Wall clock time and date at job start Tue Mar 31 2020 06:54:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.47642 * 2 1 4 4 C 1.52997 * 109.47688 * 239.98393 * 2 1 3 5 5 C 1.53010 * 109.56408 * 300.40151 * 4 2 1 6 6 H 1.09001 * 109.47786 * 59.58397 * 5 4 2 7 7 C 1.52996 * 109.49081 * 179.60979 * 5 4 2 8 8 C 1.53091 * 109.41317 * 299.59989 * 5 4 2 9 9 C 1.52469 * 109.52511 * 59.17216 * 8 5 4 10 10 C 1.52477 * 110.72509 * 301.24805 * 9 8 5 11 11 N 1.46854 * 110.49013 * 63.98981 * 9 8 5 12 12 C 1.34669 * 106.41849 * 118.55312 * 11 9 8 13 13 O 1.21538 * 123.79438 * 179.97438 * 12 11 9 14 14 N 1.33869 * 112.42146 * 0.02562 * 12 11 9 15 15 C 1.46498 * 124.19469 * 179.97438 * 14 12 11 16 16 C 1.53004 * 109.47138 * 90.02152 * 15 14 12 17 17 C 1.50708 * 109.47050 * 179.97438 * 16 15 14 18 18 H 1.07997 * 120.00011 * 0.02562 * 17 16 15 19 19 C 1.37872 * 119.99673 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00572 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99585 * 180.02562 * 19 17 16 22 22 H 1.48497 * 109.47068 * 270.00051 * 21 19 17 23 23 H 1.48497 * 109.47295 * 30.00090 * 21 19 17 24 24 H 1.48499 * 109.47084 * 150.00157 * 21 19 17 25 25 C 1.34912 * 111.60968 * 0.22443 * 14 12 11 26 26 O 1.21236 * 127.25530 * 179.76639 * 25 14 12 27 27 H 1.09001 * 109.47234 * 152.52319 * 1 2 3 28 28 H 1.09003 * 109.47185 * 272.52316 * 1 2 3 29 29 H 1.08997 * 109.47540 * 32.52182 * 1 2 3 30 30 H 1.09000 * 109.45383 * 180.38123 * 4 2 1 31 31 H 1.08996 * 109.44572 * 60.42491 * 4 2 1 32 32 H 1.08998 * 109.47234 * 179.97438 * 7 5 4 33 33 H 1.09006 * 109.47254 * 299.94840 * 7 5 4 34 34 H 1.09001 * 109.47263 * 59.94577 * 7 5 4 35 35 H 1.08997 * 109.46752 * 299.15302 * 8 5 4 36 36 H 1.09005 * 109.45014 * 179.18163 * 8 5 4 37 37 H 1.09005 * 109.46499 * 178.76133 * 10 9 8 38 38 H 1.09005 * 109.46131 * 298.72797 * 10 9 8 39 39 H 0.96999 * 126.79512 * 298.54137 * 11 9 8 40 40 H 1.09005 * 109.47497 * 330.02306 * 15 14 12 41 41 H 1.09005 * 109.47536 * 210.02363 * 15 14 12 42 42 H 1.08999 * 109.46876 * 60.00412 * 16 15 14 43 43 H 1.08998 * 109.47159 * 299.99813 * 16 15 14 44 44 H 0.96997 * 120.00173 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7216 -1.2490 5 6 1.5231 -2.1616 -1.2558 6 1 0.4331 -2.1565 -1.2526 7 6 2.0262 -2.8787 -2.5102 8 6 2.0340 -2.8916 -0.0109 9 6 1.5504 -2.1660 1.2397 10 6 2.0407 -0.7222 1.2495 11 7 0.0851 -2.2117 1.3264 12 6 -0.2086 -2.8714 2.4631 13 8 -1.3417 -3.0891 2.8448 14 7 0.8878 -3.2595 3.1261 15 6 0.8667 -3.9948 4.3929 16 6 0.8563 -5.4984 4.1097 17 6 0.8352 -6.2549 5.4130 18 1 0.8294 -5.7171 6.3495 19 6 0.8223 -7.6336 5.4096 20 7 0.8289 -8.2885 4.2692 21 14 0.7955 -8.5712 7.0251 22 1 2.1883 -8.8328 7.4687 23 1 0.0915 -7.7646 8.0540 24 1 0.0854 -9.8618 6.8366 25 6 2.0145 -2.8846 2.4856 26 8 3.1582 -3.0844 2.8346 27 1 -0.3634 -0.9117 -0.4742 28 1 -0.3634 0.0452 1.0267 29 1 -0.3634 0.8665 -0.5525 30 1 3.1301 -0.7273 -1.2452 31 1 1.6829 -0.2033 -2.1388 32 1 1.6581 -3.9046 -2.5146 33 1 1.6623 -2.3588 -3.3965 34 1 3.1162 -2.8833 -2.5137 35 1 3.1238 -2.9095 -0.0219 36 1 1.6541 -3.9133 -0.0078 37 1 1.6657 -0.2172 2.1397 38 1 3.1307 -0.7089 1.2566 39 1 -0.5463 -1.8401 0.6907 40 1 -0.0273 -3.7248 4.9550 41 1 1.7525 -3.7409 4.9753 42 1 1.7503 -5.7685 3.5477 43 1 -0.0295 -5.7523 3.5275 44 1 0.8202 -9.2585 4.2669 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128058160.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:54:07 Heat of formation + Delta-G solvation = -76.982089 kcal Electronic energy + Delta-G solvation = -25236.652206 eV Core-core repulsion = 21767.420662 eV Total energy + Delta-G solvation = -3469.231544 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.87525 -40.20659 -39.66431 -37.06007 -36.30672 -34.85397 -34.11849 -31.86469 -31.62226 -27.94170 -27.46163 -27.30197 -25.25706 -24.05739 -22.67212 -22.44805 -21.22148 -20.03091 -18.91289 -18.60498 -17.64859 -17.51266 -16.67609 -16.58428 -16.38336 -16.25139 -15.79831 -15.35589 -14.99498 -14.93061 -14.73285 -14.41659 -14.34014 -13.95637 -13.62398 -13.46969 -12.92513 -12.90050 -12.77659 -12.64789 -12.55337 -12.35458 -12.22351 -12.10795 -12.04590 -11.88505 -11.69102 -11.44829 -11.35822 -11.09112 -10.79594 -10.70083 -10.63759 -10.32705 -8.27343 -6.40939 0.52823 1.22438 1.39552 1.41778 1.53184 1.94675 2.14438 2.38415 2.86277 3.06852 3.40642 3.51379 3.86888 3.92151 3.99675 4.06144 4.18252 4.30397 4.37620 4.43036 4.44456 4.52812 4.61372 4.68314 4.70195 4.75037 4.87952 4.93332 4.95886 4.99766 5.11694 5.15765 5.25436 5.31715 5.37239 5.38750 5.42182 5.44713 5.56775 5.68789 5.77044 6.04693 6.09572 6.35296 6.72841 7.07951 7.29129 8.85713 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.025260 B = 0.004023 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.218605 B = 6958.020364 C = 7228.961780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.080 4.080 3 H 0.103 0.897 4 C -0.108 4.108 5 C -0.087 4.087 6 H 0.077 0.923 7 C -0.146 4.146 8 C -0.110 4.110 9 C 0.138 3.862 10 C -0.106 4.106 11 N -0.700 5.700 12 C 0.692 3.308 13 O -0.582 6.582 14 N -0.581 5.581 15 C 0.132 3.868 16 C 0.026 3.974 17 C -0.546 4.546 18 H 0.071 0.929 19 C 0.001 3.999 20 N -0.933 5.933 21 Si 0.976 3.024 22 H -0.269 1.269 23 H -0.259 1.259 24 H -0.281 1.281 25 C 0.518 3.482 26 O -0.495 6.495 27 H 0.061 0.939 28 H 0.053 0.947 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.089 0.911 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.061 0.939 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.072 0.928 38 H 0.096 0.904 39 H 0.449 0.551 40 H 0.086 0.914 41 H 0.090 0.910 42 H -0.011 1.011 43 H -0.012 1.012 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.780 20.048 -14.897 25.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.098 4.098 3 H 0.121 0.879 4 C -0.145 4.145 5 C -0.106 4.106 6 H 0.095 0.905 7 C -0.203 4.203 8 C -0.148 4.148 9 C 0.048 3.952 10 C -0.145 4.145 11 N -0.373 5.373 12 C 0.393 3.607 13 O -0.459 6.459 14 N -0.325 5.325 15 C 0.012 3.988 16 C -0.012 4.012 17 C -0.584 4.584 18 H 0.090 0.910 19 C -0.197 4.197 20 N -0.572 5.572 21 Si 0.799 3.201 22 H -0.194 1.194 23 H -0.183 1.183 24 H -0.206 1.206 25 C 0.307 3.693 26 O -0.366 6.366 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.098 0.902 30 H 0.094 0.906 31 H 0.107 0.893 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.071 0.929 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.304 0.696 40 H 0.104 0.896 41 H 0.109 0.891 42 H 0.008 0.992 43 H 0.006 0.994 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.792 19.625 -14.508 24.564 hybrid contribution -0.399 -1.213 0.767 1.490 sum 2.393 18.411 -13.741 23.098 Atomic orbital electron populations 1.22338 0.95612 1.02466 1.02111 1.21115 0.95696 1.00292 0.92746 0.87851 1.21689 1.01579 0.93302 0.97937 1.21207 1.00825 0.95779 0.92758 0.90459 1.21799 1.01706 0.99918 0.96881 1.21800 1.02659 0.98358 0.92002 1.21166 0.81018 0.99427 0.93608 1.21847 1.02639 0.89171 1.00798 1.46512 1.07839 1.59489 1.23442 1.16295 0.83773 0.78518 0.82103 1.90950 1.21175 1.61826 1.71965 1.46799 1.08571 1.52270 1.24864 1.21742 1.03323 0.92070 0.81688 1.19164 0.94660 0.90476 0.96924 1.21465 1.51782 0.92229 0.92973 0.91045 1.26056 0.94077 0.98870 1.00710 1.70117 1.50897 1.08256 1.27972 0.85293 0.78683 0.77596 0.78549 1.19424 1.18312 1.20620 1.21460 0.84337 0.77649 0.85866 1.90736 1.19398 1.55339 1.71170 0.92024 0.92784 0.90202 0.90592 0.89293 0.93685 0.90708 0.92037 0.88863 0.92937 0.90941 0.88559 0.69565 0.89598 0.89147 0.99233 0.99399 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.82 7.57 71.98 0.55 -1.27 16 2 C -0.08 -0.84 3.20 -10.76 -0.03 -0.88 16 3 H 0.10 0.74 8.14 -2.39 -0.02 0.73 16 4 C -0.11 -1.02 4.72 30.60 0.14 -0.87 16 5 C -0.09 -1.22 2.39 -10.76 -0.03 -1.25 16 6 H 0.08 1.06 5.57 -2.39 -0.01 1.05 16 7 C -0.15 -1.87 9.20 71.98 0.66 -1.21 16 8 C -0.11 -2.36 4.28 30.45 0.13 -2.23 16 9 C 0.14 3.37 0.83 2.58 0.00 3.37 16 10 C -0.11 -1.81 4.49 30.45 0.14 -1.67 16 11 N -0.70 -18.18 4.30 -442.72 -1.90 -20.08 16 12 C 0.69 26.11 8.63 179.37 1.55 27.66 16 13 O -0.58 -26.36 17.48 -3.83 -0.07 -26.43 16 14 N -0.58 -23.37 2.61 -773.23 -2.02 -25.39 16 15 C 0.13 6.12 5.65 86.38 0.49 6.61 16 16 C 0.03 1.47 5.30 29.85 0.16 1.63 16 17 C -0.55 -32.37 9.11 25.60 0.23 -32.14 16 18 H 0.07 3.96 7.74 -2.91 -0.02 3.94 16 19 C 0.00 0.07 5.46 84.65 0.46 0.53 16 20 N -0.93 -58.90 13.29 21.45 0.28 -58.61 16 21 Si 0.98 45.38 29.54 68.60 2.03 47.41 16 22 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 23 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 25 C 0.52 18.46 6.94 87.77 0.61 19.07 16 26 O -0.49 -20.07 17.77 -2.90 -0.05 -20.12 16 27 H 0.06 0.69 3.73 -2.39 -0.01 0.68 16 28 H 0.05 0.75 6.98 -2.39 -0.02 0.74 16 29 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.04 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 36 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 37 H 0.07 1.30 8.10 -2.38 -0.02 1.28 16 38 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.45 9.15 4.72 -92.71 -0.44 8.71 16 40 H 0.09 3.91 7.86 -2.38 -0.02 3.89 16 41 H 0.09 3.98 8.01 -2.38 -0.02 3.96 16 42 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 43 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 44 H 0.27 15.64 8.31 -92.71 -0.77 14.87 16 Total: -1.00 -76.76 342.77 3.89 -72.87 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: 0.56 Total: 13.01 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: 5.06 Total: 17.35 kcal Atomic # 7 Polarization: -100.45 SS G_CDS: -3.64 Total: -104.08 kcal Atomic # 8 Polarization: -46.43 SS G_CDS: -0.12 Total: -46.55 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -76.76 3.89 -72.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128058160.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.111 kcal (2) G-P(sol) polarization free energy of solvation -76.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.871 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds