 1.46903 * 111.00236 * 284.46647 * 3 2 1 11 11 H 1.09003 * 109.46911 * 205.17145 * 10 3 2 12 12 C 1.53004 * 109.47107 * 325.16944 * 10 3 2 13 13 C 1.50694 * 109.47233 * 85.16820 * 10 3 2 14 14 O 1.21287 * 119.99955 * 354.31142 * 13 10 3 15 15 N 1.34777 * 120.00489 * 174.31252 * 13 10 3 16 16 C 1.46506 * 119.99606 * 359.97438 * 15 13 10 17 17 C 1.46497 * 120.00166 * 180.02562 * 15 13 10 18 18 C 1.50701 * 109.47172 * 90.00095 * 17 15 13 19 19 H 1.08001 * 119.99988 * 359.97438 * 18 17 15 20 20 C 1.37879 * 119.99774 * 180.02562 * 18 17 15 21 21 N 1.31503 * 120.00171 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99562 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46920 * 90.00153 * 22 20 18 24 24 H 1.48500 * 109.46810 * 209.99606 * 22 20 18 25 25 H 1.48495 * 109.47246 * 329.99806 * 22 20 18 26 26 H 1.09007 * 109.46608 * 189.34736 * 1 2 3 27 27 H 1.08995 * 109.47280 * 309.34929 * 1 2 3 28 28 H 1.08994 * 109.47138 * 69.35244 * 1 2 3 29 29 H 1.08997 * 109.47204 * 240.00070 * 2 1 3 30 30 H 1.08992 * 109.47110 * 120.00060 * 2 1 3 31 31 H 1.09004 * 109.47638 * 47.75304 * 4 3 2 32 32 H 1.09002 * 109.47551 * 167.75463 * 4 3 2 33 33 H 1.08000 * 126.58137 * 0.02562 * 6 5 4 34 34 H 1.08000 * 125.79331 * 180.02562 * 7 6 5 35 35 H 1.08006 * 125.78998 * 180.23738 * 9 8 7 36 36 H 1.09004 * 109.47168 * 68.12356 * 12 10 3 37 37 H 1.08993 * 109.47073 * 188.12959 * 12 10 3 38 38 H 1.09000 * 109.47227 * 308.12823 * 12 10 3 39 39 H 1.09002 * 109.46832 * 90.00407 * 16 15 13 40 40 H 1.08996 * 109.46793 * 210.00340 * 16 15 13 41 41 H 1.08997 * 109.46979 * 330.00582 * 16 15 13 42 42 H 1.09004 * 109.46680 * 209.99231 * 17 15 13 43 43 H 1.08997 * 109.47095 * 329.99663 * 17 15 13 44 44 H 0.97001 * 120.00381 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4140 1.4505 0.4574 5 6 3.4685 1.1931 1.9413 6 6 3.6750 -0.0548 2.5730 7 6 3.6509 0.1708 3.8988 8 8 3.4425 1.4819 4.1025 9 6 3.3365 2.1075 2.9189 10 6 1.8720 1.9956 -1.3280 11 1 2.6025 2.7965 -1.4428 12 6 2.1046 0.9348 -2.4057 13 6 0.4818 2.5595 -1.4699 14 8 -0.3403 2.3728 -0.5979 15 7 0.1518 3.2711 -2.5659 16 6 1.1449 3.4971 -3.6189 17 6 -1.1996 3.8197 -2.7035 18 6 -1.2449 5.2008 -2.1020 19 1 -0.3560 5.6270 -1.6609 20 6 -2.4213 5.9196 -2.1140 21 7 -3.5038 5.4004 -2.6506 22 14 -2.4775 7.6313 -1.3677 23 1 -2.1429 8.6363 -2.4085 24 1 -3.8408 7.8977 -0.8425 25 1 -1.4937 7.7204 -0.2589 26 1 -0.3633 -1.0141 0.1669 27 1 -0.3633 0.6515 0.7946 28 1 -0.3633 0.3624 -0.9616 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 4.0033 0.6962 -0.0640 32 1 3.8201 2.4395 0.2451 33 1 3.8243 -1.0064 2.0847 34 1 3.7784 -0.5755 4.6690 35 1 3.1705 3.1652 2.7762 36 1 1.2911 0.2096 -2.3834 37 1 2.1385 1.4128 -3.3847 38 1 3.0500 0.4262 -2.2169 39 1 1.0895 2.6902 -4.3497 40 1 0.9421 4.4480 -4.1116 41 1 2.1419 3.5210 -3.1790 42 1 -1.4635 3.8747 -3.7597 43 1 -1.9084 3.1741 -2.1850 44 1 -4.3316 5.9060 -2.6587 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000102519313.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:47:28 Heat of formation + Delta-G solvation = 7.722877 kcal Electronic energy + Delta-G solvation = -24681.418456 eV Core-core repulsion = 21215.859995 eV Total energy + Delta-G solvation = -3465.558461 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.53952 -39.75229 -37.23293 -34.71640 -33.61813 -32.61835 -30.96552 -30.59887 -28.93978 -27.56839 -26.01146 -25.18810 -24.17205 -22.74515 -21.56787 -20.79939 -19.83777 -18.15875 -17.47826 -16.74432 -16.36595 -16.01902 -15.79058 -15.20749 -14.81302 -14.58094 -14.22811 -14.09655 -13.87478 -13.33108 -12.88044 -12.84891 -12.63148 -12.38994 -12.34281 -12.20734 -12.07423 -11.72418 -11.43940 -11.20243 -11.17910 -11.10567 -10.82298 -10.72804 -10.54677 -10.33461 -10.09442 -9.72523 -9.52441 -8.68266 -8.54102 -8.39230 -7.98155 -7.49193 -5.99645 -4.03946 1.78630 2.52832 3.15684 3.32779 3.39615 3.43838 3.57637 3.85006 4.34131 4.50571 4.75234 4.79160 5.00561 5.08607 5.17392 5.23315 5.32697 5.35336 5.36161 5.53228 5.60152 5.65627 5.71609 5.75967 5.77833 5.92464 5.98956 6.02276 6.08184 6.15447 6.22234 6.28532 6.46216 6.53785 6.98824 7.03535 7.12444 7.26307 7.34236 7.51275 7.65083 7.97883 8.29561 8.54346 8.97270 9.27382 9.61460 11.08259 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016968 B = 0.004211 C = 0.003746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.766999 B = 6647.696921 C = 7473.192512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.048 3.952 3 N -0.510 5.510 4 C 0.125 3.875 5 C -0.171 4.171 6 C -0.206 4.206 7 C -0.050 4.050 8 O -0.180 6.180 9 C -0.016 4.016 10 C 0.063 3.937 11 H 0.094 0.906 12 C -0.181 4.181 13 C 0.509 3.491 14 O -0.510 6.510 15 N -0.607 5.607 16 C 0.084 3.916 17 C 0.248 3.752 18 C -0.523 4.523 19 H 0.056 0.944 20 C 0.061 3.939 21 N -0.896 5.896 22 Si 0.897 3.103 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.035 0.965 27 H 0.075 0.925 28 H 0.059 0.941 29 H 0.039 0.961 30 H 0.068 0.932 31 H 0.041 0.959 32 H 0.080 0.920 33 H 0.143 0.857 34 H 0.198 0.802 35 H 0.202 0.798 36 H 0.068 0.932 37 H 0.072 0.928 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.071 0.929 41 H 0.054 0.946 42 H 0.029 0.971 43 H 0.043 0.957 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.111 -11.277 4.316 20.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.079 4.079 3 N -0.233 5.233 4 C -0.003 4.003 5 C -0.172 4.172 6 C -0.226 4.226 7 C -0.117 4.117 8 O -0.075 6.075 9 C -0.085 4.085 10 C -0.049 4.049 11 H 0.112 0.888 12 C -0.240 4.240 13 C 0.294 3.706 14 O -0.385 6.385 15 N -0.340 5.340 16 C -0.060 4.060 17 C 0.129 3.871 18 C -0.562 4.562 19 H 0.075 0.925 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.724 3.276 23 H -0.207 1.207 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.054 0.946 27 H 0.094 0.906 28 H 0.078 0.922 29 H 0.057 0.943 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.161 0.839 34 H 0.215 0.785 35 H 0.219 0.781 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.047 0.953 43 H 0.061 0.939 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.139 -10.929 5.354 20.213 hybrid contribution 0.422 0.462 -0.477 0.787 sum 16.561 -10.467 4.877 20.189 Atomic orbital electron populations 1.21884 0.93716 0.99247 1.04477 1.22263 0.97404 0.87977 1.00249 1.61802 1.18163 1.19111 1.24270 1.20394 0.89147 1.01102 0.89634 1.20225 1.07745 0.93070 0.96203 1.21693 1.08236 0.98839 0.93787 1.23909 1.06574 0.83442 0.97769 1.84071 1.69935 1.20368 1.33138 1.23921 1.04314 0.98981 0.81264 1.21705 0.97423 0.97378 0.88373 0.88807 1.22457 1.01896 0.99899 0.99711 1.20024 0.88811 0.79490 0.82304 1.90679 1.51027 1.57528 1.39272 1.48121 1.14733 1.52460 1.18735 1.21691 0.91724 1.01351 0.91257 1.19223 0.77001 0.93816 0.97037 1.21449 0.96218 1.00308 1.38207 0.92538 1.24926 0.95391 0.98381 0.95409 1.69927 1.00710 1.37772 1.45121 0.86521 0.77404 0.84197 0.79438 1.20725 1.21133 1.19904 0.94641 0.90604 0.92176 0.94285 0.91335 0.94067 0.90201 0.83946 0.78532 0.78119 0.91342 0.90875 0.92314 0.93887 0.90995 0.92712 0.95295 0.93939 0.92799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 8.18 37.16 0.30 -1.99 16 2 C 0.05 0.68 5.03 -3.82 -0.02 0.67 16 3 N -0.51 -7.61 3.99 -229.47 -0.92 -8.52 16 4 C 0.12 1.49 5.39 -4.97 -0.03 1.47 16 5 C -0.17 -2.10 5.15 -104.74 -0.54 -2.64 16 6 C -0.21 -2.24 9.55 -39.70 -0.38 -2.62 16 7 C -0.05 -0.50 12.09 29.42 0.36 -0.15 16 8 O -0.18 -2.21 10.65 5.71 0.06 -2.15 16 9 C -0.02 -0.20 12.01 29.41 0.35 0.15 16 10 C 0.06 0.95 1.88 -68.86 -0.13 0.82 16 11 H 0.09 1.28 6.42 -51.93 -0.33 0.94 16 12 C -0.18 -2.20 7.46 37.16 0.28 -1.92 16 13 C 0.51 10.46 6.11 -10.99 -0.07 10.39 16 14 O -0.51 -12.59 11.98 5.55 0.07 -12.52 16 15 N -0.61 -12.77 2.86 -182.95 -0.52 -13.29 16 16 C 0.08 1.31 8.94 59.85 0.53 1.85 16 17 C 0.25 6.52 5.16 -5.19 -0.03 6.50 16 18 C -0.52 -14.95 9.39 -34.44 -0.32 -15.27 16 19 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.90 -26.89 13.28 55.43 0.74 -26.15 16 22 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 26 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.07 1.51 7.25 -51.93 -0.38 1.14 16 28 H 0.06 1.14 5.33 -51.93 -0.28 0.87 16 29 H 0.04 0.49 5.24 -51.93 -0.27 0.22 16 30 H 0.07 0.91 6.06 -51.93 -0.31 0.60 16 31 H 0.04 0.44 7.94 -51.93 -0.41 0.02 16 32 H 0.08 0.88 7.61 -51.93 -0.40 0.49 16 33 H 0.14 1.29 8.03 -52.49 -0.42 0.87 16 34 H 0.20 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.20 2.13 8.06 -52.48 -0.42 1.71 16 36 H 0.07 0.91 6.03 -51.93 -0.31 0.60 16 37 H 0.07 0.81 5.40 -51.93 -0.28 0.53 16 38 H 0.06 0.59 7.66 -51.93 -0.40 0.20 16 39 H 0.04 0.58 7.19 -51.93 -0.37 0.20 16 40 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 41 H 0.05 0.70 6.01 -51.93 -0.31 0.39 16 42 H 0.03 0.77 8.07 -51.93 -0.42 0.35 16 43 H 0.04 1.26 7.42 -51.93 -0.39 0.87 16 44 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 345.53 15.07 5.21 5.21 Total: -1.00 -34.01 345.53 -6.69 -40.70 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: -6.52 Total: 0.71 kcal Atomic # 6 Polarization: -1.30 SS G_CDS: 0.22 Total: -1.08 kcal Atomic # 7 Polarization: -47.26 SS G_CDS: -0.70 Total: -47.96 kcal Atomic # 8 Polarization: -14.80 SS G_CDS: 0.13 Total: -14.67 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.01 -6.69 -40.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000102519313.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.427 kcal (2) G-P(sol) polarization free energy of solvation -34.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds