Wall clock time and date at job start Tue Mar 31 2020 07:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 C 1.34520 * 125.79085 * 99.71617 * 4 2 1 6 6 C 1.41383 * 106.84001 * 179.88833 * 5 4 2 7 7 C 1.34517 * 106.84092 * 0.37387 * 6 5 4 8 8 O 1.34298 * 108.42137 * 359.77048 * 7 6 5 9 9 N 1.46899 * 109.47163 * 120.00030 * 2 1 3 10 10 C 1.46898 * 110.99921 * 176.04401 * 9 2 1 11 11 C 1.46893 * 111.00255 * 299.99972 * 9 2 1 12 12 C 1.52996 * 109.47377 * 170.00136 * 11 9 2 13 13 C 1.50701 * 109.47348 * 180.02562 * 12 11 9 14 14 O 1.21288 * 120.00013 * 359.97438 * 13 12 11 15 15 N 1.34776 * 120.00009 * 179.97438 * 13 12 11 16 16 C 1.46496 * 120.00088 * 359.97438 * 15 13 12 17 17 C 1.46500 * 119.99890 * 179.97438 * 15 13 12 18 18 C 1.50701 * 109.47556 * 89.99661 * 17 15 13 19 19 H 1.08004 * 119.99602 * 0.02562 * 18 17 15 20 20 C 1.37873 * 120.00271 * 179.97438 * 18 17 15 21 21 N 1.31508 * 119.99922 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 119.99726 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47390 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47142 * 120.00212 * 22 20 18 25 25 H 1.48506 * 109.46913 * 239.99958 * 22 20 18 26 26 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.07996 * 126.57372 * 0.02562 * 5 4 2 30 30 H 1.07998 * 126.57811 * 180.11562 * 6 5 4 31 31 H 1.07996 * 125.78516 * 179.75335 * 7 6 5 32 32 H 1.09001 * 109.47309 * 60.00232 * 10 9 2 33 33 H 1.08998 * 109.47470 * 180.02562 * 10 9 2 34 34 H 1.09007 * 109.47247 * 300.00280 * 10 9 2 35 35 H 1.09001 * 109.46860 * 290.00089 * 11 9 2 36 36 H 1.09006 * 109.47455 * 49.99667 * 11 9 2 37 37 H 1.09001 * 109.47087 * 299.99814 * 12 11 9 38 38 H 1.08996 * 109.47511 * 59.99843 * 12 11 9 39 39 H 1.08997 * 109.47058 * 90.00053 * 16 15 13 40 40 H 1.09005 * 109.47030 * 210.00066 * 16 15 13 41 41 H 1.08994 * 109.46925 * 330.00099 * 16 15 13 42 42 H 1.09001 * 109.47610 * 210.00046 * 17 15 13 43 43 H 1.09010 * 109.47172 * 330.00034 * 17 15 13 44 44 H 0.97003 * 119.99677 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 2.4682 -0.1191 -2.3574 6 6 2.8432 -1.1543 -3.2444 7 6 2.6064 -2.3164 -2.6095 8 8 2.1153 -2.0414 -1.3902 9 7 2.0197 -0.6925 1.1994 10 6 3.4851 -0.7946 1.1870 11 6 1.5488 -0.0265 2.4210 12 6 1.8628 -0.9044 3.6341 13 6 1.3791 -0.2213 4.8873 14 8 0.8370 0.8614 4.8172 15 7 1.5489 -0.8136 6.0860 16 6 2.2033 -2.1216 6.1706 17 6 1.0792 -0.1493 7.3043 18 6 -0.3431 -0.5612 7.5847 19 1 -0.8466 -1.2494 6.9218 20 6 -1.0011 -0.0604 8.6879 21 7 -0.3878 0.7771 9.4952 22 14 -2.7639 -0.5717 9.0357 23 1 -3.2219 -1.5160 7.9851 24 1 -2.8342 -1.2355 10.3621 25 1 -3.6367 0.6298 9.0366 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 2.5232 0.9426 -2.5472 30 1 3.2395 -1.0350 -4.2419 31 1 2.7812 -3.3030 -3.0123 32 1 3.9188 0.2051 1.1591 33 1 3.8210 -1.3117 2.0857 34 1 3.8030 -1.3532 0.3065 35 1 2.0520 0.9345 2.5280 36 1 0.4723 0.1324 2.3564 37 1 1.3596 -1.8653 3.5271 38 1 2.9392 -1.0632 3.6988 39 1 3.2777 -1.9832 6.2910 40 1 1.8094 -2.6702 7.0263 41 1 2.0095 -2.6845 5.2576 42 1 1.7130 -0.4377 8.1429 43 1 1.1245 0.9315 7.1695 44 1 -0.8510 1.1297 10.2712 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131333462.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:14:29 Heat of formation + Delta-G solvation = -33.468584 kcal Electronic energy + Delta-G solvation = -23655.893797 eV Core-core repulsion = 20188.549141 eV Total energy + Delta-G solvation = -3467.344657 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.46723 -40.75402 -38.98075 -36.57837 -34.77013 -34.14760 -33.45574 -31.50127 -29.92509 -29.40964 -27.36612 -26.69734 -25.36659 -24.15965 -22.69594 -22.06215 -20.80879 -19.93373 -18.69865 -18.25782 -17.92675 -17.22470 -17.05354 -16.82601 -16.39598 -16.03603 -15.86801 -15.49031 -14.93808 -14.48503 -14.29031 -14.14074 -13.84231 -13.65782 -13.58593 -13.44734 -13.42554 -13.21269 -13.10352 -12.86163 -12.79154 -12.64215 -12.57820 -12.40915 -12.21750 -12.13555 -11.73164 -11.65664 -10.78934 -10.65136 -10.59255 -9.43821 -9.40133 -9.34903 -8.22546 -6.37376 0.85207 1.36569 1.38764 1.50932 1.73885 1.85321 2.15883 2.27989 2.41559 2.88001 3.06950 3.65831 3.81363 3.94120 4.07099 4.12158 4.19336 4.24002 4.33380 4.38872 4.46526 4.57978 4.60251 4.72952 4.74413 4.76112 4.90898 4.94225 4.97974 5.01548 5.02640 5.05736 5.09549 5.21077 5.23534 5.27858 5.56898 5.62267 5.84795 5.91653 5.96713 6.06422 6.34820 6.70171 6.80481 7.28477 7.49466 8.84715 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.029018 B = 0.002841 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.680165 B = 9852.634832 C =10181.924342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.159 3.841 3 H 0.075 0.925 4 C -0.009 4.009 5 C -0.221 4.221 6 C -0.225 4.225 7 C -0.047 4.047 8 O -0.178 6.178 9 N -0.537 5.537 10 C 0.022 3.978 11 C 0.075 3.925 12 C -0.115 4.115 13 C 0.495 3.505 14 O -0.600 6.600 15 N -0.612 5.612 16 C 0.078 3.922 17 C 0.257 3.743 18 C -0.541 4.541 19 H 0.053 0.947 20 C 0.006 3.994 21 N -0.929 5.929 22 Si 0.969 3.031 23 H -0.267 1.267 24 H -0.269 1.269 25 H -0.281 1.281 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.156 0.844 30 H 0.167 0.833 31 H 0.232 0.768 32 H 0.028 0.972 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.031 0.969 36 H 0.075 0.925 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.094 0.906 42 H 0.023 0.977 43 H -0.003 1.003 44 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.019 -7.900 -24.063 26.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.051 3.949 3 H 0.093 0.907 4 C -0.059 4.059 5 C -0.241 4.241 6 C -0.244 4.244 7 C -0.114 4.114 8 O -0.074 6.074 9 N -0.262 5.262 10 C -0.126 4.126 11 C -0.053 4.053 12 C -0.155 4.155 13 C 0.284 3.716 14 O -0.482 6.482 15 N -0.343 5.343 16 C -0.064 4.064 17 C 0.136 3.864 18 C -0.579 4.579 19 H 0.071 0.929 20 C -0.193 4.193 21 N -0.569 5.569 22 Si 0.793 3.207 23 H -0.191 1.191 24 H -0.194 1.194 25 H -0.207 1.207 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.080 0.920 29 H 0.173 0.827 30 H 0.184 0.816 31 H 0.249 0.751 32 H 0.046 0.954 33 H 0.103 0.897 34 H 0.086 0.914 35 H 0.050 0.950 36 H 0.094 0.906 37 H 0.132 0.868 38 H 0.133 0.867 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.041 0.959 43 H 0.016 0.984 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 8.462 -7.954 -23.695 26.388 hybrid contribution -0.467 1.121 0.499 1.313 sum 7.996 -6.833 -23.196 25.469 Atomic orbital electron populations 1.21927 0.92506 1.03030 1.02852 1.20184 0.96296 0.94041 0.84359 0.90737 1.22239 1.04991 0.80958 0.97752 1.21855 1.06582 1.01498 0.94140 1.22107 1.07762 0.91937 1.02622 1.24793 1.01536 1.01900 0.83158 1.84101 1.64861 1.24626 1.33785 1.62024 1.11560 1.51781 1.00811 1.22479 0.86147 1.00487 1.03443 1.21744 1.01207 0.94477 0.87878 1.21547 1.04074 1.00474 0.89432 1.21329 0.78791 0.85496 0.85944 1.90630 1.45892 1.24264 1.87369 1.48200 1.57842 1.21237 1.07016 1.21937 0.97359 0.83069 1.04020 1.18763 0.93876 0.92027 0.81746 1.21730 0.99205 1.27512 1.09470 0.92891 1.25880 1.02928 0.94790 0.95710 1.70059 1.39177 1.32235 1.15464 0.85351 0.78806 0.78137 0.78412 1.19075 1.19391 1.20733 0.91755 0.90430 0.92001 0.82671 0.81588 0.75144 0.95360 0.89735 0.91369 0.95040 0.90635 0.86846 0.86739 0.91076 0.91667 0.88739 0.95889 0.98445 0.92403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 8.97 71.98 0.65 -2.42 16 2 C 0.16 3.40 2.53 44.17 0.11 3.51 16 3 H 0.07 1.51 8.13 -2.39 -0.02 1.50 16 4 C -0.01 -0.18 4.63 24.83 0.11 -0.07 16 5 C -0.22 -4.00 10.80 22.19 0.24 -3.76 16 6 C -0.23 -3.43 10.91 22.19 0.24 -3.19 16 7 C -0.05 -0.70 12.09 66.97 0.81 0.11 16 8 O -0.18 -3.79 10.18 -2.49 -0.03 -3.81 16 9 N -0.54 -12.38 4.62 -901.47 -4.16 -16.54 16 10 C 0.02 0.44 9.06 127.69 1.16 1.59 16 11 C 0.07 2.08 4.06 86.30 0.35 2.43 16 12 C -0.12 -3.22 4.18 29.85 0.12 -3.10 16 13 C 0.50 20.61 7.67 87.66 0.67 21.28 16 14 O -0.60 -31.12 15.56 -3.05 -0.05 -31.17 16 15 N -0.61 -26.22 2.86 -851.12 -2.43 -28.65 16 16 C 0.08 2.33 10.24 127.77 1.31 3.64 16 17 C 0.26 14.13 5.16 85.63 0.44 14.57 16 18 C -0.54 -31.62 9.39 25.60 0.24 -31.38 16 19 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 20 C 0.01 0.33 5.46 84.65 0.46 0.79 16 21 N -0.93 -56.86 13.29 21.44 0.28 -56.57 16 22 Si 0.97 45.39 29.54 68.60 2.03 47.42 16 23 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 24 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 25 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 26 H 0.06 1.47 6.20 -2.39 -0.01 1.46 16 27 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.16 2.34 8.06 -2.91 -0.02 2.31 16 30 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 31 H 0.23 1.59 8.06 -2.91 -0.02 1.57 16 32 H 0.03 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.08 1.47 6.30 -2.39 -0.02 1.46 16 34 H 0.07 1.34 6.62 -2.38 -0.02 1.33 16 35 H 0.03 0.95 8.08 -2.39 -0.02 0.93 16 36 H 0.08 2.33 5.79 -2.38 -0.01 2.32 16 37 H 0.11 2.84 7.40 -2.39 -0.02 2.82 16 38 H 0.11 2.54 6.44 -2.39 -0.02 2.53 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.06 2.06 8.07 -2.38 -0.02 2.04 16 41 H 0.09 2.15 6.44 -2.39 -0.02 2.13 16 42 H 0.02 1.28 8.07 -2.39 -0.02 1.26 16 43 H 0.00 -0.16 7.42 -2.38 -0.02 -0.18 16 44 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -76.17 360.33 3.54 -72.62 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.98 Total: 12.70 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 6.92 Total: 4.01 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -6.31 Total: -101.77 kcal Atomic # 8 Polarization: -34.91 SS G_CDS: -0.07 Total: -34.98 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -76.17 3.54 -72.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131333462.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.156 kcal (2) G-P(sol) polarization free energy of solvation -76.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.625 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds