Wall clock time and date at job start Tue Mar 31 2020 07:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08995 * 109.49197 * 2 1 4 4 C 1.53049 * 109.48659 * 239.95666 * 2 1 3 5 5 N 1.46961 * 109.36269 * 181.61462 * 4 2 1 6 6 C 1.46900 * 110.99713 * 183.18873 * 5 4 2 7 7 C 1.53004 * 109.46925 * 169.99759 * 6 5 4 8 8 C 1.53001 * 109.47274 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47238 * 179.97438 * 8 7 6 10 10 H 1.08003 * 120.00466 * 0.02562 * 9 8 7 11 11 C 1.37877 * 119.99935 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00299 * 0.02562 * 11 9 8 13 13 Si 1.86803 * 120.00018 * 180.02562 * 11 9 8 14 14 H 1.48502 * 109.47092 * 0.02562 * 13 11 9 15 15 H 1.48502 * 109.47255 * 120.00359 * 13 11 9 16 16 H 1.48507 * 109.47219 * 240.00330 * 13 11 9 17 17 C 1.46951 * 110.88355 * 59.31763 * 5 4 2 18 18 C 1.53049 * 109.36617 * 300.68031 * 17 5 4 19 19 N 1.46957 * 109.36577 * 58.39938 * 18 17 5 20 20 C 1.46894 * 111.00284 * 176.81308 * 19 18 17 21 21 C 1.53002 * 109.47100 * 47.38074 * 20 19 18 22 22 F 1.39895 * 109.46906 * 53.48011 * 21 20 19 23 23 F 1.39903 * 109.46641 * 173.48008 * 21 20 19 24 24 F 1.39898 * 109.46988 * 293.47748 * 21 20 19 25 25 H 1.08997 * 109.47461 * 180.02562 * 1 2 3 26 26 H 1.09007 * 109.46925 * 300.04860 * 1 2 3 27 27 H 1.09000 * 109.46704 * 60.03948 * 1 2 3 28 28 H 1.08993 * 109.49057 * 61.64511 * 4 2 1 29 29 H 1.09006 * 109.50846 * 301.58417 * 4 2 1 30 30 H 1.09002 * 109.47531 * 49.99833 * 6 5 4 31 31 H 1.08997 * 109.47488 * 289.99355 * 6 5 4 32 32 H 1.09006 * 109.47236 * 299.99859 * 7 6 5 33 33 H 1.09000 * 109.47682 * 59.99573 * 7 6 5 34 34 H 1.08996 * 109.46982 * 300.00105 * 8 7 6 35 35 H 1.09004 * 109.46842 * 59.99740 * 8 7 6 36 36 H 0.96997 * 120.00781 * 179.97438 * 12 11 9 37 37 H 1.08995 * 109.48778 * 60.64734 * 17 5 4 38 38 H 1.08997 * 109.49069 * 180.71249 * 17 5 4 39 39 H 1.09004 * 109.49045 * 298.43403 * 18 17 5 40 40 H 1.09002 * 109.49235 * 178.36858 * 18 17 5 41 41 H 1.08998 * 109.47031 * 167.38482 * 20 19 18 42 42 H 1.09002 * 109.47109 * 287.37677 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7224 -1.2490 5 7 3.5096 -0.7547 -1.2268 6 6 4.0410 -1.3743 -2.4482 7 6 5.5560 -1.1684 -2.5069 8 6 6.1095 -1.8143 -3.7786 9 6 7.6016 -1.6110 -3.8368 10 1 8.1049 -1.0750 -3.0457 11 6 8.3244 -2.1100 -4.8996 12 7 7.7118 -2.7631 -5.8627 13 14 10.1741 -1.8586 -4.9713 14 1 10.6171 -1.0984 -3.7750 15 1 10.8526 -3.1793 -4.9974 16 1 10.5231 -1.0985 -6.1985 17 6 4.0003 -1.4484 -0.0279 18 6 3.4898 -0.7260 1.2211 19 7 2.0207 -0.6937 1.1990 20 6 1.4893 -0.0741 2.4203 21 6 2.2431 1.2274 2.7013 22 9 2.2027 2.0441 1.5662 23 9 1.6416 1.8919 3.7756 24 9 3.5740 0.9362 3.0192 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5146 0.8896 27 1 -0.3633 0.5132 -0.8904 28 1 1.7018 -0.1928 -2.1393 29 1 1.6547 -1.7417 -1.2632 30 1 3.5776 -0.9136 -3.3206 31 1 3.8195 -2.4415 -2.4401 32 1 5.7776 -0.1011 -2.5150 33 1 6.0195 -1.6290 -1.6345 34 1 5.8880 -2.8815 -3.7701 35 1 5.6461 -1.3540 -4.6513 36 1 8.2202 -3.1139 -6.6106 37 1 3.6366 -2.4759 -0.0279 38 1 5.0903 -1.4481 -0.0281 39 1 3.8757 0.2933 1.2350 40 1 3.8285 -1.2556 2.1115 41 1 0.4293 0.1415 2.2866 42 1 1.6181 -0.7571 3.2599 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128146839.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:33 Heat of formation + Delta-G solvation = -164.740448 kcal Electronic energy + Delta-G solvation = -24993.015843 eV Core-core repulsion = 20978.122071 eV Total energy + Delta-G solvation = -4014.893772 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -51.23479 -48.70228 -48.67065 -40.64463 -37.60838 -35.55438 -33.68427 -33.26558 -30.95068 -28.47328 -28.11526 -26.09722 -24.46508 -23.91052 -22.96143 -21.43484 -21.08794 -19.63609 -19.52512 -18.49502 -18.12345 -17.10484 -16.67947 -16.59156 -16.40031 -16.02286 -15.64035 -15.52695 -15.32325 -15.06188 -14.98514 -14.86088 -14.66984 -14.43654 -14.30565 -13.84255 -13.55880 -13.33451 -13.19581 -12.92744 -12.83351 -12.69183 -12.59218 -12.51533 -12.34719 -11.93021 -11.83476 -11.72027 -11.38394 -11.33047 -11.00838 -10.55655 -9.63231 -9.27398 -8.20550 -6.31393 1.39648 1.39862 1.53573 1.79058 2.40571 2.45912 2.82437 2.91294 3.02494 3.12537 3.25415 3.74999 3.88425 3.90485 4.16175 4.26302 4.31911 4.35304 4.41553 4.46669 4.52619 4.66686 4.71615 4.75117 4.81301 4.87738 4.97464 5.00443 5.06105 5.09087 5.25213 5.33081 5.51567 5.70149 5.73144 5.78150 5.85579 6.07708 6.16392 6.27582 6.85427 7.37819 8.91588 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.026654 B = 0.003134 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.250831 B = 8930.785207 C = 9581.395147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.058 3.942 3 H 0.064 0.936 4 C 0.062 3.938 5 N -0.550 5.550 6 C 0.071 3.929 7 C -0.089 4.089 8 C 0.027 3.973 9 C -0.542 4.542 10 H 0.057 0.943 11 C -0.001 4.001 12 N -0.933 5.933 13 Si 0.965 3.035 14 H -0.263 1.263 15 H -0.277 1.277 16 H -0.277 1.277 17 C 0.054 3.946 18 C 0.045 3.955 19 N -0.517 5.517 20 C 0.014 3.986 21 C 0.410 3.590 22 F -0.191 7.191 23 F -0.189 7.189 24 F -0.190 7.190 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.083 0.917 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.026 0.974 32 H 0.048 0.952 33 H 0.049 0.951 34 H -0.009 1.009 35 H -0.008 1.008 36 H 0.264 0.736 37 H 0.039 0.961 38 H 0.076 0.924 39 H 0.047 0.953 40 H 0.102 0.898 41 H 0.146 0.854 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.739 6.016 19.430 26.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.049 4.049 3 H 0.082 0.918 4 C -0.066 4.066 5 N -0.275 5.275 6 C -0.057 4.057 7 C -0.127 4.127 8 C -0.011 4.011 9 C -0.580 4.580 10 H 0.076 0.924 11 C -0.198 4.198 12 N -0.574 5.574 13 Si 0.789 3.211 14 H -0.187 1.187 15 H -0.202 1.202 16 H -0.203 1.203 17 C -0.074 4.074 18 C -0.082 4.082 19 N -0.240 5.240 20 C -0.116 4.116 21 C 0.354 3.646 22 F -0.173 7.173 23 F -0.171 7.171 24 F -0.172 7.172 25 H 0.089 0.911 26 H 0.092 0.908 27 H 0.092 0.908 28 H 0.102 0.898 29 H 0.058 0.942 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.009 0.991 35 H 0.010 0.990 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.094 0.906 39 H 0.065 0.935 40 H 0.120 0.880 41 H 0.164 0.836 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -17.694 5.940 19.255 26.816 hybrid contribution 1.347 0.185 -0.535 1.461 sum -16.347 6.124 18.720 25.596 Atomic orbital electron populations 1.21886 0.91491 1.03357 1.03207 1.22192 0.97145 0.97035 0.88575 0.91790 1.22235 0.86553 0.99629 0.98178 1.62167 1.08975 1.54096 1.02228 1.21979 0.95577 0.96215 0.91918 1.21391 0.93542 0.99870 0.97872 1.18963 0.94797 0.94318 0.93023 1.21710 0.94285 1.35228 1.06760 0.92427 1.25981 1.03886 0.94762 0.95219 1.70097 1.37747 1.38307 1.11220 0.85399 0.79192 0.78102 0.78357 1.18722 1.20224 1.20286 1.22196 1.00229 0.95689 0.89267 1.22649 0.86524 1.00574 0.98457 1.62405 1.09060 1.51100 1.01405 1.24091 1.01948 0.88792 0.96733 1.22712 0.78768 0.89456 0.73697 1.93109 1.96342 1.76463 1.51369 1.93178 1.83124 1.83511 1.57246 1.93160 1.38032 1.93238 1.92766 0.91144 0.90803 0.90800 0.89838 0.94229 0.91257 0.95595 0.93273 0.93199 0.99067 0.98958 0.92743 0.94290 0.90577 0.93503 0.87962 0.83601 0.83756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.93 71.98 0.64 -1.17 16 2 C 0.06 1.13 2.21 44.92 0.10 1.22 16 3 H 0.06 1.45 5.42 -2.39 -0.01 1.44 16 4 C 0.06 1.49 4.89 86.31 0.42 1.91 16 5 N -0.55 -16.50 4.71 -895.73 -4.22 -20.72 16 6 C 0.07 2.51 4.96 86.30 0.43 2.94 16 7 C -0.09 -3.81 5.09 30.60 0.16 -3.66 16 8 C 0.03 1.44 4.97 29.85 0.15 1.59 16 9 C -0.54 -31.66 9.11 25.60 0.23 -31.43 16 10 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 11 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 12 N -0.93 -57.57 13.29 21.45 0.28 -57.29 16 13 Si 0.97 45.03 29.54 68.60 2.03 47.06 16 14 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 15 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 16 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 17 C 0.05 1.49 5.41 86.31 0.47 1.96 16 18 C 0.05 1.00 4.16 86.31 0.36 1.36 16 19 N -0.52 -9.30 4.73 -870.49 -4.12 -13.42 16 20 C 0.01 0.18 5.59 86.31 0.48 0.66 16 21 C 0.41 7.08 2.82 71.98 0.20 7.29 16 22 F -0.19 -4.09 13.78 44.97 0.62 -3.47 16 23 F -0.19 -3.23 17.32 44.97 0.78 -2.46 16 24 F -0.19 -3.91 13.97 44.97 0.63 -3.28 16 25 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 26 H 0.07 0.69 6.04 -2.38 -0.01 0.68 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.08 1.93 8.07 -2.39 -0.02 1.91 16 29 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 30 H 0.07 2.45 8.03 -2.39 -0.02 2.43 16 31 H 0.03 0.93 8.12 -2.39 -0.02 0.91 16 32 H 0.05 2.15 8.14 -2.38 -0.02 2.13 16 33 H 0.05 2.09 6.49 -2.39 -0.02 2.08 16 34 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 35 H -0.01 -0.46 8.14 -2.38 -0.02 -0.48 16 36 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 37 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 2.27 6.34 -2.39 -0.02 2.26 16 39 H 0.05 1.18 5.50 -2.38 -0.01 1.17 16 40 H 0.10 1.90 7.92 -2.39 -0.02 1.88 16 41 H 0.15 1.13 5.48 -2.39 -0.01 1.12 16 42 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -66.90 330.84 1.11 -65.78 By element: Atomic # 1 Polarization: 3.72 SS G_CDS: 1.01 Total: 4.73 kcal Atomic # 6 Polarization: -21.03 SS G_CDS: 4.10 Total: -16.93 kcal Atomic # 7 Polarization: -83.38 SS G_CDS: -8.05 Total: -91.43 kcal Atomic # 9 Polarization: -11.24 SS G_CDS: 2.03 Total: -9.21 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -66.90 1.11 -65.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128146839.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.958 kcal (2) G-P(sol) polarization free energy of solvation -66.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds