Wall clock time and date at job start Tue Mar 31 2020 07:14:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47044 * 2 1 4 4 C 1.50693 * 109.47244 * 119.99959 * 2 1 3 5 5 C 1.34516 * 125.79188 * 259.99881 * 4 2 1 6 6 C 1.41387 * 106.84240 * 179.97438 * 5 4 2 7 7 C 1.34515 * 106.83885 * 0.02562 * 6 5 4 8 8 O 1.34304 * 108.42342 * 359.73501 * 7 6 5 9 9 N 1.46906 * 109.46965 * 239.99978 * 2 1 3 10 10 C 1.46893 * 111.00136 * 306.04405 * 9 2 1 11 11 C 1.46901 * 110.99853 * 70.00100 * 9 2 1 12 12 C 1.53000 * 109.46769 * 170.00087 * 11 9 2 13 13 C 1.50703 * 109.46912 * 179.97438 * 12 11 9 14 14 O 1.21278 * 119.99985 * 0.02562 * 13 12 11 15 15 N 1.34777 * 120.00161 * 179.97438 * 13 12 11 16 16 C 1.46505 * 119.99832 * 0.02562 * 15 13 12 17 17 C 1.46496 * 120.00271 * 179.97438 * 15 13 12 18 18 C 1.50705 * 109.47066 * 90.00086 * 17 15 13 19 19 H 1.08001 * 119.99987 * 0.02562 * 18 17 15 20 20 C 1.37872 * 120.00127 * 179.97438 * 18 17 15 21 21 N 1.31512 * 120.00059 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00144 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47052 * 60.00305 * 22 20 18 24 24 H 1.48498 * 109.47378 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47029 * 300.00164 * 22 20 18 26 26 H 1.09000 * 109.47044 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.46733 * 300.00046 * 1 2 3 28 28 H 1.09001 * 109.47141 * 59.99979 * 1 2 3 29 29 H 1.08001 * 126.57714 * 359.97108 * 5 4 2 30 30 H 1.08001 * 126.57868 * 180.02562 * 6 5 4 31 31 H 1.08002 * 125.78403 * 180.02562 * 7 6 5 32 32 H 1.08999 * 109.47439 * 183.95618 * 10 9 2 33 33 H 1.08997 * 109.47257 * 303.95746 * 10 9 2 34 34 H 1.09006 * 109.46808 * 63.95302 * 10 9 2 35 35 H 1.09002 * 109.47401 * 49.99794 * 11 9 2 36 36 H 1.09001 * 109.46874 * 289.99807 * 11 9 2 37 37 H 1.09001 * 109.47194 * 299.99524 * 12 11 9 38 38 H 1.08992 * 109.47399 * 59.99697 * 12 11 9 39 39 H 1.09003 * 109.46862 * 89.99771 * 16 15 13 40 40 H 1.08996 * 109.47101 * 209.99896 * 16 15 13 41 41 H 1.09003 * 109.46885 * 329.99503 * 16 15 13 42 42 H 1.08998 * 109.47205 * 209.99950 * 17 15 13 43 43 H 1.08997 * 109.47416 * 330.00811 * 17 15 13 44 44 H 0.97001 * 120.00292 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 6 2.4733 -0.1190 2.3553 6 6 2.8433 -1.1543 3.2443 7 6 2.6070 -2.3163 2.6093 8 8 2.1107 -2.0414 1.3919 9 7 2.0197 -0.6925 -1.1995 10 6 1.4344 -2.0355 -1.3078 11 6 1.7529 0.0972 -2.4091 12 6 2.4885 -0.5257 -3.5973 13 6 2.2143 0.2841 -4.8383 14 8 1.5013 1.2633 -4.7782 15 7 2.7623 -0.0792 -6.0148 16 6 3.6241 -1.2618 -6.0873 17 6 2.4954 0.7077 -7.2213 18 6 3.5374 1.7879 -7.3573 19 1 4.3204 1.8788 -6.6191 20 6 3.4918 2.6593 -8.4247 21 7 2.5386 2.5483 -9.3240 22 14 4.7838 3.9978 -8.5937 23 1 6.1291 3.3772 -8.6946 24 1 4.5139 4.7948 -9.8173 25 1 4.7359 4.8850 -7.4039 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 2.5332 0.9428 2.5433 30 1 3.2397 -1.0350 4.2418 31 1 2.7818 -3.3030 3.0121 32 1 1.8665 -2.5521 -2.1648 33 1 1.6467 -2.5987 -0.3992 34 1 0.3556 -1.9520 -1.4399 35 1 2.1025 1.1189 -2.2604 36 1 0.6814 0.1053 -2.6087 37 1 3.5600 -0.5337 -3.3977 38 1 2.1389 -1.5473 -3.7459 39 1 3.0175 -2.1405 -6.3066 40 1 4.3635 -1.1247 -6.8763 41 1 4.1324 -1.4000 -5.1330 42 1 2.5307 0.0567 -8.0949 43 1 1.5078 1.1629 -7.1471 44 1 2.5066 3.1611 -10.0752 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131333288.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:27 Heat of formation + Delta-G solvation = -32.164077 kcal Electronic energy + Delta-G solvation = -23663.648386 eV Core-core repulsion = 20196.360297 eV Total energy + Delta-G solvation = -3467.288089 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.45895 -40.76317 -39.13675 -36.58418 -34.77120 -34.15180 -33.50788 -31.11186 -29.57620 -29.33504 -27.60506 -27.15775 -25.52722 -24.09974 -22.60483 -22.01235 -20.84591 -19.91787 -18.69641 -18.14873 -17.96630 -17.15085 -17.00297 -16.75878 -16.48759 -16.08568 -15.81844 -15.53814 -14.83751 -14.56784 -14.40211 -13.95024 -13.87714 -13.81899 -13.53981 -13.47123 -13.43503 -13.25558 -13.03492 -12.93424 -12.83909 -12.69219 -12.47186 -12.27501 -12.18432 -12.07351 -11.81589 -11.70206 -10.77151 -10.64232 -10.59313 -9.51826 -9.40677 -9.20022 -8.22257 -6.37402 0.87512 1.36839 1.41161 1.48525 1.76803 1.85347 2.13984 2.29028 2.42528 2.95120 3.07121 3.65578 3.81605 3.93390 4.05778 4.13930 4.18509 4.25449 4.35816 4.40812 4.43476 4.58101 4.60912 4.69890 4.73316 4.81464 4.91039 4.92859 4.97016 4.98407 5.06380 5.07005 5.09362 5.16255 5.23218 5.40418 5.56455 5.66801 5.84694 5.93455 5.99396 6.06422 6.31844 6.69741 6.80343 7.28381 7.49425 8.84619 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.026915 B = 0.002829 C = 0.002759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.067464 B = 9895.823101 C =10147.437715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.159 3.841 3 H 0.110 0.890 4 C -0.005 4.005 5 C -0.222 4.222 6 C -0.226 4.226 7 C -0.050 4.050 8 O -0.180 6.180 9 N -0.536 5.536 10 C 0.008 3.992 11 C 0.079 3.921 12 C -0.116 4.116 13 C 0.495 3.505 14 O -0.600 6.600 15 N -0.612 5.612 16 C 0.078 3.922 17 C 0.258 3.742 18 C -0.544 4.544 19 H 0.053 0.947 20 C 0.006 3.994 21 N -0.929 5.929 22 Si 0.968 3.032 23 H -0.260 1.260 24 H -0.278 1.278 25 H -0.277 1.277 26 H 0.064 0.936 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.155 0.845 30 H 0.165 0.835 31 H 0.233 0.767 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.032 0.968 35 H 0.067 0.933 36 H 0.035 0.965 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.023 0.977 43 H -0.003 1.003 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.717 -13.014 23.542 26.910 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.050 3.950 3 H 0.128 0.872 4 C -0.055 4.055 5 C -0.242 4.242 6 C -0.245 4.245 7 C -0.116 4.116 8 O -0.076 6.076 9 N -0.259 5.259 10 C -0.139 4.139 11 C -0.049 4.049 12 C -0.156 4.156 13 C 0.284 3.716 14 O -0.482 6.482 15 N -0.343 5.343 16 C -0.064 4.064 17 C 0.137 3.863 18 C -0.582 4.582 19 H 0.071 0.929 20 C -0.192 4.192 21 N -0.569 5.569 22 Si 0.792 3.208 23 H -0.184 1.184 24 H -0.203 1.203 25 H -0.203 1.203 26 H 0.083 0.917 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.172 0.828 30 H 0.182 0.818 31 H 0.249 0.751 32 H 0.099 0.901 33 H 0.103 0.897 34 H 0.050 0.950 35 H 0.086 0.914 36 H 0.054 0.946 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.041 0.959 43 H 0.015 0.985 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.722 -12.731 23.194 26.468 hybrid contribution -0.433 1.188 -0.488 1.355 sum 0.289 -11.543 22.706 25.473 Atomic orbital electron populations 1.22441 0.95154 1.03086 1.03276 1.20290 0.93676 0.96612 0.84375 0.87182 1.22281 1.04815 0.80856 0.97544 1.21831 1.06549 1.01498 0.94296 1.22109 1.07724 0.92106 1.02569 1.24790 1.01755 1.01816 0.83280 1.84066 1.65175 1.24541 1.33821 1.62209 1.58791 1.03610 1.01323 1.22749 0.97552 0.89690 1.03930 1.21659 0.98100 0.96877 0.88262 1.21548 1.04068 1.00078 0.89865 1.21336 0.79430 0.85080 0.85731 1.90629 1.40956 1.30240 1.86345 1.48202 1.48180 1.28920 1.08997 1.21938 0.94273 0.86112 1.04051 1.18748 0.95242 0.90218 0.82137 1.21686 1.12278 1.15434 1.08822 0.92857 1.25879 0.98238 0.99939 0.95186 1.70045 1.34210 1.39195 1.13460 0.85460 0.79333 0.78551 0.77434 1.18436 1.20308 1.20264 0.91658 0.90518 0.91941 0.82754 0.81775 0.75076 0.90132 0.89666 0.94955 0.91405 0.94644 0.86860 0.86753 0.91082 0.91685 0.88729 0.95904 0.98475 0.92380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.44 8.42 71.98 0.61 -2.84 16 2 C 0.16 3.31 2.78 44.17 0.12 3.44 16 3 H 0.11 2.26 7.92 -2.39 -0.02 2.24 16 4 C 0.00 -0.09 6.03 24.83 0.15 0.06 16 5 C -0.22 -4.20 10.80 22.19 0.24 -3.96 16 6 C -0.23 -3.59 10.91 22.19 0.24 -3.34 16 7 C -0.05 -0.73 12.09 66.97 0.81 0.08 16 8 O -0.18 -3.55 7.80 -2.56 -0.02 -3.57 16 9 N -0.54 -12.20 4.70 -901.46 -4.24 -16.44 16 10 C 0.01 0.16 8.45 127.69 1.08 1.24 16 11 C 0.08 2.18 3.82 86.30 0.33 2.51 16 12 C -0.12 -3.23 4.18 29.85 0.12 -3.10 16 13 C 0.50 20.62 7.67 87.66 0.67 21.29 16 14 O -0.60 -31.19 15.56 -3.02 -0.05 -31.23 16 15 N -0.61 -26.25 2.86 -851.13 -2.43 -28.68 16 16 C 0.08 2.34 10.24 127.77 1.31 3.64 16 17 C 0.26 14.19 5.16 85.64 0.44 14.63 16 18 C -0.54 -31.84 9.39 25.60 0.24 -31.60 16 19 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 20 C 0.01 0.38 5.46 84.65 0.46 0.84 16 21 N -0.93 -56.93 13.29 21.44 0.28 -56.65 16 22 Si 0.97 45.35 29.54 68.60 2.03 47.38 16 23 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 24 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 25 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 26 H 0.06 1.22 6.42 -2.39 -0.02 1.21 16 27 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 28 H 0.06 1.31 6.91 -2.39 -0.02 1.29 16 29 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 30 H 0.16 1.82 8.06 -2.91 -0.02 1.80 16 31 H 0.23 1.47 8.06 -2.91 -0.02 1.45 16 32 H 0.08 1.41 6.47 -2.39 -0.02 1.40 16 33 H 0.09 1.64 5.07 -2.39 -0.01 1.63 16 34 H 0.03 0.63 6.46 -2.38 -0.02 0.61 16 35 H 0.07 2.09 7.89 -2.39 -0.02 2.07 16 36 H 0.04 1.05 7.02 -2.39 -0.02 1.04 16 37 H 0.11 2.83 7.40 -2.39 -0.02 2.81 16 38 H 0.11 2.55 6.52 -2.39 -0.02 2.53 16 39 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.06 2.06 8.07 -2.39 -0.02 2.04 16 41 H 0.09 2.15 6.44 -2.39 -0.02 2.13 16 42 H 0.02 1.27 8.07 -2.39 -0.02 1.25 16 43 H 0.00 -0.18 7.42 -2.39 -0.02 -0.20 16 44 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -76.12 355.11 3.39 -72.74 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 0.98 Total: 13.58 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 6.83 Total: 2.87 kcal Atomic # 7 Polarization: -95.38 SS G_CDS: -6.39 Total: -101.77 kcal Atomic # 8 Polarization: -34.73 SS G_CDS: -0.07 Total: -34.80 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -76.12 3.39 -72.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131333288.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.571 kcal (2) G-P(sol) polarization free energy of solvation -76.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds