Wall clock time and date at job start Tue Mar 31 2020 07:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47104 * 2 1 4 4 C 1.50701 * 109.47500 * 119.99895 * 2 1 3 5 5 H 1.07997 * 120.00292 * 119.99643 * 4 2 1 6 6 C 1.37881 * 119.99826 * 300.00297 * 4 2 1 7 7 N 1.31507 * 119.99861 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 120.00051 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.47268 * 89.99958 * 8 6 4 10 10 H 1.48501 * 109.47437 * 210.00399 * 8 6 4 11 11 H 1.48508 * 109.47289 * 330.00152 * 8 6 4 12 12 N 1.46506 * 109.47012 * 239.99903 * 2 1 3 13 13 C 1.34776 * 119.99716 * 84.99855 * 12 2 1 14 14 O 1.21275 * 120.00110 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99562 * 179.97438 * 13 12 2 16 16 H 1.09005 * 109.49756 * 59.93716 * 15 13 12 17 17 C 1.53036 * 109.52961 * 299.85514 * 15 13 12 18 18 C 1.53041 * 109.54396 * 178.66551 * 17 15 13 19 19 C 1.52763 * 109.38062 * 61.24190 * 18 17 15 20 20 N 1.46928 * 109.00599 * 305.58997 * 19 18 17 21 21 C 1.34778 * 120.63180 * 233.58569 * 20 19 18 22 22 O 1.21277 * 120.00426 * 179.72310 * 21 20 19 23 23 C 1.50706 * 119.99906 * 359.71703 * 21 20 19 24 24 C 1.52995 * 117.50181 * 248.75034 * 23 21 20 25 25 C 1.52993 * 117.50081 * 180.08799 * 23 21 20 26 26 C 1.46928 * 118.74200 * 53.30988 * 20 19 18 27 27 H 1.09003 * 109.47084 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46715 * 300.00273 * 1 2 3 29 29 H 1.08993 * 109.47106 * 59.99979 * 1 2 3 30 30 H 0.97006 * 120.00091 * 179.97438 * 7 6 4 31 31 H 0.96999 * 119.99424 * 264.99770 * 12 2 1 32 32 H 1.09000 * 109.46114 * 298.68923 * 17 15 13 33 33 H 1.09004 * 109.45877 * 58.66182 * 17 15 13 34 34 H 1.08999 * 109.49770 * 181.31546 * 18 17 15 35 35 H 1.09004 * 109.49634 * 301.38779 * 18 17 15 36 36 H 1.08999 * 109.51050 * 185.70973 * 19 18 17 37 37 H 1.08994 * 109.43252 * 65.42210 * 19 18 17 38 38 H 1.08998 * 115.54512 * 34.41796 * 23 21 20 39 39 H 1.09000 * 117.49859 * 0.02562 * 24 23 21 40 40 H 1.08999 * 117.49900 * 145.01759 * 24 23 21 41 41 H 1.08998 * 117.50372 * 214.98309 * 25 23 21 42 42 H 1.09006 * 117.50059 * 359.97438 * 25 23 21 43 43 H 1.09004 * 109.58350 * 66.43153 * 26 20 19 44 44 H 1.08999 * 109.58892 * 186.71565 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1382 -0.8589 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8744 2.6993 10 1 0.9772 1.9955 3.9070 11 1 0.8490 2.1773 1.4922 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3572 14 8 1.8581 1.1583 -2.4117 15 6 2.6498 -0.7286 -3.5874 16 1 1.9785 -1.5518 -3.8322 17 6 4.0544 -1.2761 -3.3239 18 6 4.5521 -2.0261 -4.5616 19 6 4.6227 -1.0619 -5.7443 20 7 3.3136 -0.4170 -5.9148 21 6 2.6836 -0.4463 -7.1059 22 8 1.6009 0.0854 -7.2326 23 6 3.3245 -1.1398 -8.2805 24 6 3.8078 -0.2656 -9.4394 25 6 2.5602 -1.1367 -9.6059 26 6 2.7014 0.2552 -4.7606 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.9041 -0.5273 4.4376 31 1 2.2490 -1.6318 -1.1525 32 1 4.7307 -0.4502 -3.1035 33 1 4.0248 -1.9579 -2.4739 34 1 5.5429 -2.4357 -4.3649 35 1 3.8631 -2.8374 -4.7969 36 1 4.8789 -1.6135 -6.6489 37 1 5.3809 -0.3036 -5.5492 38 1 3.9113 -2.0262 -8.0400 39 1 3.6626 0.8112 -9.3521 40 1 4.7124 -0.5771 -9.9616 41 1 2.6444 -2.0209 -10.2376 42 1 1.5935 -0.6334 -9.6282 43 1 3.2998 1.1231 -4.4837 44 1 1.6913 0.5745 -5.0171 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194645073.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:03 Heat of formation + Delta-G solvation = -49.892467 kcal Electronic energy + Delta-G solvation = -24088.234861 eV Core-core repulsion = 20620.178011 eV Total energy + Delta-G solvation = -3468.056850 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.65864 -39.32722 -37.47793 -36.21612 -35.04064 -33.25065 -32.27607 -31.43858 -29.71886 -26.30700 -25.24429 -24.77289 -23.22663 -22.73536 -21.76948 -20.53484 -19.49052 -18.98222 -17.91603 -17.16918 -16.26538 -15.94219 -15.62942 -15.47268 -14.83123 -14.79287 -14.45834 -14.28682 -14.11329 -13.46621 -13.23876 -13.06740 -12.87856 -12.65787 -12.62637 -12.20279 -11.89336 -11.79311 -11.58759 -11.33864 -11.26247 -11.07859 -10.87128 -10.82634 -10.80161 -10.67207 -10.19415 -9.93105 -9.70470 -9.24400 -9.15623 -8.78959 -8.73830 -8.16910 -6.22500 -4.25026 2.31082 2.73077 3.17718 3.23575 3.35081 3.40013 3.54234 3.94547 4.18343 4.30879 4.40105 4.54890 4.56892 4.68386 4.73300 4.79624 4.87810 5.12084 5.13396 5.24739 5.25256 5.33602 5.41774 5.52698 5.58910 5.61750 5.66998 5.79716 5.81724 5.88682 6.07066 6.16222 6.30524 6.34684 6.39165 6.56263 6.85763 7.17852 7.23868 7.27603 7.50860 8.03114 8.12763 8.50706 8.73805 8.90815 9.38639 10.89620 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034432 B = 0.003210 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.000312 B = 8719.544697 C = 9218.042799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.236 3.764 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.893 5.893 8 Si 0.885 3.115 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.699 5.699 13 C 0.511 3.489 14 O -0.554 6.554 15 C -0.122 4.122 16 H 0.096 0.904 17 C -0.113 4.113 18 C -0.134 4.134 19 C 0.105 3.895 20 N -0.608 5.608 21 C 0.543 3.457 22 O -0.540 6.540 23 C -0.195 4.195 24 C -0.152 4.152 25 C -0.149 4.149 26 C 0.133 3.867 27 H 0.053 0.947 28 H 0.047 0.953 29 H 0.036 0.964 30 H 0.267 0.733 31 H 0.395 0.605 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.125 0.875 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.966 -4.371 -22.797 24.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.133 3.867 3 H 0.066 0.934 4 C -0.573 4.573 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.715 3.285 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.346 5.346 13 C 0.295 3.705 14 O -0.433 6.433 15 C -0.144 4.144 16 H 0.114 0.886 17 C -0.151 4.151 18 C -0.172 4.172 19 C -0.018 4.018 20 N -0.340 5.340 21 C 0.331 3.669 22 O -0.417 6.417 23 C -0.216 4.216 24 C -0.190 4.190 25 C -0.186 4.186 26 C 0.011 3.989 27 H 0.072 0.928 28 H 0.065 0.935 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.228 0.772 32 H 0.091 0.909 33 H 0.096 0.904 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.143 0.857 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.097 0.903 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 6.182 -3.237 -22.657 23.707 hybrid contribution -0.397 0.074 0.545 0.679 sum 5.784 -3.163 -22.111 23.073 Atomic orbital electron populations 1.22455 0.99333 1.00857 0.99356 1.19108 0.90132 0.94682 0.82808 0.93367 1.21032 1.33272 1.14408 0.88540 0.90224 1.24830 0.95477 0.96710 0.95529 1.69866 1.44911 1.40134 0.98050 0.86876 0.80550 0.83614 0.77443 1.20299 1.22163 1.18639 1.46182 1.64918 1.13793 1.09738 1.20223 0.78393 0.87324 0.84554 1.90667 1.51419 1.16095 1.85156 1.21657 0.98736 0.99660 0.94364 0.88587 1.21532 0.94703 1.00675 0.98170 1.21870 1.02407 0.98200 0.94771 1.21751 0.84528 0.96175 0.99376 1.48057 1.20406 1.55457 1.10116 1.19660 0.84641 0.79496 0.83090 1.90706 1.21033 1.46368 1.83574 1.22232 1.06704 1.03169 0.89504 1.22942 0.98995 0.98320 0.98735 1.22971 0.97334 1.02311 0.96008 1.21365 1.00984 0.93661 0.82928 0.92833 0.93453 0.94504 0.92280 0.77181 0.90874 0.90381 0.90026 0.91225 0.89488 0.90993 0.85699 0.88239 0.87781 0.87925 0.87396 0.90327 0.88340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 8.96 37.16 0.33 -3.34 16 2 C 0.24 5.62 2.15 -69.08 -0.15 5.47 16 3 H 0.05 1.27 6.63 -51.93 -0.34 0.93 16 4 C -0.53 -14.34 9.31 -34.44 -0.32 -14.66 16 5 H 0.08 2.23 7.98 -52.49 -0.42 1.81 16 6 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 7 N -0.89 -26.33 13.96 55.43 0.77 -25.55 16 8 Si 0.89 21.87 24.37 -169.99 -4.14 17.72 16 9 H -0.28 -6.62 6.87 56.52 0.39 -6.24 16 10 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 11 H -0.26 -6.45 6.53 56.52 0.37 -6.08 16 12 N -0.70 -13.62 4.96 -54.93 -0.27 -13.90 16 13 C 0.51 9.47 7.12 -10.99 -0.08 9.39 16 14 O -0.55 -12.42 15.59 5.56 0.09 -12.34 16 15 C -0.12 -1.66 2.67 -91.65 -0.25 -1.90 16 16 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 17 C -0.11 -1.22 5.08 -26.69 -0.14 -1.36 16 18 C -0.13 -1.04 6.07 -26.83 -0.16 -1.21 16 19 C 0.10 0.82 6.32 -3.93 -0.02 0.79 16 20 N -0.61 -6.95 2.98 -173.03 -0.52 -7.47 16 21 C 0.54 6.80 7.48 -10.98 -0.08 6.72 16 22 O -0.54 -9.01 15.67 5.56 0.09 -8.92 16 23 C -0.20 -1.64 5.13 -91.77 -0.47 -2.11 16 24 C -0.15 -1.07 10.24 -26.70 -0.27 -1.34 16 25 C -0.15 -1.16 10.05 -26.70 -0.27 -1.43 16 26 C 0.13 1.88 5.07 -3.71 -0.02 1.86 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 28 H 0.05 1.11 3.27 -51.92 -0.17 0.94 16 29 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.39 6.73 7.95 -40.82 -0.32 6.41 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.08 0.84 7.54 -51.93 -0.39 0.45 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.09 0.48 5.51 -51.93 -0.29 0.19 16 37 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.13 0.75 6.56 -51.93 -0.34 0.41 16 39 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.11 1.05 7.67 -51.93 -0.40 0.65 16 43 H 0.08 1.16 7.96 -51.93 -0.41 0.75 16 44 H 0.10 1.65 7.00 -51.93 -0.36 1.28 16 LS Contribution 346.93 15.07 5.23 5.23 Total: -1.00 -33.68 346.93 -7.61 -41.29 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -6.86 Total: 4.95 kcal Atomic # 6 Polarization: 0.97 SS G_CDS: -1.99 Total: -1.02 kcal Atomic # 7 Polarization: -46.90 SS G_CDS: -0.01 Total: -46.92 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: 0.17 Total: -21.26 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.14 Total: 17.72 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.68 -7.61 -41.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194645073.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.602 kcal (2) G-P(sol) polarization free energy of solvation -33.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds