Wall clock time and date at job start Tue Mar 31 2020 07:25:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46806 * 2 1 4 4 N 1.46898 * 109.47128 * 119.99425 * 2 1 3 5 5 C 1.46959 * 110.99916 * 51.19058 * 4 2 1 6 6 C 1.53059 * 109.36388 * 176.81085 * 5 4 2 7 7 N 1.46956 * 109.36035 * 58.40382 * 6 5 4 8 8 C 1.46908 * 110.99655 * 176.81156 * 7 6 5 9 9 C 1.52999 * 109.47122 * 313.79826 * 8 7 6 10 10 C 1.52997 * 109.46908 * 179.97438 * 9 8 7 11 11 C 1.50703 * 109.46878 * 180.02562 * 10 9 8 12 12 H 1.08004 * 120.00088 * 0.02562 * 11 10 9 13 13 C 1.37882 * 120.00134 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99601 * 359.97438 * 13 11 10 15 15 Si 1.86792 * 120.00036 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47563 * 89.99597 * 15 13 11 17 17 H 1.48499 * 109.46945 * 209.99922 * 15 13 11 18 18 H 1.48502 * 109.47168 * 329.99607 * 15 13 11 19 19 C 1.46959 * 110.88069 * 300.67619 * 7 6 5 20 20 C 1.46959 * 111.00047 * 287.39362 * 4 2 1 21 21 C 1.52990 * 109.47290 * 239.99549 * 2 1 3 22 22 F 1.39901 * 109.47304 * 305.96768 * 21 2 1 23 23 F 1.39906 * 109.47146 * 65.96977 * 21 2 1 24 24 F 1.39906 * 109.47231 * 185.96631 * 21 2 1 25 25 H 1.09003 * 109.46842 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47047 * 300.00021 * 1 2 3 27 27 H 1.08994 * 109.47153 * 60.00549 * 1 2 3 28 28 H 1.08996 * 109.49374 * 296.77755 * 5 4 2 29 29 H 1.08997 * 109.48706 * 56.85059 * 5 4 2 30 30 H 1.08998 * 109.48958 * 298.43654 * 6 5 4 31 31 H 1.09001 * 109.48591 * 178.37041 * 6 5 4 32 32 H 1.09003 * 109.47091 * 73.79971 * 8 7 6 33 33 H 1.09000 * 109.46818 * 193.79525 * 8 7 6 34 34 H 1.08994 * 109.47008 * 300.00087 * 9 8 7 35 35 H 1.09004 * 109.46825 * 59.99974 * 9 8 7 36 36 H 1.08994 * 109.47486 * 299.99952 * 10 9 8 37 37 H 1.08995 * 109.47418 * 60.00484 * 10 9 8 38 38 H 0.97001 * 119.99388 * 180.02562 * 14 13 11 39 39 H 1.08999 * 109.49102 * 299.35473 * 19 7 6 40 40 H 1.09000 * 109.48431 * 179.29059 * 19 7 6 41 41 H 1.09001 * 109.48995 * 303.15237 * 20 4 2 42 42 H 1.08996 * 109.49054 * 63.19988 * 20 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 1.3845 -2.0098 1.3433 6 6 1.9782 -2.7297 2.5566 7 7 1.7670 -1.9123 3.7594 8 6 2.2567 -2.6047 4.9590 9 6 1.7714 -4.0556 4.9442 10 6 2.2819 -4.7768 6.1932 11 6 1.8044 -6.2061 6.1784 12 1 1.1978 -6.5643 5.3597 13 6 2.1419 -7.0566 7.2099 14 7 2.8809 -6.6205 8.2065 15 14 1.5505 -8.8283 7.1911 16 1 2.5509 -9.6768 6.4950 17 1 1.3796 -9.3079 8.5860 18 1 0.2509 -8.9088 6.4772 19 6 2.4022 -0.5949 3.6156 20 6 1.8086 0.1250 2.4024 21 6 2.0400 -0.7213 -1.2491 22 9 1.4652 -1.9948 -1.3197 23 9 1.6891 0.0126 -2.3874 24 9 3.4324 -0.8412 -1.1826 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 0.3114 -1.8826 1.4851 29 1 1.5656 -2.6007 0.4455 30 1 3.0466 -2.8811 2.4027 31 1 1.4881 -3.6951 2.6822 32 1 3.3466 -2.5862 4.9698 33 1 1.8761 -2.1032 5.8488 34 1 0.6817 -4.0741 4.9335 35 1 2.1521 -4.5570 4.0544 36 1 3.3717 -4.7584 6.2036 37 1 1.9016 -4.2756 7.0832 38 1 3.1187 -7.2189 8.9320 39 1 3.4754 -0.7221 3.4739 40 1 2.2212 -0.0040 4.5136 41 1 2.2987 1.0904 2.2768 42 1 0.7402 0.2767 2.5561 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000178265310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:25:39 Heat of formation + Delta-G solvation = -168.150652 kcal Electronic energy + Delta-G solvation = -24758.896592 eV Core-core repulsion = 20743.854942 eV Total energy + Delta-G solvation = -4015.041650 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.161 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.11012 -48.66534 -48.51610 -40.66579 -37.91496 -35.65566 -33.73634 -31.96871 -31.81474 -28.73996 -27.56881 -26.38756 -24.92709 -24.05042 -22.68019 -21.56709 -20.50563 -19.50575 -19.41960 -18.53223 -18.31152 -17.21021 -16.51514 -16.33764 -16.10848 -15.89587 -15.65477 -15.56762 -15.35954 -15.10261 -14.92028 -14.81165 -14.73289 -14.65883 -14.28160 -14.14754 -13.67572 -13.43473 -13.07359 -13.03454 -12.82374 -12.72919 -12.57503 -12.43899 -12.38332 -11.95536 -11.83365 -11.61058 -11.46704 -11.29079 -11.04201 -10.55352 -9.56154 -9.26658 -8.20544 -6.31544 1.39889 1.41236 1.52503 1.72446 2.40670 2.46836 2.80623 2.95063 3.07089 3.12696 3.42702 3.76541 3.94280 3.98116 4.04439 4.18523 4.24771 4.28584 4.42280 4.51295 4.52814 4.61768 4.68305 4.70402 4.84060 4.87534 4.94666 4.95391 5.03555 5.12639 5.17957 5.24653 5.50573 5.71166 5.73572 5.78728 5.84723 6.07275 6.16173 6.26957 6.85307 7.37726 8.91463 Molecular weight = 294.16amu Principal moments of inertia in cm(-1) A = 0.026936 B = 0.002978 C = 0.002817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.261749 B = 9400.447749 C = 9936.965230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.045 3.955 3 H 0.147 0.853 4 N -0.541 5.541 5 C 0.041 3.959 6 C 0.053 3.947 7 N -0.541 5.541 8 C 0.068 3.932 9 C -0.095 4.095 10 C 0.027 3.973 11 C -0.543 4.543 12 H 0.059 0.941 13 C -0.001 4.001 14 N -0.934 5.934 15 Si 0.965 3.035 16 H -0.273 1.273 17 H -0.281 1.281 18 H -0.263 1.263 19 C 0.052 3.948 20 C 0.067 3.933 21 C 0.455 3.545 22 F -0.187 7.187 23 F -0.183 7.183 24 F -0.185 7.185 25 H 0.066 0.934 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.093 0.907 30 H 0.026 0.974 31 H 0.080 0.920 32 H 0.022 0.978 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.051 0.949 36 H -0.012 1.012 37 H -0.007 1.007 38 H 0.264 0.736 39 H 0.032 0.968 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.295 18.275 -19.243 26.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.066 4.066 3 H 0.165 0.835 4 N -0.266 5.266 5 C -0.087 4.087 6 C -0.075 4.075 7 N -0.265 5.265 8 C -0.059 4.059 9 C -0.133 4.133 10 C -0.011 4.011 11 C -0.581 4.581 12 H 0.077 0.923 13 C -0.199 4.199 14 N -0.574 5.574 15 Si 0.789 3.211 16 H -0.198 1.198 17 H -0.207 1.207 18 H -0.187 1.187 19 C -0.076 4.076 20 C -0.060 4.060 21 C 0.401 3.599 22 F -0.169 7.169 23 F -0.164 7.164 24 F -0.166 7.166 25 H 0.085 0.915 26 H 0.109 0.891 27 H 0.105 0.895 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.044 0.956 31 H 0.098 0.902 32 H 0.040 0.960 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.006 0.994 37 H 0.012 0.988 38 H 0.072 0.928 39 H 0.050 0.950 40 H 0.111 0.889 41 H 0.126 0.874 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.200 18.219 -19.105 26.732 hybrid contribution 0.282 -1.333 0.236 1.383 sum -3.918 16.886 -18.869 25.623 Atomic orbital electron populations 1.22463 0.92586 1.04195 1.05390 1.22893 0.97015 0.99829 0.86825 0.83522 1.62234 1.57815 1.03816 1.02687 1.22624 0.97680 0.89970 0.98420 1.22220 0.98735 0.97200 0.89366 1.62310 1.57987 1.03890 1.02362 1.22019 0.96591 0.94469 0.92869 1.21526 1.00072 0.93541 0.98178 1.18958 0.94501 0.94417 0.93234 1.21695 1.32452 0.97186 1.06764 0.92260 1.25991 0.95220 1.03630 0.95046 1.70099 1.38630 1.37565 1.11112 0.85445 0.79087 0.79036 0.77483 1.19820 1.20657 1.18679 1.22265 0.96355 0.90065 0.98922 1.22226 1.00733 0.96242 0.86765 1.20815 0.75498 0.77375 0.86230 1.93064 1.84640 1.42839 1.96346 1.93176 1.91835 1.77036 1.54363 1.93187 1.30954 1.95986 1.96519 0.91537 0.89071 0.89477 0.92288 0.88866 0.95612 0.90183 0.96007 0.90922 0.92694 0.92988 0.99357 0.98842 0.92758 0.95008 0.88917 0.87428 0.92343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.11 8.13 71.98 0.59 -1.53 16 2 C 0.04 0.61 2.43 44.91 0.11 0.72 16 3 H 0.15 1.33 7.98 -2.38 -0.02 1.31 16 4 N -0.54 -10.06 4.46 -870.47 -3.89 -13.95 16 5 C 0.04 0.90 4.50 86.31 0.39 1.29 16 6 C 0.05 1.49 4.93 86.31 0.43 1.92 16 7 N -0.54 -15.41 4.86 -895.68 -4.35 -19.77 16 8 C 0.07 2.37 5.28 86.30 0.46 2.83 16 9 C -0.10 -4.00 4.42 30.59 0.14 -3.86 16 10 C 0.03 1.42 4.97 29.85 0.15 1.57 16 11 C -0.54 -31.45 9.11 25.60 0.23 -31.21 16 12 H 0.06 3.30 7.74 -2.91 -0.02 3.27 16 13 C 0.00 -0.07 5.46 84.66 0.46 0.39 16 14 N -0.93 -57.53 13.29 21.45 0.28 -57.25 16 15 Si 0.97 44.76 29.54 68.60 2.03 46.78 16 16 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 17 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 18 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 19 C 0.05 1.16 5.58 86.31 0.48 1.64 16 20 C 0.07 1.09 5.37 86.31 0.46 1.55 16 21 C 0.46 8.17 2.74 71.98 0.20 8.37 16 22 F -0.19 -3.84 13.55 44.97 0.61 -3.23 16 23 F -0.18 -3.11 17.03 44.97 0.77 -2.34 16 24 F -0.19 -4.07 17.13 44.97 0.77 -3.30 16 25 H 0.07 0.93 5.91 -2.39 -0.01 0.91 16 26 H 0.09 0.88 6.86 -2.39 -0.02 0.86 16 27 H 0.09 0.77 7.96 -2.39 -0.02 0.75 16 28 H 0.06 1.25 6.40 -2.39 -0.02 1.23 16 29 H 0.09 2.11 5.25 -2.39 -0.01 2.10 16 30 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 2.44 5.99 -2.39 -0.01 2.43 16 32 H 0.02 0.79 8.08 -2.39 -0.02 0.77 16 33 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 35 H 0.05 2.14 6.26 -2.38 -0.01 2.13 16 36 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 37 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 38 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.11 1.20 8.05 -2.39 -0.02 1.18 16 42 H 0.06 0.89 6.86 -2.39 -0.02 0.87 16 Total: -1.00 -65.88 332.75 1.32 -64.56 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: 1.01 Total: 4.81 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: 4.09 Total: -16.33 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -7.95 Total: -90.96 kcal Atomic # 9 Polarization: -11.02 SS G_CDS: 2.15 Total: -8.87 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.78 kcal Total: -65.88 1.32 -64.56 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000178265310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.587 kcal (2) G-P(sol) polarization free energy of solvation -65.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds