Wall clock time and date at job start Tue Mar 31 2020 07:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46919 * 2 1 4 4 N 1.46898 * 109.47125 * 240.00041 * 2 1 3 5 5 C 1.46961 * 110.99943 * 76.10073 * 4 2 1 6 6 C 1.53046 * 109.36470 * 176.80945 * 5 4 2 7 7 N 1.46956 * 109.36466 * 58.40044 * 6 5 4 8 8 C 1.46906 * 111.00332 * 176.80948 * 7 6 5 9 9 C 1.53004 * 109.46989 * 293.80368 * 8 7 6 10 10 C 1.53000 * 109.46970 * 179.97438 * 9 8 7 11 11 C 1.50692 * 109.46939 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00394 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00382 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99383 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00386 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47123 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46733 * 120.00157 * 15 13 11 18 18 H 1.48496 * 109.46661 * 239.99647 * 15 13 11 19 19 C 1.46956 * 110.88391 * 300.67849 * 7 6 5 20 20 C 1.46956 * 111.00226 * 312.29942 * 4 2 1 21 21 C 1.53006 * 109.47248 * 120.00195 * 2 1 3 22 22 F 1.39900 * 109.47206 * 174.25668 * 21 2 1 23 23 F 1.39896 * 109.46893 * 294.26010 * 21 2 1 24 24 F 1.39901 * 109.46990 * 54.25379 * 21 2 1 25 25 H 1.08997 * 109.47548 * 299.99551 * 1 2 3 26 26 H 1.09001 * 109.47201 * 60.00112 * 1 2 3 27 27 H 1.09004 * 109.46915 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.48514 * 296.77973 * 5 4 2 29 29 H 1.08997 * 109.49238 * 56.83947 * 5 4 2 30 30 H 1.09001 * 109.49131 * 298.43268 * 6 5 4 31 31 H 1.09002 * 109.50741 * 178.37758 * 6 5 4 32 32 H 1.08999 * 109.46525 * 53.79721 * 8 7 6 33 33 H 1.08993 * 109.47364 * 173.80006 * 8 7 6 34 34 H 1.09007 * 109.46782 * 299.99711 * 9 8 7 35 35 H 1.08992 * 109.47631 * 59.99157 * 9 8 7 36 36 H 1.08999 * 109.46595 * 299.99384 * 10 9 8 37 37 H 1.09001 * 109.47085 * 59.99533 * 10 9 8 38 38 H 0.96999 * 120.00360 * 180.02562 * 14 13 11 39 39 H 1.09005 * 109.48721 * 299.35633 * 19 7 6 40 40 H 1.08998 * 109.49327 * 179.28489 * 19 7 6 41 41 H 1.08999 * 109.48803 * 303.15262 * 20 4 2 42 42 H 1.08998 * 109.48828 * 63.19916 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 1.8844 0.1577 -2.3905 6 6 2.4769 -0.5670 -3.6012 7 7 1.7820 -1.8480 -3.7905 8 6 2.2716 -2.5405 -4.9900 9 6 1.8907 -1.7361 -6.2345 10 6 2.4012 -2.4570 -7.4837 11 6 2.0254 -1.6651 -8.7094 12 1 1.4769 -0.7403 -8.6078 13 6 2.3818 -2.1211 -9.9610 14 7 3.0501 -3.2469 -10.0848 15 14 1.9153 -1.1398 -11.4805 16 1 1.1715 0.0793 -11.0733 17 1 3.1459 -0.7478 -12.2135 18 1 1.0574 -1.9712 -12.3624 19 6 1.9172 -2.6982 -2.5995 20 6 1.3247 -1.9734 -1.3886 21 6 2.0400 -0.7213 1.2493 22 9 3.4328 -0.8367 1.1852 23 9 1.6845 0.0099 2.3877 24 9 1.4690 -1.9967 1.3171 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.8297 0.3654 -2.5711 29 1 2.4177 1.0949 -2.2308 30 1 3.5380 -0.7505 -3.4319 31 1 2.3520 0.0494 -4.4915 32 1 3.3562 -2.6359 -4.9370 33 1 1.8219 -3.5317 -5.0463 34 1 0.8061 -1.6406 -6.2874 35 1 2.3403 -0.7448 -6.1782 36 1 3.4857 -2.5521 -7.4305 37 1 1.9518 -3.4485 -7.5402 38 1 3.3012 -3.5676 -10.9651 39 1 2.9719 -2.9059 -2.4187 40 1 1.3838 -3.6353 -2.7592 41 1 1.4500 -2.5900 -0.4986 42 1 0.2636 -1.7900 -1.5576 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000178265291.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:37 Heat of formation + Delta-G solvation = -151.722031 kcal Electronic energy + Delta-G solvation = -24608.955298 eV Core-core repulsion = 20594.626046 eV Total energy + Delta-G solvation = -4014.329251 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -50.34526 -47.90580 -47.72841 -39.72456 -36.73910 -33.82709 -32.14740 -31.17643 -30.42347 -27.39858 -26.66520 -25.02312 -23.76240 -22.53883 -21.74034 -19.95060 -19.60430 -18.74638 -18.65198 -17.60588 -16.49842 -16.05910 -15.41084 -15.08711 -14.89659 -14.84976 -14.59267 -14.50599 -14.27699 -14.19692 -13.99501 -13.96161 -13.82531 -13.53973 -13.49134 -12.57619 -12.39055 -12.23739 -12.14713 -11.84371 -11.62325 -11.35094 -11.13177 -11.05285 -10.82263 -10.81550 -10.49640 -10.39030 -9.60741 -9.32614 -9.03872 -8.77716 -8.33982 -8.09796 -5.99026 -4.01022 2.43177 3.21596 3.31441 3.38865 3.43058 3.50805 3.76019 4.07849 4.16383 4.47465 4.48928 4.57939 4.75914 4.97990 5.03633 5.09505 5.23769 5.27487 5.35126 5.36926 5.45685 5.61664 5.67599 5.74958 5.86146 5.91558 5.98350 6.07329 6.31488 6.46659 6.61159 6.69900 6.77271 7.11483 7.32187 7.36648 7.69620 7.84432 8.01607 8.44823 9.06501 9.62981 11.12496 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.042246 B = 0.002648 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.625446 B =10571.460112 C =10788.063260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.038 3.962 3 H 0.123 0.877 4 N -0.529 5.529 5 C 0.061 3.939 6 C 0.055 3.945 7 N -0.541 5.541 8 C 0.057 3.943 9 C -0.104 4.104 10 C 0.021 3.979 11 C -0.517 4.517 12 H 0.055 0.945 13 C 0.055 3.945 14 N -0.896 5.896 15 Si 0.891 3.109 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.057 3.943 20 C 0.034 3.966 21 C 0.460 3.540 22 F -0.172 7.172 23 F -0.185 7.185 24 F -0.181 7.181 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.051 0.949 29 H 0.081 0.919 30 H 0.041 0.959 31 H 0.091 0.909 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.054 0.946 35 H 0.046 0.954 36 H 0.013 0.987 37 H 0.015 0.985 38 H 0.259 0.741 39 H 0.040 0.960 40 H 0.080 0.920 41 H 0.092 0.908 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.751 6.197 24.343 25.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.072 4.072 3 H 0.140 0.860 4 N -0.253 5.253 5 C -0.066 4.066 6 C -0.074 4.074 7 N -0.265 5.265 8 C -0.070 4.070 9 C -0.142 4.142 10 C -0.016 4.016 11 C -0.556 4.556 12 H 0.073 0.927 13 C -0.146 4.146 14 N -0.536 5.536 15 Si 0.719 3.281 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.210 1.210 19 C -0.071 4.071 20 C -0.093 4.093 21 C 0.405 3.595 22 F -0.154 7.154 23 F -0.167 7.167 24 F -0.163 7.163 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.096 0.904 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.060 0.940 31 H 0.109 0.891 32 H 0.048 0.952 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.032 0.968 37 H 0.034 0.966 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.099 0.901 41 H 0.110 0.890 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.652 6.057 24.227 25.238 hybrid contribution -0.036 0.307 -0.683 0.749 sum -3.688 6.363 23.544 24.666 Atomic orbital electron populations 1.22481 0.93686 1.04492 1.04334 1.22792 0.96249 0.99352 0.88845 0.85956 1.62262 1.56030 1.04901 1.02109 1.22252 1.00532 0.95466 0.88379 1.22185 0.96139 0.91917 0.97124 1.62263 1.56984 1.04276 1.03026 1.22285 0.97334 0.97999 0.89400 1.21646 1.00688 0.98287 0.93552 1.19075 0.96200 0.95670 0.90682 1.21286 1.35446 1.07637 0.91218 0.92656 1.25036 0.95265 0.95100 0.99159 1.69975 1.39382 1.20881 1.23348 0.86547 0.78191 0.80193 0.83144 1.19736 1.21055 1.21035 1.22120 0.99639 0.96086 0.89295 1.22690 0.97073 0.90145 0.99409 1.20517 0.76069 0.77448 0.85450 1.93208 1.29780 1.95944 1.96443 1.93171 1.91825 1.77354 1.54318 1.93079 1.84766 1.42067 1.96350 0.90787 0.89988 0.90439 0.93103 0.90080 0.94047 0.89097 0.95168 0.91171 0.92674 0.93507 0.96815 0.96630 0.93093 0.94196 0.90122 0.88960 0.92739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.33 8.05 37.16 0.30 -1.03 16 2 C 0.04 0.31 2.42 -67.71 -0.16 0.15 16 3 H 0.12 0.81 7.91 -51.93 -0.41 0.40 16 4 N -0.53 -5.40 4.44 -226.49 -1.01 -6.41 16 5 C 0.06 0.63 5.40 -3.77 -0.02 0.61 16 6 C 0.05 0.72 5.41 -3.77 -0.02 0.70 16 7 N -0.54 -7.85 4.71 -234.46 -1.10 -8.96 16 8 C 0.06 0.98 4.96 -3.82 -0.02 0.96 16 9 C -0.10 -2.12 5.09 -26.73 -0.14 -2.26 16 10 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 11 C -0.52 -14.70 9.11 -34.44 -0.31 -15.02 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 13 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 14 N -0.90 -27.08 13.29 55.43 0.74 -26.35 16 15 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 16 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 18 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 19 C 0.06 0.72 5.61 -3.77 -0.02 0.70 16 20 C 0.03 0.36 4.46 -3.77 -0.02 0.35 16 21 C 0.46 4.33 2.78 37.16 0.10 4.44 16 22 F -0.17 -1.93 17.13 2.25 0.04 -1.89 16 23 F -0.19 -1.70 17.02 2.25 0.04 -1.67 16 24 F -0.18 -1.81 13.71 2.25 0.03 -1.78 16 25 H 0.07 0.43 7.96 -51.93 -0.41 0.02 16 26 H 0.08 0.56 7.02 -51.93 -0.36 0.19 16 27 H 0.08 0.58 5.91 -51.93 -0.31 0.28 16 28 H 0.05 0.52 7.02 -51.93 -0.36 0.15 16 29 H 0.08 0.70 8.02 -51.93 -0.42 0.28 16 30 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 1.25 6.34 -51.93 -0.33 0.92 16 32 H 0.03 0.53 8.12 -51.93 -0.42 0.11 16 33 H 0.07 1.20 8.03 -51.93 -0.42 0.79 16 34 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.05 0.93 6.49 -51.93 -0.34 0.60 16 36 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 41 H 0.09 0.95 5.36 -51.93 -0.28 0.67 16 42 H 0.05 0.57 6.41 -51.93 -0.33 0.24 16 LS Contribution 334.30 15.07 5.04 5.04 Total: -1.00 -30.27 334.30 -8.26 -38.53 By element: Atomic # 1 Polarization: 1.78 SS G_CDS: -6.47 Total: -4.69 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: -0.54 Total: -8.51 kcal Atomic # 7 Polarization: -40.34 SS G_CDS: -1.37 Total: -41.71 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 0.11 Total: -5.34 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.27 -8.26 -38.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178265291.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.195 kcal (2) G-P(sol) polarization free energy of solvation -30.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds