Wall clock time and date at job start Tue Mar 31 2020 07:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.50234 * 2 1 4 4 C 1.53047 * 109.48726 * 120.05097 * 2 1 3 5 5 N 1.46955 * 109.36142 * 178.36686 * 4 2 1 6 6 C 1.46904 * 111.00044 * 176.81300 * 5 4 2 7 7 C 1.53003 * 109.47099 * 189.84529 * 6 5 4 8 8 C 1.53000 * 109.46978 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47249 * 180.02562 * 8 7 6 10 10 H 1.08005 * 120.00297 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00349 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99646 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00271 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46934 * 0.02562 * 13 11 9 15 15 H 1.48495 * 109.47011 * 120.00234 * 13 11 9 16 16 H 1.48505 * 109.47349 * 240.00275 * 13 11 9 17 17 C 1.46961 * 110.88230 * 300.68199 * 5 4 2 18 18 C 1.53047 * 109.36200 * 59.32261 * 17 5 4 19 19 N 1.46952 * 109.48733 * 239.94320 * 2 1 3 20 20 C 1.46907 * 110.99759 * 56.84664 * 19 2 1 21 21 C 1.53001 * 109.47343 * 51.23662 * 20 19 2 22 22 F 1.39897 * 109.47197 * 53.70740 * 21 20 19 23 23 F 1.39902 * 109.47117 * 173.70687 * 21 20 19 24 24 F 1.39899 * 109.46734 * 293.70822 * 21 20 19 25 25 H 1.09000 * 109.46714 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47123 * 300.05403 * 1 2 3 27 27 H 1.08996 * 109.47265 * 60.05513 * 1 2 3 28 28 H 1.09001 * 109.48733 * 58.40818 * 4 2 1 29 29 H 1.08997 * 109.49570 * 298.33649 * 4 2 1 30 30 H 1.08998 * 109.47271 * 69.84855 * 6 5 4 31 31 H 1.08991 * 109.47459 * 309.84883 * 6 5 4 32 32 H 1.08997 * 109.47189 * 60.00399 * 7 6 5 33 33 H 1.09003 * 109.47157 * 300.00129 * 7 6 5 34 34 H 1.09008 * 109.47186 * 60.00429 * 8 7 6 35 35 H 1.09000 * 109.47646 * 300.00600 * 8 7 6 36 36 H 0.97003 * 119.99691 * 179.97438 * 12 11 9 37 37 H 1.09003 * 109.48506 * 179.28910 * 17 5 4 38 38 H 1.08995 * 109.48696 * 299.35176 * 17 5 4 39 39 H 1.09002 * 109.49227 * 61.56590 * 18 17 5 40 40 H 1.09002 * 109.48771 * 181.63533 * 18 17 5 41 41 H 1.09000 * 109.47113 * 171.23794 * 20 19 2 42 42 H 1.08998 * 109.46827 * 291.23294 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0406 -0.7225 1.2489 5 7 3.5096 -0.7552 1.2264 6 6 4.0411 -1.3751 2.4476 7 6 5.5567 -1.1729 2.5041 8 6 6.1102 -1.8179 3.7764 9 6 7.6028 -1.6183 3.8324 10 1 8.1063 -1.0843 3.0401 11 6 8.3257 -2.1173 4.8951 12 7 7.7126 -2.7679 5.8597 13 14 10.1758 -1.8692 4.9649 14 1 10.6190 -1.1104 3.7678 15 1 10.5273 -1.1083 6.1907 16 1 10.8519 -3.1911 4.9920 17 6 3.9999 -1.4491 0.0273 18 6 3.4893 -0.7264 -1.2215 19 7 2.0203 -0.6939 -1.1991 20 6 1.4888 -0.0739 -2.4203 21 6 1.7439 1.4341 -2.3793 22 9 3.1038 1.6711 -2.1524 23 9 1.3686 2.0039 -3.6006 24 9 0.9923 2.0062 -1.3472 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5147 0.8895 27 1 -0.3633 0.5130 -0.8904 28 1 1.6545 -1.7417 1.2627 29 1 1.7022 -0.1929 2.1394 30 1 3.8169 -2.4417 2.4409 31 1 3.5801 -0.9125 3.3202 32 1 5.7810 -0.1063 2.5110 33 1 6.0178 -1.6356 1.6315 34 1 5.8859 -2.8847 3.7700 35 1 5.6490 -1.3550 4.6488 36 1 8.2213 -3.1193 6.6072 37 1 5.0900 -1.4490 0.0274 38 1 3.6360 -2.4765 0.0274 39 1 3.8756 0.2928 -1.2354 40 1 3.8277 -1.2561 -2.1120 41 1 1.9849 -0.5028 -3.2909 42 1 0.4167 -0.2595 -2.4849 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000128147025.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:37 Heat of formation + Delta-G solvation = -141.973742 kcal Electronic energy + Delta-G solvation = -25049.561478 eV Core-core repulsion = 21035.654944 eV Total energy + Delta-G solvation = -4013.906534 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.50796 -47.96946 -47.92854 -39.65800 -36.39390 -33.64344 -32.67485 -31.58883 -29.85922 -27.25825 -26.82437 -24.69100 -23.36532 -22.95812 -21.49326 -20.22419 -19.79326 -18.90964 -18.74308 -17.43683 -16.36903 -15.88848 -15.81754 -15.72776 -14.90828 -14.71634 -14.59704 -14.45206 -14.36220 -14.17333 -14.01126 -13.89029 -13.60922 -13.18226 -12.98431 -12.60011 -12.35835 -12.21569 -12.08401 -11.89774 -11.55338 -11.31563 -11.07849 -10.99268 -10.81314 -10.75361 -10.47572 -10.37564 -9.59063 -9.31026 -9.02536 -8.75867 -8.32580 -8.07175 -5.97768 -3.99577 2.48386 3.23347 3.32670 3.40049 3.44637 3.52221 3.70698 3.97234 4.06772 4.48847 4.58974 4.64294 4.85472 4.99786 5.09339 5.20578 5.36850 5.37599 5.38533 5.47521 5.57391 5.65405 5.74997 5.83306 5.90049 6.00649 6.02002 6.11450 6.32857 6.49583 6.62944 6.71858 6.79447 7.13469 7.34117 7.38737 7.71109 7.85837 8.02969 8.46430 9.07916 9.64402 11.13746 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.029877 B = 0.003048 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.959961 B = 9184.907346 C = 9668.613264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.061 3.939 3 H 0.070 0.930 4 C 0.063 3.937 5 N -0.542 5.542 6 C 0.058 3.942 7 C -0.105 4.105 8 C 0.022 3.978 9 C -0.517 4.517 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.891 3.109 14 H -0.273 1.273 15 H -0.284 1.284 16 H -0.284 1.284 17 C 0.057 3.943 18 C 0.028 3.972 19 N -0.516 5.516 20 C 0.016 3.984 21 C 0.412 3.588 22 F -0.177 7.177 23 F -0.190 7.190 24 F -0.178 7.178 25 H 0.063 0.937 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.040 0.960 29 H 0.080 0.920 30 H 0.030 0.970 31 H 0.070 0.930 32 H 0.055 0.945 33 H 0.047 0.953 34 H 0.013 0.987 35 H 0.015 0.985 36 H 0.259 0.741 37 H 0.091 0.909 38 H 0.039 0.961 39 H 0.074 0.926 40 H 0.082 0.918 41 H 0.118 0.882 42 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.871 5.712 -18.076 25.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.047 4.047 3 H 0.088 0.912 4 C -0.065 4.065 5 N -0.266 5.266 6 C -0.069 4.069 7 C -0.142 4.142 8 C -0.016 4.016 9 C -0.555 4.555 10 H 0.074 0.926 11 C -0.146 4.146 12 N -0.536 5.536 13 Si 0.719 3.281 14 H -0.197 1.197 15 H -0.210 1.210 16 H -0.211 1.211 17 C -0.072 4.072 18 C -0.099 4.099 19 N -0.239 5.239 20 C -0.116 4.116 21 C 0.355 3.645 22 F -0.159 7.159 23 F -0.171 7.171 24 F -0.159 7.159 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.058 0.942 29 H 0.098 0.902 30 H 0.048 0.952 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.065 0.935 34 H 0.032 0.968 35 H 0.034 0.966 36 H 0.069 0.931 37 H 0.109 0.891 38 H 0.057 0.943 39 H 0.092 0.908 40 H 0.100 0.900 41 H 0.136 0.864 42 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.817 5.631 -17.875 25.180 hybrid contribution 1.057 0.307 0.159 1.112 sum -15.760 5.938 -17.716 24.443 Atomic orbital electron populations 1.21973 0.93639 1.02458 1.02538 1.22215 0.95614 0.97500 0.89340 0.91190 1.22145 0.88495 0.99248 0.96626 1.62222 1.07056 1.54327 1.03010 1.22276 0.97991 0.96243 0.90396 1.21654 0.91036 1.01066 1.00491 1.19076 0.95481 0.95596 0.91453 1.21291 0.92825 1.35073 1.06342 0.92637 1.25033 0.98473 0.95314 0.95742 1.69980 1.35550 1.37587 1.10511 0.86547 0.85752 0.77815 0.77964 1.19722 1.21036 1.21062 1.22166 1.00917 0.95396 0.88694 1.22819 0.85486 1.02575 0.99034 1.62411 1.10316 1.50700 1.00491 1.23762 1.05759 0.84418 0.97619 1.22478 0.74239 0.94334 0.73450 1.93114 1.32975 1.95652 1.94132 1.93181 1.91250 1.87659 1.45038 1.93150 1.76275 1.87592 1.58917 0.91807 0.91553 0.92130 0.94199 0.90154 0.95196 0.91183 0.92627 0.93470 0.96826 0.96625 0.93117 0.89125 0.94262 0.90772 0.89984 0.86352 0.86007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.19 37.16 0.30 -0.97 16 2 C 0.06 0.66 1.91 -67.66 -0.13 0.53 16 3 H 0.07 0.87 5.58 -51.93 -0.29 0.58 16 4 C 0.06 0.81 4.89 -3.77 -0.02 0.79 16 5 N -0.54 -8.19 4.71 -234.47 -1.10 -9.29 16 6 C 0.06 1.01 4.96 -3.82 -0.02 0.99 16 7 C -0.10 -2.18 5.08 -26.73 -0.14 -2.32 16 8 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 9 C -0.52 -14.82 9.11 -34.44 -0.31 -15.14 16 10 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -27.21 13.29 55.43 0.74 -26.47 16 13 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 14 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 15 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 16 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 17 C 0.06 0.77 5.41 -3.77 -0.02 0.75 16 18 C 0.03 0.31 5.17 -3.77 -0.02 0.29 16 19 N -0.52 -5.20 4.73 -226.49 -1.07 -6.28 16 20 C 0.02 0.12 5.18 -3.82 -0.02 0.10 16 21 C 0.41 3.85 2.84 37.16 0.11 3.96 16 22 F -0.18 -2.01 13.81 2.25 0.03 -1.98 16 23 F -0.19 -1.79 17.32 2.25 0.04 -1.75 16 24 F -0.18 -1.83 12.11 2.25 0.03 -1.80 16 25 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 26 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.06 0.47 5.12 -51.93 -0.27 0.20 16 28 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.08 0.99 8.07 -51.93 -0.42 0.57 16 30 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 31 H 0.07 1.22 8.03 -51.93 -0.42 0.81 16 32 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 33 H 0.05 0.96 6.49 -51.93 -0.34 0.63 16 34 H 0.01 0.37 8.14 -51.92 -0.42 -0.05 16 35 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.09 1.32 6.33 -51.93 -0.33 0.99 16 38 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.92 5.23 -51.93 -0.27 0.65 16 40 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 41 H 0.12 0.67 7.98 -51.93 -0.41 0.26 16 42 H 0.12 0.70 6.78 -51.93 -0.35 0.35 16 LS Contribution 328.81 15.07 4.96 4.96 Total: -1.00 -30.79 328.81 -8.35 -39.13 By element: Atomic # 1 Polarization: 2.15 SS G_CDS: -6.44 Total: -4.29 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: -0.50 Total: -9.08 kcal Atomic # 7 Polarization: -40.60 SS G_CDS: -1.44 Total: -42.04 kcal Atomic # 9 Polarization: -5.63 SS G_CDS: 0.10 Total: -5.53 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.79 -8.35 -39.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128147025.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.842 kcal (2) G-P(sol) polarization free energy of solvation -30.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds