Wall clock time and date at job start Tue Mar 31 2020 07:25:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.46919 * 2 1 4 4 N 1.46898 * 109.47125 * 240.00041 * 2 1 3 5 5 C 1.46961 * 110.99943 * 76.10073 * 4 2 1 6 6 C 1.53046 * 109.36470 * 176.80945 * 5 4 2 7 7 N 1.46956 * 109.36466 * 58.40044 * 6 5 4 8 8 C 1.46906 * 111.00332 * 176.80948 * 7 6 5 9 9 C 1.53004 * 109.46989 * 293.80368 * 8 7 6 10 10 C 1.53000 * 109.46970 * 179.97438 * 9 8 7 11 11 C 1.50692 * 109.46939 * 179.97438 * 10 9 8 12 12 H 1.08001 * 120.00394 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00382 * 179.97438 * 11 10 9 14 14 N 1.31513 * 119.99383 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00386 * 179.97438 * 13 11 10 16 16 H 1.48496 * 109.47123 * 359.97438 * 15 13 11 17 17 H 1.48500 * 109.46733 * 120.00157 * 15 13 11 18 18 H 1.48496 * 109.46661 * 239.99647 * 15 13 11 19 19 C 1.46956 * 110.88391 * 300.67849 * 7 6 5 20 20 C 1.46956 * 111.00226 * 312.29942 * 4 2 1 21 21 C 1.53006 * 109.47248 * 120.00195 * 2 1 3 22 22 F 1.39900 * 109.47206 * 174.25668 * 21 2 1 23 23 F 1.39896 * 109.46893 * 294.26010 * 21 2 1 24 24 F 1.39901 * 109.46990 * 54.25379 * 21 2 1 25 25 H 1.08997 * 109.47548 * 299.99551 * 1 2 3 26 26 H 1.09001 * 109.47201 * 60.00112 * 1 2 3 27 27 H 1.09004 * 109.46915 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.48514 * 296.77973 * 5 4 2 29 29 H 1.08997 * 109.49238 * 56.83947 * 5 4 2 30 30 H 1.09001 * 109.49131 * 298.43268 * 6 5 4 31 31 H 1.09002 * 109.50741 * 178.37758 * 6 5 4 32 32 H 1.08999 * 109.46525 * 53.79721 * 8 7 6 33 33 H 1.08993 * 109.47364 * 173.80006 * 8 7 6 34 34 H 1.09007 * 109.46782 * 299.99711 * 9 8 7 35 35 H 1.08992 * 109.47631 * 59.99157 * 9 8 7 36 36 H 1.08999 * 109.46595 * 299.99384 * 10 9 8 37 37 H 1.09001 * 109.47085 * 59.99533 * 10 9 8 38 38 H 0.96999 * 120.00360 * 180.02562 * 14 13 11 39 39 H 1.09005 * 109.48721 * 299.35633 * 19 7 6 40 40 H 1.08998 * 109.49327 * 179.28489 * 19 7 6 41 41 H 1.08999 * 109.48803 * 303.15262 * 20 4 2 42 42 H 1.08998 * 109.48828 * 63.19916 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1994 5 6 1.8844 0.1577 -2.3905 6 6 2.4769 -0.5670 -3.6012 7 7 1.7820 -1.8480 -3.7905 8 6 2.2716 -2.5405 -4.9900 9 6 1.8907 -1.7361 -6.2345 10 6 2.4012 -2.4570 -7.4837 11 6 2.0254 -1.6651 -8.7094 12 1 1.4769 -0.7403 -8.6078 13 6 2.3818 -2.1211 -9.9610 14 7 3.0501 -3.2469 -10.0848 15 14 1.9153 -1.1398 -11.4805 16 1 1.1715 0.0793 -11.0733 17 1 3.1459 -0.7478 -12.2135 18 1 1.0574 -1.9712 -12.3624 19 6 1.9172 -2.6982 -2.5995 20 6 1.3247 -1.9734 -1.3886 21 6 2.0400 -0.7213 1.2493 22 9 3.4328 -0.8367 1.1852 23 9 1.6845 0.0099 2.3877 24 9 1.4690 -1.9967 1.3171 25 1 -0.3634 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 0.8297 0.3654 -2.5711 29 1 2.4177 1.0949 -2.2308 30 1 3.5380 -0.7505 -3.4319 31 1 2.3520 0.0494 -4.4915 32 1 3.3562 -2.6359 -4.9370 33 1 1.8219 -3.5317 -5.0463 34 1 0.8061 -1.6406 -6.2874 35 1 2.3403 -0.7448 -6.1782 36 1 3.4857 -2.5521 -7.4305 37 1 1.9518 -3.4485 -7.5402 38 1 3.3012 -3.5676 -10.9651 39 1 2.9719 -2.9059 -2.4187 40 1 1.3838 -3.6353 -2.7592 41 1 1.4500 -2.5900 -0.4986 42 1 0.2636 -1.7900 -1.5576 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178265291.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:36 Heat of formation + Delta-G solvation = -171.236577 kcal Electronic energy + Delta-G solvation = -24609.801512 eV Core-core repulsion = 20594.626046 eV Total energy + Delta-G solvation = -4015.175466 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.09270 -48.64280 -48.50996 -40.64093 -37.84650 -35.67010 -33.71487 -32.16114 -31.66199 -28.74028 -27.57290 -26.40335 -24.76251 -24.04248 -22.69513 -21.61299 -20.55665 -19.49376 -19.40570 -18.50335 -18.33927 -17.11811 -16.59612 -16.37052 -16.10816 -15.83170 -15.69357 -15.45650 -15.31325 -15.09712 -14.91247 -14.83083 -14.72080 -14.64508 -14.28952 -14.16715 -13.69145 -13.39746 -13.11334 -12.94251 -12.88918 -12.69783 -12.58247 -12.48053 -12.29494 -11.96691 -11.84023 -11.76724 -11.35912 -11.32465 -11.00598 -10.54845 -9.57275 -9.27476 -8.19540 -6.30450 1.40775 1.41018 1.54597 1.72314 2.41477 2.46365 2.81396 2.93711 3.07622 3.13806 3.43872 3.76109 3.94488 3.96993 4.03080 4.16903 4.27523 4.29931 4.42439 4.49221 4.56990 4.60766 4.69824 4.72332 4.83364 4.90166 4.91814 4.96034 5.03828 5.10016 5.17142 5.27737 5.52985 5.71245 5.74939 5.78887 5.86957 6.08062 6.16907 6.28070 6.86988 7.38910 8.92706 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.042246 B = 0.002648 C = 0.002595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 662.625446 B =10571.460112 C =10788.063260 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.043 3.957 3 H 0.143 0.857 4 N -0.541 5.541 5 C 0.069 3.931 6 C 0.052 3.948 7 N -0.542 5.542 8 C 0.068 3.932 9 C -0.086 4.086 10 C 0.025 3.975 11 C -0.540 4.540 12 H 0.060 0.940 13 C -0.003 4.003 14 N -0.935 5.935 15 Si 0.966 3.034 16 H -0.261 1.261 17 H -0.278 1.278 18 H -0.278 1.278 19 C 0.056 3.944 20 C 0.042 3.958 21 C 0.458 3.542 22 F -0.185 7.185 23 F -0.183 7.183 24 F -0.186 7.186 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.070 0.930 28 H 0.057 0.943 29 H 0.103 0.897 30 H 0.031 0.969 31 H 0.083 0.917 32 H 0.021 0.979 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.052 0.948 36 H -0.012 1.012 37 H -0.009 1.009 38 H 0.263 0.737 39 H 0.030 0.970 40 H 0.085 0.915 41 H 0.097 0.903 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.820 7.934 25.056 26.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.067 4.067 3 H 0.160 0.840 4 N -0.265 5.265 5 C -0.058 4.058 6 C -0.077 4.077 7 N -0.266 5.266 8 C -0.059 4.059 9 C -0.124 4.124 10 C -0.012 4.012 11 C -0.578 4.578 12 H 0.079 0.921 13 C -0.200 4.200 14 N -0.575 5.575 15 Si 0.790 3.210 16 H -0.184 1.184 17 H -0.204 1.204 18 H -0.204 1.204 19 C -0.072 4.072 20 C -0.086 4.086 21 C 0.403 3.597 22 F -0.166 7.166 23 F -0.165 7.165 24 F -0.168 7.168 25 H 0.105 0.895 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.075 0.925 29 H 0.121 0.879 30 H 0.049 0.951 31 H 0.101 0.899 32 H 0.039 0.961 33 H 0.086 0.914 34 H 0.072 0.928 35 H 0.070 0.930 36 H 0.007 0.993 37 H 0.009 0.991 38 H 0.072 0.928 39 H 0.049 0.951 40 H 0.103 0.897 41 H 0.115 0.885 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.729 7.804 24.967 26.582 hybrid contribution 0.328 -0.268 -0.848 0.948 sum -4.401 7.536 24.119 25.649 Atomic orbital electron populations 1.22455 0.92474 1.04359 1.05235 1.22875 0.97096 0.99730 0.87038 0.83955 1.62185 1.56577 1.04951 1.02803 1.22188 1.00907 0.95659 0.87063 1.22241 0.95745 0.91275 0.98400 1.62226 1.56843 1.04871 1.02701 1.21998 0.96746 0.97583 0.89608 1.21369 1.00158 0.98241 0.92665 1.18975 0.94456 0.94899 0.92919 1.21723 1.35574 1.08086 0.92427 0.92141 1.26006 0.95023 0.96167 1.02809 1.70107 1.40424 1.22607 1.24407 0.85386 0.78103 0.78873 0.78619 1.18439 1.20398 1.20410 1.22187 0.99379 0.96409 0.89239 1.22595 0.97142 0.90465 0.98359 1.20749 0.75474 0.77386 0.86057 1.93184 1.30914 1.96015 1.96528 1.93174 1.91727 1.77227 1.54346 1.93068 1.84748 1.42555 1.96399 0.89505 0.89450 0.91095 0.92503 0.87919 0.95073 0.89912 0.96062 0.91390 0.92839 0.92980 0.99333 0.99086 0.92802 0.95150 0.89667 0.88514 0.92196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.06 8.05 71.98 0.58 -1.48 16 2 C 0.04 0.59 2.42 44.92 0.11 0.70 16 3 H 0.14 1.40 7.91 -2.39 -0.02 1.39 16 4 N -0.54 -9.91 4.44 -870.47 -3.87 -13.77 16 5 C 0.07 1.25 5.40 86.31 0.47 1.72 16 6 C 0.05 1.30 5.41 86.31 0.47 1.77 16 7 N -0.54 -15.36 4.71 -895.70 -4.22 -19.58 16 8 C 0.07 2.38 4.96 86.30 0.43 2.80 16 9 C -0.09 -3.57 5.09 30.60 0.16 -3.41 16 10 C 0.03 1.34 4.97 29.85 0.15 1.49 16 11 C -0.54 -31.00 9.11 25.60 0.23 -30.77 16 12 H 0.06 3.33 7.74 -2.91 -0.02 3.30 16 13 C 0.00 -0.15 5.46 84.66 0.46 0.31 16 14 N -0.93 -57.44 13.29 21.45 0.28 -57.16 16 15 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 16 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 17 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 19 C 0.06 1.36 5.61 86.31 0.48 1.85 16 20 C 0.04 0.82 4.46 86.31 0.38 1.21 16 21 C 0.46 7.77 2.78 71.98 0.20 7.97 16 22 F -0.19 -3.89 17.13 44.97 0.77 -3.12 16 23 F -0.18 -3.01 17.02 44.97 0.77 -2.24 16 24 F -0.19 -3.44 13.71 44.97 0.62 -2.83 16 25 H 0.09 0.76 7.96 -2.39 -0.02 0.74 16 26 H 0.09 0.91 7.02 -2.39 -0.02 0.89 16 27 H 0.07 0.90 5.91 -2.38 -0.01 0.88 16 28 H 0.06 0.99 7.02 -2.39 -0.02 0.98 16 29 H 0.10 1.45 8.02 -2.39 -0.02 1.43 16 30 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 2.21 6.34 -2.39 -0.02 2.19 16 32 H 0.02 0.77 8.12 -2.39 -0.02 0.75 16 33 H 0.07 2.37 8.03 -2.39 -0.02 2.35 16 34 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 35 H 0.05 2.08 6.49 -2.39 -0.02 2.07 16 36 H -0.01 -0.68 8.14 -2.39 -0.02 -0.69 16 37 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 38 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 39 H 0.03 0.80 8.14 -2.38 -0.02 0.78 16 40 H 0.08 1.97 8.07 -2.39 -0.02 1.95 16 41 H 0.10 1.84 5.36 -2.39 -0.01 1.83 16 42 H 0.06 1.13 6.41 -2.39 -0.02 1.11 16 Total: -1.00 -65.04 334.30 1.51 -63.54 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 1.01 Total: 4.58 kcal Atomic # 6 Polarization: -19.97 SS G_CDS: 4.12 Total: -15.85 kcal Atomic # 7 Polarization: -82.71 SS G_CDS: -7.80 Total: -90.51 kcal Atomic # 9 Polarization: -10.34 SS G_CDS: 2.15 Total: -8.19 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -65.04 1.51 -63.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178265291.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.700 kcal (2) G-P(sol) polarization free energy of solvation -65.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.537 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.237 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds