Wall clock time and date at job start Tue Mar 31 2020 07:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46504 * 109.46879 * 2 1 4 4 C 1.46757 * 124.34905 * 269.95460 * 3 2 1 5 5 C 1.54481 * 105.47227 * 197.03960 * 4 3 2 6 6 H 1.09003 * 111.00186 * 92.71776 * 5 4 3 7 7 C 1.50707 * 110.96956 * 216.46496 * 5 4 3 8 8 O 1.21286 * 119.99782 * 13.50011 * 7 5 4 9 9 N 1.34773 * 119.99931 * 193.49518 * 7 5 4 10 10 C 1.37100 * 119.99889 * 356.04595 * 9 7 5 11 11 H 1.08004 * 119.99713 * 237.56299 * 10 9 7 12 12 C 1.38945 * 120.00090 * 57.57165 * 10 9 7 13 13 N 1.31417 * 120.00485 * 21.12975 * 12 10 9 14 14 Si 1.86802 * 119.99795 * 201.13099 * 12 10 9 15 15 H 1.48505 * 109.47168 * 269.99780 * 14 12 10 16 16 H 1.48501 * 109.47055 * 30.00103 * 14 12 10 17 17 H 1.48503 * 109.46833 * 149.99876 * 14 12 10 18 18 C 1.46495 * 120.00135 * 176.03919 * 9 7 5 19 19 C 1.54265 * 110.03960 * 237.91189 * 18 9 7 20 20 C 1.54958 * 104.16202 * 217.13564 * 19 18 9 21 21 C 1.54892 * 102.77905 * 37.88605 * 20 19 18 22 22 C 1.53873 * 110.03192 * 120.69122 * 18 9 7 23 23 C 1.54630 * 101.76313 * 334.58470 * 5 4 3 24 24 C 1.34411 * 124.34762 * 89.98199 * 3 2 1 25 25 O 1.21282 * 124.94339 * 359.53052 * 24 3 2 26 26 H 1.08997 * 109.47436 * 59.99782 * 1 2 3 27 27 H 1.08997 * 109.46927 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46817 * 299.99562 * 1 2 3 29 29 H 1.09001 * 109.46817 * 240.00438 * 2 1 3 30 30 H 1.08997 * 109.47436 * 120.00218 * 2 1 3 31 31 H 1.08999 * 110.25140 * 78.04172 * 4 3 2 32 32 H 1.09003 * 110.25034 * 316.03876 * 4 3 2 33 33 H 0.97000 * 119.99996 * 174.46654 * 13 12 10 34 34 H 1.09000 * 110.01458 * 359.30610 * 18 9 7 35 35 H 1.09007 * 110.48301 * 335.78471 * 19 18 9 36 36 H 1.08998 * 110.48560 * 98.42553 * 19 18 9 37 37 H 1.09000 * 110.72102 * 279.56949 * 20 19 18 38 38 H 1.09000 * 110.92271 * 156.28996 * 20 19 18 39 39 H 1.08991 * 110.48976 * 203.40024 * 21 20 19 40 40 H 1.09000 * 110.59487 * 80.81596 * 21 20 19 41 41 H 1.09000 * 110.03542 * 238.57331 * 22 18 9 42 42 H 1.09000 * 110.03399 * 359.95631 * 22 18 9 43 43 H 1.08998 * 110.48215 * 143.47550 * 23 5 4 44 44 H 1.08999 * 110.48236 * 265.98679 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2952 2.1617 -1.2116 5 6 3.1754 3.3437 -0.7484 6 1 4.2343 3.1032 -0.8439 7 6 2.8392 4.5984 -1.5125 8 8 1.8259 4.6505 -2.1770 9 7 3.6644 5.6625 -1.4572 10 6 4.7669 5.6334 -0.6428 11 1 4.8946 6.3870 0.1202 12 6 5.7200 4.6346 -0.7993 13 7 5.8090 3.9835 -1.9373 14 14 6.8751 4.2172 0.6082 15 1 8.0976 5.0547 0.5104 16 1 6.1954 4.4825 1.9016 17 1 7.2505 2.7825 0.5315 18 6 3.3834 6.8502 -2.2675 19 6 4.5779 7.1513 -3.1961 20 6 4.6556 8.6987 -3.2243 21 6 4.3075 9.0858 -1.7655 22 6 3.2111 8.0797 -1.3585 23 6 2.7696 3.4753 0.7379 24 6 2.2708 2.0964 1.1097 25 8 2.1198 1.6949 2.2442 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.3650 2.5308 -1.6435 32 1 2.8335 1.5526 -1.9379 33 1 6.5244 3.3432 -2.0752 34 1 2.4811 6.6936 -2.8586 35 1 5.4958 6.7308 -2.7854 36 1 4.3918 6.7596 -4.1962 37 1 3.9221 9.1091 -3.9184 38 1 5.6600 9.0333 -3.4835 39 1 3.9248 10.1054 -1.7223 40 1 5.1807 8.9796 -1.1219 41 1 2.2256 8.5203 -1.5091 42 1 3.3358 7.7926 -0.3144 43 1 3.6326 3.7457 1.3464 44 1 1.9764 4.2140 0.8528 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125208703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:13 Heat of formation + Delta-G solvation = -73.447115 kcal Electronic energy + Delta-G solvation = -25436.189198 eV Core-core repulsion = 21967.110942 eV Total energy + Delta-G solvation = -3469.078256 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.19330 -38.79485 -36.86659 -35.67280 -34.32000 -33.24980 -31.54568 -29.32276 -27.96715 -27.22465 -26.87812 -24.89544 -23.45138 -22.13970 -20.02490 -19.45048 -19.39604 -18.77009 -17.12090 -16.27021 -15.79230 -15.59757 -15.23747 -14.77195 -14.65640 -14.26229 -13.95195 -13.49846 -13.39757 -13.18489 -12.91281 -12.75965 -12.67580 -12.33526 -11.89298 -11.81270 -11.63849 -11.29667 -11.15425 -11.01609 -10.98126 -10.66777 -10.56840 -10.52261 -10.47859 -10.39955 -10.36963 -9.99035 -9.68171 -9.40441 -8.94208 -8.36987 -8.27704 -7.32584 -6.52478 -4.35432 3.01516 3.04468 3.16115 3.19123 3.37318 3.84855 4.02253 4.58950 4.72809 4.92513 5.14823 5.32349 5.33286 5.34695 5.40428 5.48702 5.52530 5.70776 5.78429 5.80991 5.98578 6.06398 6.07769 6.20772 6.21897 6.27338 6.29804 6.31949 6.36806 6.46929 6.49327 6.52193 6.57242 6.71307 6.88629 6.94202 6.95592 7.08123 7.29615 7.38385 7.50404 7.96809 8.51175 8.60119 8.81118 9.45685 9.89713 10.50025 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016918 B = 0.005951 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.637320 B = 4704.291238 C = 5539.158169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.619 5.619 4 C 0.112 3.888 5 C -0.109 4.109 6 H 0.135 0.865 7 C 0.527 3.473 8 O -0.607 6.607 9 N -0.440 5.440 10 C -0.340 4.340 11 H 0.083 0.917 12 C 0.057 3.943 13 N -0.852 5.852 14 Si 0.891 3.109 15 H -0.274 1.274 16 H -0.262 1.262 17 H -0.279 1.279 18 C 0.133 3.867 19 C -0.119 4.119 20 C -0.123 4.123 21 C -0.116 4.116 22 C -0.126 4.126 23 C -0.131 4.131 24 C 0.520 3.480 25 O -0.549 6.549 26 H 0.059 0.941 27 H 0.063 0.937 28 H 0.057 0.943 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.273 0.727 34 H 0.077 0.923 35 H 0.093 0.907 36 H 0.049 0.951 37 H 0.055 0.945 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.065 0.935 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.105 0.895 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.333 -0.287 -0.355 2.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.000 4.000 3 N -0.353 5.353 4 C -0.010 4.010 5 C -0.131 4.131 6 H 0.153 0.847 7 C 0.315 3.685 8 O -0.493 6.493 9 N -0.158 5.158 10 C -0.468 4.468 11 H 0.101 0.899 12 C -0.150 4.150 13 N -0.487 5.487 14 Si 0.716 3.284 15 H -0.199 1.199 16 H -0.186 1.186 17 H -0.204 1.204 18 C 0.029 3.971 19 C -0.157 4.157 20 C -0.161 4.161 21 C -0.154 4.154 22 C -0.165 4.165 23 C -0.171 4.171 24 C 0.308 3.692 25 O -0.427 6.427 26 H 0.078 0.922 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.094 0.906 30 H 0.096 0.904 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.124 0.876 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -2.854 -0.724 -0.181 2.950 hybrid contribution 0.906 -0.266 0.426 1.036 sum -1.947 -0.991 0.245 2.198 Atomic orbital electron populations 1.22156 0.96096 1.01796 1.02616 1.21268 0.94214 0.81833 1.02665 1.48393 1.65479 1.13450 1.07980 1.22119 1.00662 0.92078 0.86168 1.22323 1.03993 0.93477 0.93294 0.84726 1.19821 0.82056 0.84864 0.81726 1.90500 1.27992 1.83913 1.46866 1.43292 1.22088 1.12249 1.38196 1.19069 1.00578 1.14323 1.12856 0.89904 1.25572 0.96509 0.96871 0.96011 1.69968 1.31352 1.25756 1.21663 0.86490 0.80820 0.78422 0.82622 1.19943 1.18576 1.20395 1.21610 0.97564 0.86218 0.91722 1.22578 1.01024 0.93616 0.98511 1.22456 1.00081 0.97184 0.96408 1.22248 0.98951 0.97489 0.96679 1.22393 0.97393 0.95679 1.01033 1.22129 1.03292 0.94481 0.97245 1.21126 0.76002 0.87935 0.84092 1.90642 1.54905 1.75854 1.21311 0.92236 0.91838 0.92360 0.90603 0.90442 0.89661 0.90871 0.91709 0.90523 0.88831 0.93181 0.92640 0.92468 0.93050 0.91657 0.93000 0.91065 0.87632 0.88332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 10.24 37.16 0.38 -1.74 16 2 C 0.12 1.72 6.65 -4.04 -0.03 1.69 16 3 N -0.62 -10.87 2.93 -172.42 -0.51 -11.37 16 4 C 0.11 2.08 6.81 -3.12 -0.02 2.06 16 5 C -0.11 -2.27 2.52 -90.13 -0.23 -2.50 16 6 H 0.14 3.01 4.47 -51.93 -0.23 2.78 16 7 C 0.53 12.20 6.46 -10.98 -0.07 12.13 16 8 O -0.61 -15.14 14.87 5.55 0.08 -15.06 16 9 N -0.44 -9.91 2.31 -106.55 -0.25 -10.15 16 10 C -0.34 -7.65 6.59 -14.93 -0.10 -7.75 16 11 H 0.08 1.86 7.28 -52.48 -0.38 1.47 16 12 C 0.06 1.29 3.30 -17.47 -0.06 1.24 16 13 N -0.85 -20.18 11.98 55.50 0.66 -19.51 16 14 Si 0.89 18.10 29.61 -169.99 -5.03 13.07 16 15 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 16 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 17 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 18 C 0.13 2.74 3.29 -66.82 -0.22 2.52 16 19 C -0.12 -2.31 6.42 -25.04 -0.16 -2.47 16 20 C -0.12 -1.94 6.91 -24.70 -0.17 -2.11 16 21 C -0.12 -1.80 6.83 -25.07 -0.17 -1.97 16 22 C -0.13 -2.24 6.27 -25.61 -0.16 -2.40 16 23 C -0.13 -2.58 6.11 -26.74 -0.16 -2.74 16 24 C 0.52 10.31 8.02 -10.87 -0.09 10.22 16 25 O -0.55 -12.10 17.60 5.56 0.10 -12.01 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 30 H 0.08 1.10 7.93 -51.93 -0.41 0.69 16 31 H 0.09 1.65 6.85 -51.93 -0.36 1.29 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.27 6.20 8.32 -40.82 -0.34 5.86 16 34 H 0.08 1.69 6.95 -51.93 -0.36 1.32 16 35 H 0.09 2.06 7.04 -51.93 -0.37 1.70 16 36 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 1.33 6.94 -51.93 -0.36 0.97 16 43 H 0.11 2.08 8.14 -51.93 -0.42 1.65 16 44 H 0.10 1.90 7.89 -51.93 -0.41 1.49 16 LS Contribution 348.39 15.07 5.25 5.25 Total: -1.00 -26.86 348.39 -8.03 -34.89 By element: Atomic # 1 Polarization: 15.81 SS G_CDS: -7.09 Total: 8.72 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -1.26 Total: 6.17 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: -0.09 Total: -41.04 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: 0.18 Total: -27.07 kcal Atomic # 14 Polarization: 18.10 SS G_CDS: -5.03 Total: 13.07 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -26.86 -8.03 -34.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125208703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.553 kcal (2) G-P(sol) polarization free energy of solvation -26.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds