Wall clock time and date at job start Tue Mar 31 2020 07:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47044 * 2 1 4 4 C 1.50693 * 109.47244 * 119.99959 * 2 1 3 5 5 C 1.34516 * 125.79188 * 259.99881 * 4 2 1 6 6 C 1.41387 * 106.84240 * 179.97438 * 5 4 2 7 7 C 1.34515 * 106.83885 * 0.02562 * 6 5 4 8 8 O 1.34304 * 108.42342 * 359.73501 * 7 6 5 9 9 N 1.46906 * 109.46965 * 239.99978 * 2 1 3 10 10 C 1.46893 * 111.00136 * 306.04405 * 9 2 1 11 11 C 1.46901 * 110.99853 * 70.00100 * 9 2 1 12 12 C 1.53000 * 109.46769 * 170.00087 * 11 9 2 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 9 14 14 O 1.21278 * 119.99985 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00161 * 179.97438 * 13 12 11 16 16 C 1.46505 * 119.99832 * 0.02562 * 15 13 12 17 17 C 1.46496 * 120.00271 * 179.97438 * 15 13 12 18 18 C 1.50705 * 109.47066 * 90.00086 * 17 15 13 19 19 H 1.08001 * 119.99987 * 0.02562 * 18 17 15 20 20 C 1.37872 * 120.00127 * 179.97438 * 18 17 15 21 21 N 1.31512 * 120.00059 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00144 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47052 * 60.00305 * 22 20 18 24 24 H 1.48498 * 109.47378 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47029 * 300.00164 * 22 20 18 26 26 H 1.09000 * 109.47044 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46733 * 300.00046 * 1 2 3 28 28 H 1.09001 * 109.47141 * 59.99979 * 1 2 3 29 29 H 1.08001 * 126.57714 * 359.97108 * 5 4 2 30 30 H 1.08001 * 126.57868 * 180.02562 * 6 5 4 31 31 H 1.08002 * 125.78403 * 180.02562 * 7 6 5 32 32 H 1.08999 * 109.47439 * 183.95618 * 10 9 2 33 33 H 1.08997 * 109.47257 * 303.95746 * 10 9 2 34 34 H 1.09006 * 109.46808 * 63.95302 * 10 9 2 35 35 H 1.09002 * 109.47401 * 49.99794 * 11 9 2 36 36 H 1.09001 * 109.46874 * 289.99807 * 11 9 2 37 37 H 1.09001 * 109.47194 * 299.99524 * 12 11 9 38 38 H 1.08992 * 109.47399 * 59.99697 * 12 11 9 39 39 H 1.09003 * 109.46862 * 89.99771 * 16 15 13 40 40 H 1.08996 * 109.47101 * 209.99896 * 16 15 13 41 41 H 1.09003 * 109.46885 * 329.99503 * 16 15 13 42 42 H 1.08998 * 109.47205 * 209.99950 * 17 15 13 43 43 H 1.08997 * 109.47416 * 330.00811 * 17 15 13 44 44 H 0.97001 * 120.00292 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.4733 -0.1190 2.3553 6 6 2.8433 -1.1543 3.2443 7 6 2.6070 -2.3163 2.6093 8 8 2.1107 -2.0414 1.3919 9 7 2.0197 -0.6925 -1.1995 10 6 1.4344 -2.0355 -1.3078 11 6 1.7529 0.0972 -2.4091 12 6 2.4885 -0.5257 -3.5973 13 6 2.2143 0.2841 -4.8383 14 8 1.5013 1.2633 -4.7782 15 7 2.7623 -0.0792 -6.0148 16 6 3.6241 -1.2618 -6.0873 17 6 2.4954 0.7077 -7.2213 18 6 3.5374 1.7879 -7.3573 19 1 4.3204 1.8788 -6.6191 20 6 3.4918 2.6593 -8.4247 21 7 2.5386 2.5483 -9.3240 22 14 4.7838 3.9978 -8.5937 23 1 6.1291 3.3772 -8.6946 24 1 4.5139 4.7948 -9.8173 25 1 4.7359 4.8850 -7.4039 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 2.5332 0.9428 2.5433 30 1 3.2397 -1.0350 4.2418 31 1 2.7818 -3.3030 3.0121 32 1 1.8665 -2.5521 -2.1648 33 1 1.6467 -2.5987 -0.3992 34 1 0.3556 -1.9520 -1.4399 35 1 2.1025 1.1189 -2.2604 36 1 0.6814 0.1053 -2.6087 37 1 3.5600 -0.5337 -3.3977 38 1 2.1389 -1.5473 -3.7459 39 1 3.0175 -2.1405 -6.3066 40 1 4.3635 -1.1247 -6.8763 41 1 4.1324 -1.4000 -5.1330 42 1 2.5307 0.0567 -8.0949 43 1 1.5078 1.1629 -7.1471 44 1 2.5066 3.1611 -10.0752 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131333288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:27 Heat of formation + Delta-G solvation = -9.382314 kcal Electronic energy + Delta-G solvation = -23662.660495 eV Core-core repulsion = 20196.360297 eV Total energy + Delta-G solvation = -3466.300198 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.74251 -39.24049 -38.05183 -34.79373 -33.37261 -32.78624 -32.36952 -29.94620 -28.59741 -27.78872 -26.54302 -25.67108 -24.13759 -22.56266 -21.89179 -20.96248 -20.03605 -18.35848 -17.37600 -16.64141 -16.52057 -16.19517 -15.63405 -15.48217 -15.08414 -14.97456 -14.32600 -14.11195 -13.94305 -13.53372 -13.09782 -13.05584 -12.82929 -12.52657 -12.27538 -12.19222 -12.14651 -12.01194 -11.79763 -11.66293 -11.37647 -11.26598 -11.08393 -10.90511 -10.69671 -10.52647 -10.14012 -10.06002 -9.62336 -8.87224 -8.70327 -8.41747 -8.35746 -7.61567 -6.02586 -4.07364 1.59497 2.46637 2.82830 3.33317 3.37400 3.39323 3.48284 3.63806 4.18156 4.41018 4.47239 4.75076 4.82734 4.94228 5.02437 5.10169 5.18568 5.29594 5.34441 5.35449 5.41927 5.47646 5.59181 5.62769 5.66080 5.75275 5.76603 5.83047 5.94232 5.95328 6.09158 6.10951 6.21006 6.25912 6.33194 6.84722 6.93121 7.05419 7.08473 7.45968 7.56667 7.93860 8.25497 8.44987 8.92014 9.12342 9.57707 11.05483 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026915 B = 0.002829 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.067464 B = 9895.823101 C =10147.437715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.160 3.840 3 H 0.112 0.888 4 C 0.016 3.984 5 C -0.214 4.214 6 C -0.212 4.212 7 C -0.052 4.052 8 O -0.167 6.167 9 N -0.536 5.536 10 C 0.009 3.991 11 C 0.070 3.930 12 C -0.135 4.135 13 C 0.505 3.495 14 O -0.546 6.546 15 N -0.603 5.603 16 C 0.084 3.916 17 C 0.245 3.755 18 C -0.526 4.526 19 H 0.057 0.943 20 C 0.060 3.940 21 N -0.896 5.896 22 Si 0.898 3.102 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.276 1.276 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.072 0.928 29 H 0.146 0.854 30 H 0.145 0.855 31 H 0.199 0.801 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.031 0.969 35 H 0.084 0.916 36 H 0.047 0.953 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.031 0.969 43 H 0.043 0.957 44 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.941 -11.635 21.835 24.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.052 3.948 3 H 0.129 0.871 4 C -0.035 4.035 5 C -0.233 4.233 6 C -0.231 4.231 7 C -0.120 4.120 8 O -0.063 6.063 9 N -0.259 5.259 10 C -0.139 4.139 11 C -0.057 4.057 12 C -0.175 4.175 13 C 0.291 3.709 14 O -0.424 6.424 15 N -0.335 5.335 16 C -0.061 4.061 17 C 0.126 3.874 18 C -0.565 4.565 19 H 0.075 0.925 20 C -0.141 4.141 21 N -0.535 5.535 22 Si 0.726 3.274 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.202 1.202 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.164 0.836 30 H 0.163 0.837 31 H 0.215 0.785 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.050 0.950 35 H 0.103 0.897 36 H 0.065 0.935 37 H 0.113 0.887 38 H 0.103 0.897 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.061 0.939 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.961 -11.301 21.468 24.280 hybrid contribution 0.113 0.819 -0.024 0.827 sum -0.848 -10.482 21.444 23.884 Atomic orbital electron populations 1.22514 0.95699 1.03109 1.03313 1.20282 0.93206 0.96625 0.84715 0.87057 1.22327 1.03371 0.80498 0.97322 1.21531 1.07066 1.00591 0.94155 1.21782 1.07371 0.92300 1.01671 1.24045 1.03366 1.00314 0.84245 1.84093 1.64743 1.24698 1.32720 1.62221 1.58433 1.03285 1.01951 1.22702 0.97440 0.90444 1.03315 1.21860 0.99024 0.97347 0.87472 1.21635 1.02881 0.99948 0.93049 1.20293 0.80755 0.85336 0.84532 1.90659 1.38680 1.27642 1.85458 1.48158 1.47248 1.27877 1.10256 1.21640 0.94588 0.87593 1.02247 1.19275 0.97966 0.90150 0.80054 1.21404 1.11940 1.14422 1.08711 0.92514 1.24940 0.96027 0.97553 0.95626 1.69923 1.32519 1.38147 1.12911 0.86553 0.81594 0.81782 0.77462 1.20248 1.21191 1.20155 0.91699 0.91531 0.90903 0.83593 0.83718 0.78457 0.91033 0.90063 0.95040 0.89718 0.93451 0.88672 0.89739 0.93855 0.90842 0.92276 0.95077 0.93893 0.92679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.82 8.42 37.16 0.31 -1.51 16 2 C 0.16 1.73 2.78 -68.86 -0.19 1.54 16 3 H 0.11 1.14 7.92 -51.93 -0.41 0.73 16 4 C 0.02 0.17 6.03 -35.63 -0.21 -0.04 16 5 C -0.21 -2.17 10.80 -39.70 -0.43 -2.60 16 6 C -0.21 -1.91 10.91 -39.70 -0.43 -2.35 16 7 C -0.05 -0.45 12.09 29.42 0.36 -0.10 16 8 O -0.17 -1.81 7.80 5.69 0.04 -1.76 16 9 N -0.54 -6.45 4.70 -236.28 -1.11 -7.56 16 10 C 0.01 0.09 8.45 60.06 0.51 0.60 16 11 C 0.07 0.99 3.82 -3.82 -0.01 0.97 16 12 C -0.13 -2.00 4.18 -27.88 -0.12 -2.12 16 13 C 0.50 10.46 7.67 -10.98 -0.08 10.38 16 14 O -0.55 -13.65 15.56 5.56 0.09 -13.56 16 15 N -0.60 -12.94 2.86 -182.95 -0.52 -13.46 16 16 C 0.08 1.33 10.24 59.85 0.61 1.95 16 17 C 0.24 6.50 5.16 -5.19 -0.03 6.47 16 18 C -0.53 -15.10 9.39 -34.44 -0.32 -15.43 16 19 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 22 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 23 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 26 H 0.06 0.63 6.42 -51.93 -0.33 0.30 16 27 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.07 0.75 6.91 -51.93 -0.36 0.39 16 29 H 0.15 1.25 8.06 -52.49 -0.42 0.83 16 30 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 31 H 0.20 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.07 0.73 6.47 -51.93 -0.34 0.40 16 33 H 0.08 0.87 5.07 -51.93 -0.26 0.61 16 34 H 0.03 0.33 6.46 -51.93 -0.34 -0.01 16 35 H 0.08 1.28 7.89 -51.93 -0.41 0.87 16 36 H 0.05 0.70 7.02 -51.93 -0.36 0.33 16 37 H 0.09 1.34 7.40 -51.93 -0.38 0.95 16 38 H 0.08 1.08 6.52 -51.93 -0.34 0.74 16 39 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 40 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 41 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 42 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 43 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 355.11 15.07 5.35 5.35 Total: -1.00 -33.96 355.11 -7.33 -41.29 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -6.75 Total: -0.59 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -0.14 Total: -0.59 kcal Atomic # 7 Polarization: -46.26 SS G_CDS: -0.90 Total: -47.16 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: 0.13 Total: -15.32 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.96 -7.33 -41.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131333288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.907 kcal (2) G-P(sol) polarization free energy of solvation -33.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds