Wall clock time and date at job start Tue Mar 31 2020 06:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47642 * 2 1 4 4 C 1.52997 * 109.47688 * 239.98393 * 2 1 3 5 5 C 1.53010 * 109.56408 * 300.40151 * 4 2 1 6 6 H 1.09001 * 109.47786 * 59.58397 * 5 4 2 7 7 C 1.52996 * 109.49081 * 179.60979 * 5 4 2 8 8 C 1.53091 * 109.41317 * 299.59989 * 5 4 2 9 9 C 1.52469 * 109.52511 * 59.17216 * 8 5 4 10 10 C 1.52477 * 110.72509 * 301.24805 * 9 8 5 11 11 N 1.46854 * 110.49013 * 63.98981 * 9 8 5 12 12 C 1.34669 * 106.41849 * 118.55312 * 11 9 8 13 13 O 1.21538 * 123.79438 * 179.97438 * 12 11 9 14 14 N 1.33869 * 112.42146 * 0.02562 * 12 11 9 15 15 C 1.46498 * 124.19469 * 179.97438 * 14 12 11 16 16 C 1.53004 * 109.47138 * 90.02152 * 15 14 12 17 17 C 1.50708 * 109.47050 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00011 * 0.02562 * 17 16 15 19 19 C 1.37872 * 119.99673 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00572 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99585 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47068 * 270.00051 * 21 19 17 23 23 H 1.48497 * 109.47295 * 30.00090 * 21 19 17 24 24 H 1.48499 * 109.47084 * 150.00157 * 21 19 17 25 25 C 1.34912 * 111.60968 * 0.22443 * 14 12 11 26 26 O 1.21236 * 127.25530 * 179.76639 * 25 14 12 27 27 H 1.09001 * 109.47234 * 152.52319 * 1 2 3 28 28 H 1.09003 * 109.47185 * 272.52316 * 1 2 3 29 29 H 1.08997 * 109.47540 * 32.52182 * 1 2 3 30 30 H 1.09000 * 109.45383 * 180.38123 * 4 2 1 31 31 H 1.08996 * 109.44572 * 60.42491 * 4 2 1 32 32 H 1.08998 * 109.47234 * 179.97438 * 7 5 4 33 33 H 1.09006 * 109.47254 * 299.94840 * 7 5 4 34 34 H 1.09001 * 109.47263 * 59.94577 * 7 5 4 35 35 H 1.08997 * 109.46752 * 299.15302 * 8 5 4 36 36 H 1.09005 * 109.45014 * 179.18163 * 8 5 4 37 37 H 1.09005 * 109.46499 * 178.76133 * 10 9 8 38 38 H 1.09005 * 109.46131 * 298.72797 * 10 9 8 39 39 H 0.96999 * 126.79512 * 298.54137 * 11 9 8 40 40 H 1.09005 * 109.47497 * 330.02306 * 15 14 12 41 41 H 1.09005 * 109.47536 * 210.02363 * 15 14 12 42 42 H 1.08999 * 109.46876 * 60.00412 * 16 15 14 43 43 H 1.08998 * 109.47159 * 299.99813 * 16 15 14 44 44 H 0.96997 * 120.00173 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7216 -1.2490 5 6 1.5231 -2.1616 -1.2558 6 1 0.4331 -2.1565 -1.2526 7 6 2.0262 -2.8787 -2.5102 8 6 2.0340 -2.8916 -0.0109 9 6 1.5504 -2.1660 1.2397 10 6 2.0407 -0.7222 1.2495 11 7 0.0851 -2.2117 1.3264 12 6 -0.2086 -2.8714 2.4631 13 8 -1.3417 -3.0891 2.8448 14 7 0.8878 -3.2595 3.1261 15 6 0.8667 -3.9948 4.3929 16 6 0.8563 -5.4984 4.1097 17 6 0.8352 -6.2549 5.4130 18 1 0.8294 -5.7171 6.3495 19 6 0.8223 -7.6336 5.4096 20 7 0.8289 -8.2885 4.2692 21 14 0.7955 -8.5712 7.0251 22 1 2.1883 -8.8328 7.4687 23 1 0.0915 -7.7646 8.0540 24 1 0.0854 -9.8618 6.8366 25 6 2.0145 -2.8846 2.4856 26 8 3.1582 -3.0844 2.8346 27 1 -0.3634 -0.9117 -0.4742 28 1 -0.3634 0.0452 1.0267 29 1 -0.3634 0.8665 -0.5525 30 1 3.1301 -0.7273 -1.2452 31 1 1.6829 -0.2033 -2.1388 32 1 1.6581 -3.9046 -2.5146 33 1 1.6623 -2.3588 -3.3965 34 1 3.1162 -2.8833 -2.5137 35 1 3.1238 -2.9095 -0.0219 36 1 1.6541 -3.9133 -0.0078 37 1 1.6657 -0.2172 2.1397 38 1 3.1307 -0.7089 1.2566 39 1 -0.5463 -1.8401 0.6907 40 1 -0.0273 -3.7248 4.9550 41 1 1.7525 -3.7409 4.9753 42 1 1.7503 -5.7685 3.5477 43 1 -0.0295 -5.7523 3.5275 44 1 0.8202 -9.2585 4.2669 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128058160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:08 Heat of formation + Delta-G solvation = -55.457650 kcal Electronic energy + Delta-G solvation = -25235.718836 eV Core-core repulsion = 21767.420662 eV Total energy + Delta-G solvation = -3468.298174 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.55898 -39.19578 -38.17315 -35.51903 -34.75534 -33.50961 -32.79724 -30.61215 -29.90752 -27.13958 -26.82567 -25.44553 -23.88396 -22.35348 -21.71069 -21.14242 -19.82602 -19.11972 -17.55547 -16.65270 -16.27925 -16.09317 -15.51579 -15.23441 -14.90963 -14.75934 -14.44619 -14.36924 -13.95407 -13.74614 -13.42541 -13.12291 -12.92507 -12.66491 -12.37653 -12.19524 -11.96685 -11.81908 -11.70909 -11.51087 -11.25808 -11.05793 -10.94397 -10.80755 -10.74788 -10.41622 -10.33312 -10.09174 -10.04399 -9.57406 -9.23569 -9.22217 -8.82878 -8.37353 -6.02156 -4.05842 1.95421 2.67722 3.33647 3.35968 3.39504 3.43255 3.46144 4.07260 4.27075 4.34022 4.46162 4.62847 4.67259 4.73025 4.89606 4.97506 5.12175 5.26005 5.33890 5.34556 5.42277 5.47390 5.53933 5.57322 5.60260 5.69774 5.74500 5.81740 5.87567 5.93454 6.03045 6.05130 6.09574 6.15008 6.24244 6.34869 6.68576 6.99410 7.44248 7.59855 7.74304 7.77234 7.95124 8.30354 8.52311 8.99268 9.58121 11.09606 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025260 B = 0.004023 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.218605 B = 6958.020364 C = 7228.961780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.087 4.087 3 H 0.080 0.920 4 C -0.112 4.112 5 C -0.092 4.092 6 H 0.075 0.925 7 C -0.147 4.147 8 C -0.110 4.110 9 C 0.126 3.874 10 C -0.109 4.109 11 N -0.729 5.729 12 C 0.697 3.303 13 O -0.542 6.542 14 N -0.568 5.568 15 C 0.118 3.882 16 C 0.013 3.987 17 C -0.521 4.521 18 H 0.059 0.941 19 C 0.060 3.940 20 N -0.892 5.892 21 Si 0.897 3.103 22 H -0.280 1.280 23 H -0.272 1.272 24 H -0.286 1.286 25 C 0.528 3.472 26 O -0.467 6.467 27 H 0.063 0.937 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.074 0.926 38 H 0.088 0.912 39 H 0.435 0.565 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.021 0.979 43 H 0.024 0.976 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.369 18.083 -14.096 23.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.106 4.106 3 H 0.098 0.902 4 C -0.150 4.150 5 C -0.111 4.111 6 H 0.093 0.907 7 C -0.204 4.204 8 C -0.148 4.148 9 C 0.035 3.965 10 C -0.147 4.147 11 N -0.402 5.402 12 C 0.398 3.602 13 O -0.415 6.415 14 N -0.313 5.313 15 C -0.001 4.001 16 C -0.025 4.025 17 C -0.560 4.560 18 H 0.078 0.922 19 C -0.142 4.142 20 N -0.531 5.531 21 Si 0.725 3.275 22 H -0.206 1.206 23 H -0.197 1.197 24 H -0.212 1.212 25 C 0.314 3.686 26 O -0.337 6.337 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.287 0.713 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.039 0.961 43 H 0.042 0.958 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.368 17.608 -13.650 22.405 hybrid contribution -0.305 -0.595 0.578 0.884 sum 2.063 17.013 -13.072 21.554 Atomic orbital electron populations 1.22325 0.95633 1.01652 1.02615 1.21095 0.95779 0.99481 0.94231 0.90200 1.21686 1.01113 0.94819 0.97357 1.21197 1.00688 0.94811 0.94355 0.90697 1.21805 1.01451 1.00532 0.96617 1.21736 1.02356 0.99433 0.91293 1.21005 0.82053 0.97670 0.95774 1.21750 1.02117 0.91778 0.99073 1.46548 1.06979 1.61398 1.25230 1.16139 0.84697 0.78293 0.81088 1.90986 1.19854 1.59996 1.70662 1.46793 1.07144 1.52159 1.25213 1.22192 1.02899 0.94925 0.80040 1.19403 0.98020 0.86963 0.98112 1.21003 1.51582 0.91338 0.92089 0.92242 1.24989 0.94968 0.97739 0.96491 1.69970 1.50188 1.07727 1.25211 0.86508 0.78123 0.79264 0.83613 1.20564 1.19714 1.21167 1.20573 0.85180 0.78102 0.84771 1.90765 1.18547 1.54221 1.70175 0.91845 0.91465 0.92243 0.91288 0.91500 0.92322 0.92539 0.92390 0.89354 0.90364 0.90745 0.89368 0.71315 0.89760 0.89991 0.96107 0.95792 0.92875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.16 7.57 37.16 0.28 -0.87 16 2 C -0.09 -0.62 3.20 -90.58 -0.29 -0.91 16 3 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 4 C -0.11 -0.75 4.72 -26.73 -0.13 -0.88 16 5 C -0.09 -0.75 2.39 -90.57 -0.22 -0.96 16 6 H 0.07 0.61 5.57 -51.93 -0.29 0.32 16 7 C -0.15 -1.10 9.20 37.16 0.34 -0.76 16 8 C -0.11 -1.21 4.28 -26.96 -0.12 -1.33 16 9 C 0.13 1.57 0.83 -133.11 -0.11 1.46 16 10 C -0.11 -1.04 4.49 -26.95 -0.12 -1.16 16 11 N -0.73 -9.56 4.30 -53.88 -0.23 -9.80 16 12 C 0.70 12.75 8.63 -87.82 -0.76 11.99 16 13 O -0.54 -11.82 17.48 5.33 0.09 -11.73 16 14 N -0.57 -10.99 2.61 -120.80 -0.32 -11.30 16 15 C 0.12 2.62 5.65 -4.04 -0.02 2.60 16 16 C 0.01 0.35 5.30 -27.88 -0.15 0.20 16 17 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 18 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 20 N -0.89 -27.35 13.29 55.43 0.74 -26.62 16 21 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C 0.53 9.16 6.94 -10.72 -0.07 9.08 16 26 O -0.47 -9.22 17.77 5.59 0.10 -9.12 16 27 H 0.06 0.44 3.73 -51.93 -0.19 0.25 16 28 H 0.07 0.55 6.98 -51.93 -0.36 0.19 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 37 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 38 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.44 4.67 4.72 -40.82 -0.19 4.47 16 40 H 0.08 1.84 7.86 -51.93 -0.41 1.44 16 41 H 0.08 1.74 8.01 -51.93 -0.42 1.33 16 42 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 342.77 15.07 5.17 5.17 Total: -1.00 -33.83 342.77 -8.14 -41.97 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -6.90 Total: -0.29 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: -1.77 Total: 4.76 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.19 Total: -47.72 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: 0.19 Total: -20.85 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -33.83 -8.14 -41.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128058160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.487 kcal (2) G-P(sol) polarization free energy of solvation -33.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.319 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds