Wall clock time and date at job start Tue Mar 31 2020 07:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 C 1.34520 * 125.79085 * 99.71617 * 4 2 1 6 6 C 1.41383 * 106.84001 * 179.88833 * 5 4 2 7 7 C 1.34517 * 106.84092 * 0.37387 * 6 5 4 8 8 O 1.34298 * 108.42137 * 359.77048 * 7 6 5 9 9 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 10 10 C 1.46898 * 110.99921 * 176.04401 * 9 2 1 11 11 C 1.46893 * 111.00255 * 299.99972 * 9 2 1 12 12 C 1.52996 * 109.47377 * 170.00136 * 11 9 2 13 13 C 1.50701 * 109.47348 * 180.02562 * 12 11 9 14 14 O 1.21288 * 120.00013 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00009 * 179.97438 * 13 12 11 16 16 C 1.46496 * 120.00088 * 359.97438 * 15 13 12 17 17 C 1.46500 * 119.99890 * 179.97438 * 15 13 12 18 18 C 1.50701 * 109.47556 * 89.99661 * 17 15 13 19 19 H 1.08004 * 119.99602 * 0.02562 * 18 17 15 20 20 C 1.37873 * 120.00271 * 179.97438 * 18 17 15 21 21 N 1.31508 * 119.99922 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99726 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47390 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47142 * 120.00212 * 22 20 18 25 25 H 1.48506 * 109.46913 * 239.99958 * 22 20 18 26 26 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.07996 * 126.57372 * 0.02562 * 5 4 2 30 30 H 1.07998 * 126.57811 * 180.11562 * 6 5 4 31 31 H 1.07996 * 125.78516 * 179.75335 * 7 6 5 32 32 H 1.09001 * 109.47309 * 60.00232 * 10 9 2 33 33 H 1.08998 * 109.47470 * 180.02562 * 10 9 2 34 34 H 1.09007 * 109.47247 * 300.00280 * 10 9 2 35 35 H 1.09001 * 109.46860 * 290.00089 * 11 9 2 36 36 H 1.09006 * 109.47455 * 49.99667 * 11 9 2 37 37 H 1.09001 * 109.47087 * 299.99814 * 12 11 9 38 38 H 1.08996 * 109.47511 * 59.99843 * 12 11 9 39 39 H 1.08997 * 109.47058 * 90.00053 * 16 15 13 40 40 H 1.09005 * 109.47030 * 210.00066 * 16 15 13 41 41 H 1.08994 * 109.46925 * 330.00099 * 16 15 13 42 42 H 1.09001 * 109.47610 * 210.00046 * 17 15 13 43 43 H 1.09010 * 109.47172 * 330.00034 * 17 15 13 44 44 H 0.97003 * 119.99677 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.4682 -0.1191 -2.3574 6 6 2.8432 -1.1543 -3.2444 7 6 2.6064 -2.3164 -2.6095 8 8 2.1153 -2.0414 -1.3902 9 7 2.0197 -0.6925 1.1994 10 6 3.4851 -0.7946 1.1870 11 6 1.5488 -0.0265 2.4210 12 6 1.8628 -0.9044 3.6341 13 6 1.3791 -0.2213 4.8873 14 8 0.8370 0.8614 4.8172 15 7 1.5489 -0.8136 6.0860 16 6 2.2033 -2.1216 6.1706 17 6 1.0792 -0.1493 7.3043 18 6 -0.3431 -0.5612 7.5847 19 1 -0.8466 -1.2494 6.9218 20 6 -1.0011 -0.0604 8.6879 21 7 -0.3878 0.7771 9.4952 22 14 -2.7639 -0.5717 9.0357 23 1 -3.2219 -1.5160 7.9851 24 1 -2.8342 -1.2355 10.3621 25 1 -3.6367 0.6298 9.0366 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 2.5232 0.9426 -2.5472 30 1 3.2395 -1.0350 -4.2419 31 1 2.7812 -3.3030 -3.0123 32 1 3.9188 0.2051 1.1591 33 1 3.8210 -1.3117 2.0857 34 1 3.8030 -1.3532 0.3065 35 1 2.0520 0.9345 2.5280 36 1 0.4723 0.1324 2.3564 37 1 1.3596 -1.8653 3.5271 38 1 2.9392 -1.0632 3.6988 39 1 3.2777 -1.9832 6.2910 40 1 1.8094 -2.6702 7.0263 41 1 2.0095 -2.6845 5.2576 42 1 1.7130 -0.4377 8.1429 43 1 1.1245 0.9315 7.1695 44 1 -0.8510 1.1297 10.2712 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131333462.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:30 Heat of formation + Delta-G solvation = -10.761756 kcal Electronic energy + Delta-G solvation = -23654.909156 eV Core-core repulsion = 20188.549141 eV Total energy + Delta-G solvation = -3466.360015 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.74422 -39.20865 -37.89669 -34.79020 -33.34721 -32.76104 -32.40162 -30.32864 -28.97279 -27.73564 -26.01931 -25.42278 -24.08697 -22.63489 -21.93895 -21.00415 -19.99864 -18.38605 -17.44727 -16.66546 -16.53816 -16.11547 -15.81986 -15.47517 -15.00017 -14.85045 -14.50361 -14.06961 -13.73482 -13.63508 -13.09373 -12.97367 -12.78515 -12.48424 -12.38598 -12.17748 -12.06691 -11.92872 -11.82513 -11.67846 -11.48199 -11.30446 -11.12883 -10.84987 -10.61553 -10.55072 -10.14243 -10.08359 -9.58982 -8.87659 -8.63861 -8.47451 -8.42669 -7.61521 -6.03092 -4.07620 1.57387 2.42046 2.84514 3.30767 3.37779 3.41119 3.48221 3.57919 4.15102 4.40888 4.46823 4.80848 4.87430 4.92879 4.97951 5.06536 5.22230 5.29296 5.35726 5.37998 5.46206 5.53581 5.57656 5.63399 5.68145 5.71857 5.74990 5.88570 5.92640 5.96027 6.05826 6.12623 6.17623 6.25850 6.29411 6.80693 6.93132 7.07158 7.10447 7.45956 7.56750 7.93684 8.25261 8.44849 8.92252 9.12300 9.57579 11.05054 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029018 B = 0.002841 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.680165 B = 9852.634832 C =10181.924342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.161 3.839 3 H 0.071 0.929 4 C 0.011 3.989 5 C -0.218 4.218 6 C -0.215 4.215 7 C -0.048 4.048 8 O -0.157 6.157 9 N -0.537 5.537 10 C 0.021 3.979 11 C 0.067 3.933 12 C -0.134 4.134 13 C 0.505 3.495 14 O -0.546 6.546 15 N -0.603 5.603 16 C 0.084 3.916 17 C 0.244 3.756 18 C -0.524 4.524 19 H 0.058 0.942 20 C 0.060 3.940 21 N -0.896 5.896 22 Si 0.898 3.102 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.283 1.283 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.145 0.855 30 H 0.145 0.855 31 H 0.200 0.800 32 H 0.026 0.974 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.044 0.956 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.084 0.916 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.059 0.941 42 H 0.031 0.969 43 H 0.043 0.957 44 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.633 -5.892 -22.367 24.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.052 3.948 3 H 0.089 0.911 4 C -0.040 4.040 5 C -0.238 4.238 6 C -0.235 4.235 7 C -0.116 4.116 8 O -0.052 6.052 9 N -0.261 5.261 10 C -0.127 4.127 11 C -0.061 4.061 12 C -0.175 4.175 13 C 0.291 3.709 14 O -0.425 6.425 15 N -0.335 5.335 16 C -0.061 4.061 17 C 0.125 3.875 18 C -0.563 4.563 19 H 0.076 0.924 20 C -0.142 4.142 21 N -0.535 5.535 22 Si 0.726 3.274 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.088 0.912 29 H 0.163 0.837 30 H 0.163 0.837 31 H 0.217 0.783 32 H 0.045 0.955 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.109 0.891 37 H 0.114 0.886 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.092 0.908 41 H 0.077 0.923 42 H 0.049 0.951 43 H 0.061 0.939 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.042 -5.904 -21.980 24.138 hybrid contribution -0.416 0.493 0.042 0.647 sum 7.626 -5.410 -21.938 23.847 Atomic orbital electron populations 1.21971 0.92423 1.03615 1.02730 1.20170 0.96290 0.93773 0.84533 0.91099 1.22319 1.03391 0.80777 0.97504 1.21566 1.07408 1.00562 0.94244 1.21780 1.07670 0.92269 1.01739 1.24067 1.02970 1.00347 0.84186 1.84125 1.64211 1.24458 1.32424 1.62037 1.10640 1.52094 1.01369 1.22448 0.87120 1.00231 1.02878 1.21936 1.02128 0.94959 0.87030 1.21635 1.02395 1.00721 0.92731 1.20294 0.79911 0.86019 0.84686 1.90661 1.43551 1.21719 1.86527 1.48156 1.57640 1.19446 1.08286 1.21638 0.96306 0.85632 1.02494 1.19290 0.94373 0.94180 0.79683 1.21476 0.98101 1.27409 1.09298 0.92409 1.24946 0.98337 0.94956 0.95977 1.69944 1.37248 1.31345 1.14945 0.86441 0.84584 0.78438 0.77953 1.19768 1.20986 1.20882 0.90679 0.91769 0.91151 0.83721 0.83692 0.78342 0.95497 0.90717 0.91578 0.93733 0.89112 0.88623 0.89767 0.93861 0.90838 0.92265 0.95067 0.93882 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 8.97 37.16 0.33 -1.26 16 2 C 0.16 1.77 2.53 -68.86 -0.17 1.60 16 3 H 0.07 0.74 8.13 -51.93 -0.42 0.31 16 4 C 0.01 0.12 4.63 -35.62 -0.16 -0.04 16 5 C -0.22 -2.16 10.80 -39.70 -0.43 -2.58 16 6 C -0.22 -1.90 10.91 -39.70 -0.43 -2.33 16 7 C -0.05 -0.42 12.09 29.42 0.36 -0.06 16 8 O -0.16 -1.81 10.18 5.71 0.06 -1.75 16 9 N -0.54 -6.53 4.62 -236.29 -1.09 -7.62 16 10 C 0.02 0.23 9.06 60.06 0.54 0.77 16 11 C 0.07 0.94 4.06 -3.83 -0.02 0.93 16 12 C -0.13 -2.00 4.18 -27.88 -0.12 -2.11 16 13 C 0.50 10.45 7.67 -10.99 -0.08 10.36 16 14 O -0.55 -13.63 15.56 5.55 0.09 -13.54 16 15 N -0.60 -12.91 2.86 -182.95 -0.52 -13.44 16 16 C 0.08 1.33 10.24 59.84 0.61 1.94 16 17 C 0.24 6.46 5.16 -5.19 -0.03 6.44 16 18 C -0.52 -15.02 9.39 -34.44 -0.32 -15.34 16 19 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 22 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 26 H 0.07 0.84 6.20 -51.93 -0.32 0.51 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 31 H 0.20 1.01 8.06 -52.49 -0.42 0.59 16 32 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.76 6.30 -51.93 -0.33 0.44 16 34 H 0.07 0.72 6.62 -51.92 -0.34 0.37 16 35 H 0.04 0.66 8.08 -51.93 -0.42 0.24 16 36 H 0.09 1.37 5.79 -51.93 -0.30 1.07 16 37 H 0.10 1.34 7.40 -51.93 -0.38 0.96 16 38 H 0.08 1.07 6.44 -51.93 -0.33 0.74 16 39 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 41 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 42 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 43 H 0.04 1.28 7.42 -51.92 -0.39 0.90 16 44 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 360.33 15.07 5.43 5.43 Total: -1.00 -33.95 360.33 -7.26 -41.21 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -6.92 Total: -1.14 kcal Atomic # 6 Polarization: -0.04 SS G_CDS: -0.02 Total: -0.06 kcal Atomic # 7 Polarization: -46.28 SS G_CDS: -0.88 Total: -47.16 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: 0.14 Total: -15.29 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.95 -7.26 -41.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131333462.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.448 kcal (2) G-P(sol) polarization free energy of solvation -33.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds