Wall clock time and date at job start Tue Mar 31 2020 07:37:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46504 * 109.46879 * 2 1 4 4 C 1.46757 * 124.34905 * 269.95460 * 3 2 1 5 5 C 1.54481 * 105.47227 * 197.03960 * 4 3 2 6 6 H 1.09003 * 111.00186 * 92.71776 * 5 4 3 7 7 C 1.50707 * 110.96956 * 216.46496 * 5 4 3 8 8 O 1.21286 * 119.99782 * 13.50011 * 7 5 4 9 9 N 1.34773 * 119.99931 * 193.49518 * 7 5 4 10 10 C 1.37100 * 119.99889 * 356.04595 * 9 7 5 11 11 H 1.08004 * 119.99713 * 237.56299 * 10 9 7 12 12 C 1.38945 * 120.00090 * 57.57165 * 10 9 7 13 13 N 1.31417 * 120.00485 * 21.12975 * 12 10 9 14 14 Si 1.86802 * 119.99795 * 201.13099 * 12 10 9 15 15 H 1.48505 * 109.47168 * 269.99780 * 14 12 10 16 16 H 1.48501 * 109.47055 * 30.00103 * 14 12 10 17 17 H 1.48503 * 109.46833 * 149.99876 * 14 12 10 18 18 C 1.46495 * 120.00135 * 176.03919 * 9 7 5 19 19 C 1.54265 * 110.03960 * 237.91189 * 18 9 7 20 20 C 1.54958 * 104.16202 * 217.13564 * 19 18 9 21 21 C 1.54892 * 102.77905 * 37.88605 * 20 19 18 22 22 C 1.53873 * 110.03192 * 120.69122 * 18 9 7 23 23 C 1.54630 * 101.76313 * 334.58470 * 5 4 3 24 24 C 1.34411 * 124.34762 * 89.98199 * 3 2 1 25 25 O 1.21282 * 124.94339 * 359.53052 * 24 3 2 26 26 H 1.08997 * 109.47436 * 59.99782 * 1 2 3 27 27 H 1.08997 * 109.46927 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46817 * 299.99562 * 1 2 3 29 29 H 1.09001 * 109.46817 * 240.00438 * 2 1 3 30 30 H 1.08997 * 109.47436 * 120.00218 * 2 1 3 31 31 H 1.08999 * 110.25140 * 78.04172 * 4 3 2 32 32 H 1.09003 * 110.25034 * 316.03876 * 4 3 2 33 33 H 0.97000 * 119.99996 * 174.46654 * 13 12 10 34 34 H 1.09000 * 110.01458 * 359.30610 * 18 9 7 35 35 H 1.09007 * 110.48301 * 335.78471 * 19 18 9 36 36 H 1.08998 * 110.48560 * 98.42553 * 19 18 9 37 37 H 1.09000 * 110.72102 * 279.56949 * 20 19 18 38 38 H 1.09000 * 110.92271 * 156.28996 * 20 19 18 39 39 H 1.08991 * 110.48976 * 203.40024 * 21 20 19 40 40 H 1.09000 * 110.59487 * 80.81596 * 21 20 19 41 41 H 1.09000 * 110.03542 * 238.57331 * 22 18 9 42 42 H 1.09000 * 110.03399 * 359.95631 * 22 18 9 43 43 H 1.08998 * 110.48215 * 143.47550 * 23 5 4 44 44 H 1.08999 * 110.48236 * 265.98679 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2952 2.1617 -1.2116 5 6 3.1754 3.3437 -0.7484 6 1 4.2343 3.1032 -0.8439 7 6 2.8392 4.5984 -1.5125 8 8 1.8259 4.6505 -2.1770 9 7 3.6644 5.6625 -1.4572 10 6 4.7669 5.6334 -0.6428 11 1 4.8946 6.3870 0.1202 12 6 5.7200 4.6346 -0.7993 13 7 5.8090 3.9835 -1.9373 14 14 6.8751 4.2172 0.6082 15 1 8.0976 5.0547 0.5104 16 1 6.1954 4.4825 1.9016 17 1 7.2505 2.7825 0.5315 18 6 3.3834 6.8502 -2.2675 19 6 4.5779 7.1513 -3.1961 20 6 4.6556 8.6987 -3.2243 21 6 4.3075 9.0858 -1.7655 22 6 3.2111 8.0797 -1.3585 23 6 2.7696 3.4753 0.7379 24 6 2.2708 2.0964 1.1097 25 8 2.1198 1.6949 2.2442 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.3650 2.5308 -1.6435 32 1 2.8335 1.5526 -1.9379 33 1 6.5244 3.3432 -2.0752 34 1 2.4811 6.6936 -2.8586 35 1 5.4958 6.7308 -2.7854 36 1 4.3918 6.7596 -4.1962 37 1 3.9221 9.1091 -3.9184 38 1 5.6600 9.0333 -3.4835 39 1 3.9248 10.1054 -1.7223 40 1 5.1807 8.9796 -1.1219 41 1 2.2256 8.5203 -1.5091 42 1 3.3358 7.7926 -0.3144 43 1 3.6326 3.7457 1.3464 44 1 1.9764 4.2140 0.8528 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125208703.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:37:12 Heat of formation + Delta-G solvation = -86.902020 kcal Electronic energy + Delta-G solvation = -25436.772646 eV Core-core repulsion = 21967.110942 eV Total energy + Delta-G solvation = -3469.661704 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.79268 -40.44825 -38.45377 -37.24573 -36.05179 -34.61057 -33.29274 -30.68092 -29.41006 -28.78528 -28.42424 -26.65627 -24.76942 -23.63103 -21.39697 -21.11979 -21.00503 -20.28750 -18.80793 -17.80762 -17.39652 -17.24169 -16.83458 -16.31959 -16.16405 -15.81246 -15.51439 -14.97656 -14.86224 -14.61565 -14.38148 -14.34457 -14.16857 -13.92537 -13.33610 -13.21666 -13.05726 -12.89612 -12.77944 -12.60172 -12.25742 -12.22358 -12.16731 -12.04195 -11.95374 -11.83816 -11.77063 -11.33986 -11.27605 -11.02481 -10.68048 -10.16315 -9.75087 -9.10215 -8.29716 -6.16475 1.38493 1.45313 1.50396 1.55895 1.92593 2.11879 2.31219 2.92908 2.96854 3.41442 3.67900 3.91884 3.94713 4.08460 4.10392 4.13961 4.24219 4.28262 4.45712 4.54360 4.61412 4.68388 4.72064 4.80039 4.81455 4.84879 4.88531 4.89870 4.95079 4.96761 5.13221 5.20495 5.22598 5.27596 5.28890 5.48367 5.54829 5.56630 5.60682 5.71519 5.99872 6.21545 6.71755 7.02695 7.06650 7.65757 8.11383 8.73548 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.016918 B = 0.005951 C = 0.005054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.637320 B = 4704.291238 C = 5539.158169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.113 3.887 3 N -0.611 5.611 4 C 0.122 3.878 5 C -0.107 4.107 6 H 0.123 0.877 7 C 0.513 3.487 8 O -0.633 6.633 9 N -0.443 5.443 10 C -0.343 4.343 11 H 0.084 0.916 12 C 0.036 3.964 13 N -0.875 5.875 14 Si 0.937 3.063 15 H -0.271 1.271 16 H -0.259 1.259 17 H -0.283 1.283 18 C 0.121 3.879 19 C -0.115 4.115 20 C -0.113 4.113 21 C -0.109 4.109 22 C -0.121 4.121 23 C -0.126 4.126 24 C 0.517 3.483 25 O -0.574 6.574 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.038 0.962 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.274 0.726 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.058 0.942 43 H 0.103 0.897 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.148 -0.003 -0.328 2.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.008 4.008 3 N -0.344 5.344 4 C -0.001 4.001 5 C -0.129 4.129 6 H 0.140 0.860 7 C 0.302 3.698 8 O -0.521 6.521 9 N -0.161 5.161 10 C -0.471 4.471 11 H 0.101 0.899 12 C -0.169 4.169 13 N -0.511 5.511 14 Si 0.761 3.239 15 H -0.196 1.196 16 H -0.183 1.183 17 H -0.208 1.208 18 C 0.018 3.982 19 C -0.153 4.153 20 C -0.151 4.151 21 C -0.146 4.146 22 C -0.160 4.160 23 C -0.166 4.166 24 C 0.306 3.694 25 O -0.455 6.455 26 H 0.076 0.924 27 H 0.113 0.887 28 H 0.057 0.943 29 H 0.122 0.878 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.106 0.894 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.100 0.900 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.121 0.879 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.663 -0.434 -0.168 2.703 hybrid contribution 0.828 -0.359 0.353 0.969 sum -1.835 -0.792 0.185 2.007 Atomic orbital electron populations 1.22102 0.94789 1.03531 1.01543 1.21626 0.95304 0.79821 1.04028 1.48478 1.64535 1.14572 1.06813 1.21985 0.99956 0.91628 0.86565 1.22203 1.03595 0.93347 0.93756 0.85987 1.20243 0.81887 0.85744 0.81876 1.90469 1.29008 1.84524 1.48118 1.43477 1.21868 1.12675 1.38046 1.19150 1.00519 1.14508 1.12926 0.89854 1.25976 0.97366 0.96461 0.97087 1.70032 1.31947 1.26215 1.22905 0.85783 0.79536 0.77816 0.80742 1.19589 1.18336 1.20841 1.21818 0.97201 0.86829 0.92392 1.22466 0.98932 0.96655 0.97280 1.22423 1.01679 0.93866 0.97106 1.22220 0.97922 0.98343 0.96127 1.22338 0.99186 0.94989 0.99472 1.22064 1.03188 0.94896 0.96478 1.21057 0.76077 0.88034 0.84211 1.90625 1.56327 1.76294 1.22211 0.92358 0.88728 0.94303 0.87838 0.90465 0.90403 0.89438 0.91654 0.92492 0.91628 0.94217 0.90835 0.90889 0.89975 0.92142 0.91646 0.92343 0.87858 0.88389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.76 10.24 71.98 0.74 -3.02 16 2 C 0.11 2.95 6.65 86.38 0.57 3.53 16 3 N -0.61 -20.88 2.93 -818.00 -2.40 -23.28 16 4 C 0.12 4.43 6.81 86.83 0.59 5.03 16 5 C -0.11 -4.49 2.52 -10.48 -0.03 -4.52 16 6 H 0.12 5.49 4.47 -2.39 -0.01 5.47 16 7 C 0.51 24.19 6.46 87.66 0.57 24.75 16 8 O -0.63 -32.27 14.87 -3.05 -0.05 -32.31 16 9 N -0.44 -20.26 2.31 -609.39 -1.41 -21.67 16 10 C -0.34 -15.51 6.59 84.04 0.55 -14.96 16 11 H 0.08 3.73 7.28 -2.91 -0.02 3.71 16 12 C 0.04 1.64 3.30 84.92 0.28 1.92 16 13 N -0.88 -41.70 11.98 21.66 0.26 -41.44 16 14 Si 0.94 36.77 29.61 68.60 2.03 38.80 16 15 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 16 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 17 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 18 C 0.12 5.03 3.29 45.72 0.15 5.18 16 19 C -0.11 -4.45 6.42 31.69 0.20 -4.25 16 20 C -0.11 -3.30 6.91 31.91 0.22 -3.08 16 21 C -0.11 -3.10 6.83 31.67 0.22 -2.88 16 22 C -0.12 -4.18 6.27 31.32 0.20 -3.98 16 23 C -0.13 -4.97 6.11 30.59 0.19 -4.78 16 24 C 0.52 20.38 8.02 87.90 0.71 21.08 16 25 O -0.57 -25.17 17.60 -3.04 -0.05 -25.23 16 26 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 28 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.08 2.06 7.93 -2.39 -0.02 2.05 16 31 H 0.08 3.00 6.85 -2.39 -0.02 2.99 16 32 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 33 H 0.27 12.49 8.32 -92.71 -0.77 11.72 16 34 H 0.06 2.56 6.95 -2.39 -0.02 2.54 16 35 H 0.07 2.92 7.04 -2.38 -0.02 2.90 16 36 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 37 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 39 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 42 H 0.06 2.15 6.94 -2.39 -0.02 2.13 16 43 H 0.10 4.08 8.14 -2.39 -0.02 4.06 16 44 H 0.10 3.85 7.89 -2.39 -0.02 3.83 16 Total: -1.00 -57.83 348.39 4.52 -53.31 By element: Atomic # 1 Polarization: 30.84 SS G_CDS: 0.98 Total: 31.82 kcal Atomic # 6 Polarization: 14.85 SS G_CDS: 5.16 Total: 20.01 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -3.55 Total: -86.39 kcal Atomic # 8 Polarization: -57.44 SS G_CDS: -0.10 Total: -57.54 kcal Atomic # 14 Polarization: 36.77 SS G_CDS: 2.03 Total: 38.80 kcal Total: -57.83 4.52 -53.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125208703.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.596 kcal (2) G-P(sol) polarization free energy of solvation -57.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds