Wall clock time and date at job start Tue Mar 31 2020 07:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09004 * 109.50234 * 2 1 4 4 C 1.53047 * 109.48726 * 120.05097 * 2 1 3 5 5 N 1.46955 * 109.36142 * 178.36686 * 4 2 1 6 6 C 1.46904 * 111.00044 * 176.81300 * 5 4 2 7 7 C 1.53003 * 109.47099 * 189.84529 * 6 5 4 8 8 C 1.53000 * 109.46978 * 179.97438 * 7 6 5 9 9 C 1.50694 * 109.47249 * 180.02562 * 8 7 6 10 10 H 1.08005 * 120.00297 * 0.02562 * 9 8 7 11 11 C 1.37878 * 120.00349 * 180.02562 * 9 8 7 12 12 N 1.31517 * 119.99646 * 0.02562 * 11 9 8 13 13 Si 1.86801 * 120.00271 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.46934 * 0.02562 * 13 11 9 15 15 H 1.48495 * 109.47011 * 120.00234 * 13 11 9 16 16 H 1.48505 * 109.47349 * 240.00275 * 13 11 9 17 17 C 1.46961 * 110.88230 * 300.68199 * 5 4 2 18 18 C 1.53047 * 109.36200 * 59.32261 * 17 5 4 19 19 N 1.46952 * 109.48733 * 239.94320 * 2 1 3 20 20 C 1.46907 * 110.99759 * 56.84664 * 19 2 1 21 21 C 1.53001 * 109.47343 * 51.23662 * 20 19 2 22 22 F 1.39897 * 109.47197 * 53.70740 * 21 20 19 23 23 F 1.39902 * 109.47117 * 173.70687 * 21 20 19 24 24 F 1.39899 * 109.46734 * 293.70822 * 21 20 19 25 25 H 1.09000 * 109.46714 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47123 * 300.05403 * 1 2 3 27 27 H 1.08996 * 109.47265 * 60.05513 * 1 2 3 28 28 H 1.09001 * 109.48733 * 58.40818 * 4 2 1 29 29 H 1.08997 * 109.49570 * 298.33649 * 4 2 1 30 30 H 1.08998 * 109.47271 * 69.84855 * 6 5 4 31 31 H 1.08991 * 109.47459 * 309.84883 * 6 5 4 32 32 H 1.08997 * 109.47189 * 60.00399 * 7 6 5 33 33 H 1.09003 * 109.47157 * 300.00129 * 7 6 5 34 34 H 1.09008 * 109.47186 * 60.00429 * 8 7 6 35 35 H 1.09000 * 109.47646 * 300.00600 * 8 7 6 36 36 H 0.97003 * 119.99691 * 179.97438 * 12 11 9 37 37 H 1.09003 * 109.48506 * 179.28910 * 17 5 4 38 38 H 1.08995 * 109.48696 * 299.35176 * 17 5 4 39 39 H 1.09002 * 109.49227 * 61.56590 * 18 17 5 40 40 H 1.09002 * 109.48771 * 181.63533 * 18 17 5 41 41 H 1.09000 * 109.47113 * 171.23794 * 20 19 2 42 42 H 1.08998 * 109.46827 * 291.23294 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8940 1.0275 0.0000 4 6 2.0406 -0.7225 1.2489 5 7 3.5096 -0.7552 1.2264 6 6 4.0411 -1.3751 2.4476 7 6 5.5567 -1.1729 2.5041 8 6 6.1102 -1.8179 3.7764 9 6 7.6028 -1.6183 3.8324 10 1 8.1063 -1.0843 3.0401 11 6 8.3257 -2.1173 4.8951 12 7 7.7126 -2.7679 5.8597 13 14 10.1758 -1.8692 4.9649 14 1 10.6190 -1.1104 3.7678 15 1 10.5273 -1.1083 6.1907 16 1 10.8519 -3.1911 4.9920 17 6 3.9999 -1.4491 0.0273 18 6 3.4893 -0.7264 -1.2215 19 7 2.0203 -0.6939 -1.1991 20 6 1.4888 -0.0739 -2.4203 21 6 1.7439 1.4341 -2.3793 22 9 3.1038 1.6711 -2.1524 23 9 1.3686 2.0039 -3.6006 24 9 0.9923 2.0062 -1.3472 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5147 0.8895 27 1 -0.3633 0.5130 -0.8904 28 1 1.6545 -1.7417 1.2627 29 1 1.7022 -0.1929 2.1394 30 1 3.8169 -2.4417 2.4409 31 1 3.5801 -0.9125 3.3202 32 1 5.7810 -0.1063 2.5110 33 1 6.0178 -1.6356 1.6315 34 1 5.8859 -2.8847 3.7700 35 1 5.6490 -1.3550 4.6488 36 1 8.2213 -3.1193 6.6072 37 1 5.0900 -1.4490 0.0274 38 1 3.6360 -2.4765 0.0274 39 1 3.8756 0.2928 -1.2354 40 1 3.8277 -1.2561 -2.1120 41 1 1.9849 -0.5028 -3.2909 42 1 0.4167 -0.2595 -2.4849 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000128147025.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:09:36 Heat of formation + Delta-G solvation = -162.510704 kcal Electronic energy + Delta-G solvation = -25050.452028 eV Core-core repulsion = 21035.654944 eV Total energy + Delta-G solvation = -4014.797083 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -51.25678 -48.73938 -48.67197 -40.61752 -37.58864 -35.54861 -33.65368 -33.24537 -30.97274 -28.47662 -28.07838 -26.05017 -24.29958 -24.20357 -22.85864 -21.41120 -21.13262 -19.66208 -19.49530 -18.49105 -18.20255 -16.95776 -16.79108 -16.59896 -16.45584 -15.97643 -15.76220 -15.44545 -15.30475 -15.02473 -15.00657 -14.84031 -14.74283 -14.35984 -14.07418 -13.75471 -13.63214 -13.33150 -13.21255 -12.95321 -12.86196 -12.63351 -12.57377 -12.48777 -12.33323 -11.93070 -11.86473 -11.71085 -11.38397 -11.32890 -11.00630 -10.55486 -9.60993 -9.26731 -8.20363 -6.31206 1.39842 1.40265 1.53872 1.79741 2.40800 2.47293 2.82418 2.92187 3.03512 3.12802 3.26032 3.74757 3.90937 3.94110 4.15939 4.24329 4.33999 4.38264 4.41142 4.48297 4.55049 4.68268 4.71585 4.75181 4.81326 4.91107 4.98396 5.00494 5.05791 5.09098 5.25653 5.32336 5.51849 5.72397 5.73578 5.77812 5.85771 6.08134 6.16725 6.27614 6.85698 7.38029 8.91808 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.029877 B = 0.003048 C = 0.002895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.959961 B = 9184.907346 C = 9668.613264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.065 3.935 3 H 0.055 0.945 4 C 0.062 3.938 5 N -0.550 5.550 6 C 0.070 3.930 7 C -0.088 4.088 8 C 0.026 3.974 9 C -0.541 4.541 10 H 0.058 0.942 11 C -0.001 4.001 12 N -0.934 5.934 13 Si 0.966 3.034 14 H -0.263 1.263 15 H -0.278 1.278 16 H -0.277 1.277 17 C 0.055 3.945 18 C 0.034 3.966 19 N -0.518 5.518 20 C 0.020 3.980 21 C 0.409 3.591 22 F -0.191 7.191 23 F -0.190 7.190 24 F -0.185 7.185 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.072 0.928 28 H 0.040 0.960 29 H 0.081 0.919 30 H 0.026 0.974 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.051 0.949 34 H -0.009 1.009 35 H -0.009 1.009 36 H 0.264 0.736 37 H 0.077 0.923 38 H 0.037 0.963 39 H 0.063 0.937 40 H 0.105 0.895 41 H 0.142 0.858 42 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.236 5.932 -19.808 26.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.043 4.043 3 H 0.072 0.928 4 C -0.066 4.066 5 N -0.274 5.274 6 C -0.057 4.057 7 C -0.126 4.126 8 C -0.011 4.011 9 C -0.579 4.579 10 H 0.076 0.924 11 C -0.199 4.199 12 N -0.574 5.574 13 Si 0.790 3.210 14 H -0.187 1.187 15 H -0.203 1.203 16 H -0.202 1.202 17 C -0.074 4.074 18 C -0.094 4.094 19 N -0.240 5.240 20 C -0.111 4.111 21 C 0.353 3.647 22 F -0.173 7.173 23 F -0.171 7.171 24 F -0.166 7.166 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.091 0.909 28 H 0.058 0.942 29 H 0.099 0.901 30 H 0.044 0.956 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.009 0.991 35 H 0.010 0.990 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.055 0.945 39 H 0.081 0.919 40 H 0.123 0.877 41 H 0.160 0.840 42 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.199 5.860 -19.628 26.747 hybrid contribution 1.131 0.249 0.692 1.349 sum -16.068 6.109 -18.936 25.575 Atomic orbital electron populations 1.21934 0.91627 1.03068 1.03342 1.22152 0.97087 0.96204 0.88852 0.92758 1.22225 0.86735 0.99583 0.98066 1.62171 1.08781 1.54146 1.02352 1.21978 0.95640 0.96186 0.91914 1.21386 0.93435 0.99895 0.97895 1.18967 0.94825 0.94314 0.93029 1.21712 0.94215 1.35306 1.06705 0.92352 1.25990 1.03921 0.94774 0.95214 1.70106 1.37733 1.38377 1.11193 0.85391 0.79157 0.78096 0.78362 1.18652 1.20349 1.20225 1.22195 1.00273 0.95602 0.89282 1.22752 0.86388 1.01788 0.98427 1.62391 1.09455 1.50943 1.01235 1.23967 1.07366 0.82704 0.97035 1.22796 0.73497 0.95280 0.73166 1.93091 1.34169 1.95811 1.94228 1.93180 1.91170 1.87802 1.44979 1.93137 1.76333 1.87859 1.59311 0.91209 0.91276 0.90892 0.94200 0.90078 0.95620 0.91431 0.93255 0.93041 0.99082 0.99039 0.92762 0.90425 0.94484 0.91907 0.87666 0.83995 0.83653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.10 8.19 71.98 0.59 -1.51 16 2 C 0.06 1.31 1.91 44.92 0.09 1.40 16 3 H 0.05 1.29 5.58 -2.38 -0.01 1.28 16 4 C 0.06 1.53 4.89 86.31 0.42 1.95 16 5 N -0.55 -16.51 4.71 -895.73 -4.22 -20.73 16 6 C 0.07 2.51 4.96 86.30 0.43 2.94 16 7 C -0.09 -3.77 5.08 30.60 0.16 -3.61 16 8 C 0.03 1.42 4.97 29.85 0.15 1.57 16 9 C -0.54 -31.54 9.11 25.60 0.23 -31.31 16 10 H 0.06 3.28 7.74 -2.91 -0.02 3.26 16 11 C 0.00 -0.09 5.46 84.65 0.46 0.38 16 12 N -0.93 -57.59 13.29 21.45 0.28 -57.30 16 13 Si 0.97 44.92 29.54 68.60 2.03 46.95 16 14 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 15 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 16 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 17 C 0.05 1.46 5.41 86.31 0.47 1.93 16 18 C 0.03 0.70 5.17 86.31 0.45 1.15 16 19 N -0.52 -9.23 4.73 -870.47 -4.12 -13.35 16 20 C 0.02 0.23 5.18 86.30 0.45 0.68 16 21 C 0.41 6.84 2.84 71.98 0.20 7.05 16 22 F -0.19 -4.10 13.81 44.97 0.62 -3.48 16 23 F -0.19 -3.18 17.32 44.97 0.78 -2.40 16 24 F -0.18 -3.50 12.11 44.97 0.54 -2.95 16 25 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.07 0.91 5.12 -2.39 -0.01 0.90 16 28 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.08 1.96 8.07 -2.39 -0.02 1.94 16 30 H 0.03 0.93 8.12 -2.39 -0.02 0.91 16 31 H 0.07 2.41 8.03 -2.39 -0.02 2.39 16 32 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.05 2.13 6.49 -2.39 -0.02 2.12 16 34 H -0.01 -0.53 8.14 -2.38 -0.02 -0.55 16 35 H -0.01 -0.51 8.14 -2.39 -0.02 -0.53 16 36 H 0.26 15.18 8.31 -92.71 -0.77 14.41 16 37 H 0.08 2.25 6.33 -2.39 -0.02 2.23 16 38 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.06 1.48 5.23 -2.39 -0.01 1.47 16 40 H 0.11 1.69 8.05 -2.39 -0.02 1.67 16 41 H 0.14 1.06 7.98 -2.39 -0.02 1.04 16 42 H 0.15 1.09 6.78 -2.39 -0.02 1.08 16 Total: -1.00 -66.68 328.81 1.02 -65.67 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: 1.01 Total: 5.02 kcal Atomic # 6 Polarization: -21.50 SS G_CDS: 4.09 Total: -17.41 kcal Atomic # 7 Polarization: -83.33 SS G_CDS: -8.05 Total: -91.39 kcal Atomic # 9 Polarization: -10.78 SS G_CDS: 1.94 Total: -8.84 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -66.68 1.02 -65.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000128147025.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.845 kcal (2) G-P(sol) polarization free energy of solvation -66.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds