Wall clock time and date at job start Tue Mar 31 2020 07:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.49197 * 2 1 4 4 C 1.53049 * 109.48659 * 239.95666 * 2 1 3 5 5 N 1.46961 * 109.36269 * 181.61462 * 4 2 1 6 6 C 1.46900 * 110.99713 * 183.18873 * 5 4 2 7 7 C 1.53004 * 109.46925 * 169.99759 * 6 5 4 8 8 C 1.53001 * 109.47274 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47238 * 179.97438 * 8 7 6 10 10 H 1.08003 * 120.00466 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99935 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00299 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00018 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47092 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47255 * 120.00359 * 13 11 9 16 16 H 1.48507 * 109.47219 * 240.00330 * 13 11 9 17 17 C 1.46951 * 110.88355 * 59.31763 * 5 4 2 18 18 C 1.53049 * 109.36617 * 300.68031 * 17 5 4 19 19 N 1.46957 * 109.36577 * 58.39938 * 18 17 5 20 20 C 1.46894 * 111.00284 * 176.81308 * 19 18 17 21 21 C 1.53002 * 109.47100 * 47.38074 * 20 19 18 22 22 F 1.39895 * 109.46906 * 53.48011 * 21 20 19 23 23 F 1.39903 * 109.46641 * 173.48008 * 21 20 19 24 24 F 1.39898 * 109.46988 * 293.47748 * 21 20 19 25 25 H 1.08997 * 109.47461 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46925 * 300.04860 * 1 2 3 27 27 H 1.09000 * 109.46704 * 60.03948 * 1 2 3 28 28 H 1.08993 * 109.49057 * 61.64511 * 4 2 1 29 29 H 1.09006 * 109.50846 * 301.58417 * 4 2 1 30 30 H 1.09002 * 109.47531 * 49.99833 * 6 5 4 31 31 H 1.08997 * 109.47488 * 289.99355 * 6 5 4 32 32 H 1.09006 * 109.47236 * 299.99859 * 7 6 5 33 33 H 1.09000 * 109.47682 * 59.99573 * 7 6 5 34 34 H 1.08996 * 109.46982 * 300.00105 * 8 7 6 35 35 H 1.09004 * 109.46842 * 59.99740 * 8 7 6 36 36 H 0.96997 * 120.00781 * 179.97438 * 12 11 9 37 37 H 1.08995 * 109.48778 * 60.64734 * 17 5 4 38 38 H 1.08997 * 109.49069 * 180.71249 * 17 5 4 39 39 H 1.09004 * 109.49045 * 298.43403 * 18 17 5 40 40 H 1.09002 * 109.49235 * 178.36858 * 18 17 5 41 41 H 1.08998 * 109.47031 * 167.38482 * 20 19 18 42 42 H 1.09002 * 109.47109 * 287.37677 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7224 -1.2490 5 7 3.5096 -0.7547 -1.2268 6 6 4.0410 -1.3743 -2.4482 7 6 5.5560 -1.1684 -2.5069 8 6 6.1095 -1.8143 -3.7786 9 6 7.6016 -1.6110 -3.8368 10 1 8.1049 -1.0750 -3.0457 11 6 8.3244 -2.1100 -4.8996 12 7 7.7118 -2.7631 -5.8627 13 14 10.1741 -1.8586 -4.9713 14 1 10.6171 -1.0984 -3.7750 15 1 10.8526 -3.1793 -4.9974 16 1 10.5231 -1.0985 -6.1985 17 6 4.0003 -1.4484 -0.0279 18 6 3.4898 -0.7260 1.2211 19 7 2.0207 -0.6937 1.1990 20 6 1.4893 -0.0741 2.4203 21 6 2.2431 1.2274 2.7013 22 9 2.2027 2.0441 1.5662 23 9 1.6416 1.8919 3.7756 24 9 3.5740 0.9362 3.0192 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5146 0.8896 27 1 -0.3633 0.5132 -0.8904 28 1 1.7018 -0.1928 -2.1393 29 1 1.6547 -1.7417 -1.2632 30 1 3.5776 -0.9136 -3.3206 31 1 3.8195 -2.4415 -2.4401 32 1 5.7776 -0.1011 -2.5150 33 1 6.0195 -1.6290 -1.6345 34 1 5.8880 -2.8815 -3.7701 35 1 5.6461 -1.3540 -4.6513 36 1 8.2202 -3.1139 -6.6106 37 1 3.6366 -2.4759 -0.0279 38 1 5.0903 -1.4481 -0.0281 39 1 3.8757 0.2933 1.2350 40 1 3.8285 -1.2556 2.1115 41 1 0.4293 0.1415 2.2866 42 1 1.6181 -0.7571 3.2599 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128146839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:34 Heat of formation + Delta-G solvation = -144.170137 kcal Electronic energy + Delta-G solvation = -24992.123847 eV Core-core repulsion = 20978.122071 eV Total energy + Delta-G solvation = -4014.001777 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.46397 -47.91650 -47.89904 -39.68881 -36.41224 -33.64519 -32.73855 -31.58303 -29.82528 -27.31702 -26.83247 -24.75465 -23.12809 -23.07593 -21.56569 -20.16743 -19.80981 -18.86576 -18.74529 -17.34883 -16.40923 -16.08268 -15.69098 -15.58151 -14.86168 -14.76260 -14.52823 -14.46051 -14.37185 -14.20332 -13.99198 -13.90654 -13.71402 -13.34024 -12.96964 -12.58886 -12.32244 -12.23400 -12.12037 -11.92515 -11.59931 -11.32015 -11.08084 -10.97699 -10.81149 -10.76551 -10.47077 -10.37881 -9.58930 -9.30966 -9.02513 -8.77754 -8.32444 -8.07623 -5.97589 -3.99414 2.49573 3.22917 3.32860 3.40234 3.44926 3.53238 3.71902 3.97842 4.06025 4.49038 4.55335 4.63374 4.82783 4.98917 5.10737 5.22463 5.30837 5.36926 5.38494 5.42582 5.51176 5.64105 5.74922 5.79722 5.87869 5.99510 6.01676 6.09950 6.32802 6.48443 6.62127 6.71847 6.79357 7.13457 7.33829 7.38511 7.71244 7.85927 8.03095 8.46621 9.08085 9.64588 11.13920 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.026654 B = 0.003134 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.250831 B = 8930.785207 C = 9581.395147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.056 3.944 3 H 0.078 0.922 4 C 0.064 3.936 5 N -0.542 5.542 6 C 0.058 3.942 7 C -0.105 4.105 8 C 0.022 3.978 9 C -0.517 4.517 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.056 3.944 18 C 0.037 3.963 19 N -0.516 5.516 20 C 0.009 3.991 21 C 0.413 3.587 22 F -0.179 7.179 23 F -0.189 7.189 24 F -0.180 7.180 25 H 0.065 0.935 26 H 0.055 0.945 27 H 0.067 0.933 28 H 0.080 0.920 29 H 0.039 0.961 30 H 0.070 0.930 31 H 0.030 0.970 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.013 0.987 35 H 0.015 0.985 36 H 0.259 0.741 37 H 0.040 0.960 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.086 0.914 41 H 0.123 0.877 42 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.099 5.699 17.892 25.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.051 4.051 3 H 0.096 0.904 4 C -0.065 4.065 5 N -0.266 5.266 6 C -0.069 4.069 7 C -0.143 4.143 8 C -0.016 4.016 9 C -0.555 4.555 10 H 0.074 0.926 11 C -0.145 4.145 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.211 1.211 16 H -0.210 1.210 17 C -0.073 4.073 18 C -0.090 4.090 19 N -0.239 5.239 20 C -0.122 4.122 21 C 0.356 3.644 22 F -0.160 7.160 23 F -0.171 7.171 24 F -0.162 7.162 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.099 0.901 29 H 0.058 0.942 30 H 0.088 0.912 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.032 0.968 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.058 0.942 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.104 0.896 41 H 0.141 0.859 42 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -17.036 5.614 17.697 25.197 hybrid contribution 1.181 0.273 -0.067 1.214 sum -15.855 5.887 17.630 24.431 Atomic orbital electron populations 1.21916 0.93940 1.02722 1.01976 1.22214 0.95309 0.98297 0.89327 0.90432 1.22135 0.88511 0.99231 0.96585 1.62220 1.07056 1.54340 1.02995 1.22277 0.98002 0.96246 0.90372 1.21657 0.91047 1.01064 1.00502 1.19074 0.95482 0.95588 0.91449 1.21292 0.92867 1.34969 1.06404 0.92636 1.25030 0.98466 0.95301 0.95749 1.69973 1.35574 1.37543 1.10551 0.86551 0.85757 0.77824 0.77965 1.19720 1.21064 1.21029 1.22187 1.00972 0.95445 0.88652 1.22767 0.85332 1.01625 0.99248 1.62421 1.10215 1.50763 1.00496 1.23888 1.01336 0.89657 0.97277 1.22369 0.79005 0.88881 0.74098 1.93128 1.96317 1.75931 1.50656 1.93178 1.83239 1.83390 1.57301 1.93179 1.37069 1.93197 1.92721 0.91548 0.92586 0.91374 0.90149 0.94229 0.91169 0.95186 0.92625 0.93477 0.96824 0.96625 0.93114 0.94152 0.89098 0.92091 0.89580 0.85866 0.86134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 8.93 37.16 0.33 -0.82 16 2 C 0.06 0.59 2.21 -67.65 -0.15 0.44 16 3 H 0.08 0.93 5.42 -51.93 -0.28 0.65 16 4 C 0.06 0.80 4.89 -3.77 -0.02 0.78 16 5 N -0.54 -8.18 4.71 -234.47 -1.10 -9.28 16 6 C 0.06 1.01 4.96 -3.82 -0.02 0.99 16 7 C -0.10 -2.19 5.09 -26.73 -0.14 -2.33 16 8 C 0.02 0.56 4.97 -27.89 -0.14 0.43 16 9 C -0.52 -14.85 9.11 -34.44 -0.31 -15.16 16 10 H 0.06 1.56 7.74 -52.48 -0.41 1.15 16 11 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 12 N -0.90 -27.22 13.29 55.43 0.74 -26.49 16 13 Si 0.89 21.91 29.54 -169.99 -5.02 16.89 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 17 C 0.06 0.77 5.41 -3.77 -0.02 0.75 16 18 C 0.04 0.43 4.16 -3.77 -0.02 0.42 16 19 N -0.52 -5.22 4.73 -226.49 -1.07 -6.29 16 20 C 0.01 0.07 5.59 -3.83 -0.02 0.05 16 21 C 0.41 3.96 2.82 37.16 0.10 4.06 16 22 F -0.18 -2.02 13.78 2.25 0.03 -1.99 16 23 F -0.19 -1.81 17.32 2.25 0.04 -1.77 16 24 F -0.18 -1.97 13.97 2.25 0.03 -1.94 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.36 6.04 -51.93 -0.31 0.05 16 27 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 29 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 1.22 8.03 -51.93 -0.42 0.80 16 31 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 0.97 6.49 -51.93 -0.34 0.63 16 34 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 37 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.09 1.34 6.34 -51.93 -0.33 1.02 16 39 H 0.06 0.79 5.50 -51.93 -0.29 0.51 16 40 H 0.09 0.88 7.92 -51.93 -0.41 0.47 16 41 H 0.12 0.72 5.48 -51.93 -0.28 0.44 16 42 H 0.12 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 330.84 15.07 4.99 4.99 Total: -1.00 -30.84 330.84 -8.29 -39.13 By element: Atomic # 1 Polarization: 2.06 SS G_CDS: -6.42 Total: -4.36 kcal Atomic # 6 Polarization: -8.38 SS G_CDS: -0.49 Total: -8.87 kcal Atomic # 7 Polarization: -40.62 SS G_CDS: -1.44 Total: -42.06 kcal Atomic # 9 Polarization: -5.81 SS G_CDS: 0.10 Total: -5.71 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.84 -8.29 -39.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128146839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.038 kcal (2) G-P(sol) polarization free energy of solvation -30.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds