Wall clock time and date at job start Tue Mar 31 2020 07:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47104 * 2 1 4 4 C 1.50701 * 109.47500 * 119.99895 * 2 1 3 5 5 H 1.07997 * 120.00292 * 119.99643 * 4 2 1 6 6 C 1.37881 * 119.99826 * 300.00297 * 4 2 1 7 7 N 1.31507 * 119.99861 * 180.02562 * 6 4 2 8 8 Si 1.86796 * 120.00051 * 359.97438 * 6 4 2 9 9 H 1.48499 * 109.47268 * 89.99958 * 8 6 4 10 10 H 1.48501 * 109.47437 * 210.00399 * 8 6 4 11 11 H 1.48508 * 109.47289 * 330.00152 * 8 6 4 12 12 N 1.46506 * 109.47012 * 239.99903 * 2 1 3 13 13 C 1.34776 * 119.99716 * 84.99855 * 12 2 1 14 14 O 1.21275 * 120.00110 * 359.97438 * 13 12 2 15 15 C 1.50697 * 119.99562 * 179.97438 * 13 12 2 16 16 H 1.09005 * 109.49756 * 59.93716 * 15 13 12 17 17 C 1.53036 * 109.52961 * 299.85514 * 15 13 12 18 18 C 1.53041 * 109.54396 * 178.66551 * 17 15 13 19 19 C 1.52763 * 109.38062 * 61.24190 * 18 17 15 20 20 N 1.46928 * 109.00599 * 305.58997 * 19 18 17 21 21 C 1.34778 * 120.63180 * 233.58569 * 20 19 18 22 22 O 1.21277 * 120.00426 * 179.72310 * 21 20 19 23 23 C 1.50706 * 119.99906 * 359.71703 * 21 20 19 24 24 C 1.52995 * 117.50181 * 248.75034 * 23 21 20 25 25 C 1.52993 * 117.50081 * 180.08799 * 23 21 20 26 26 C 1.46928 * 118.74200 * 53.30988 * 20 19 18 27 27 H 1.09003 * 109.47084 * 180.02562 * 1 2 3 28 28 H 1.09008 * 109.46715 * 300.00273 * 1 2 3 29 29 H 1.08993 * 109.47106 * 59.99979 * 1 2 3 30 30 H 0.97006 * 120.00091 * 179.97438 * 7 6 4 31 31 H 0.96999 * 119.99424 * 264.99770 * 12 2 1 32 32 H 1.09000 * 109.46114 * 298.68923 * 17 15 13 33 33 H 1.09004 * 109.45877 * 58.66182 * 17 15 13 34 34 H 1.08999 * 109.49770 * 181.31546 * 18 17 15 35 35 H 1.09004 * 109.49634 * 301.38779 * 18 17 15 36 36 H 1.08999 * 109.51050 * 185.70973 * 19 18 17 37 37 H 1.08994 * 109.43252 * 65.42210 * 19 18 17 38 38 H 1.08998 * 115.54512 * 34.41796 * 23 21 20 39 39 H 1.09000 * 117.49859 * 0.02562 * 24 23 21 40 40 H 1.08999 * 117.49900 * 145.01759 * 24 23 21 41 41 H 1.08998 * 117.50372 * 214.98309 * 25 23 21 42 42 H 1.09006 * 117.50059 * 359.97438 * 25 23 21 43 43 H 1.09004 * 109.58350 * 66.43153 * 26 20 19 44 44 H 1.08999 * 109.58892 * 186.71565 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1382 -0.8589 3.5565 8 14 0.6259 1.2798 2.6541 9 1 -0.8020 0.8744 2.6993 10 1 0.9772 1.9955 3.9070 11 1 0.8490 2.1773 1.4922 12 7 2.0183 -0.6907 -1.1962 13 6 2.1470 -0.0183 -2.3572 14 8 1.8581 1.1583 -2.4117 15 6 2.6498 -0.7286 -3.5874 16 1 1.9785 -1.5518 -3.8322 17 6 4.0544 -1.2761 -3.3239 18 6 4.5521 -2.0261 -4.5616 19 6 4.6227 -1.0619 -5.7443 20 7 3.3136 -0.4170 -5.9148 21 6 2.6836 -0.4463 -7.1059 22 8 1.6009 0.0854 -7.2326 23 6 3.3245 -1.1398 -8.2805 24 6 3.8078 -0.2656 -9.4394 25 6 2.5602 -1.1367 -9.6059 26 6 2.7014 0.2552 -4.7606 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.9041 -0.5273 4.4376 31 1 2.2490 -1.6318 -1.1525 32 1 4.7307 -0.4502 -3.1035 33 1 4.0248 -1.9579 -2.4739 34 1 5.5429 -2.4357 -4.3649 35 1 3.8631 -2.8374 -4.7969 36 1 4.8789 -1.6135 -6.6489 37 1 5.3809 -0.3036 -5.5492 38 1 3.9113 -2.0262 -8.0400 39 1 3.6626 0.8112 -9.3521 40 1 4.7124 -0.5771 -9.9616 41 1 2.6444 -2.0209 -10.2376 42 1 1.5935 -0.6334 -9.6282 43 1 3.2998 1.1231 -4.4837 44 1 1.6913 0.5745 -5.0171 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194645073.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:03 Heat of formation + Delta-G solvation = -73.782609 kcal Electronic energy + Delta-G solvation = -24089.270815 eV Core-core repulsion = 20620.178011 eV Total energy + Delta-G solvation = -3469.092804 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.68997 -40.68419 -38.49664 -36.99228 -36.86918 -34.59749 -34.00609 -32.42821 -31.44166 -27.31616 -27.18005 -25.80119 -24.18812 -23.29061 -23.02431 -21.92512 -21.03053 -19.84001 -19.13227 -18.56351 -17.73972 -17.47989 -16.83418 -16.62620 -16.20674 -15.88189 -15.55244 -15.33171 -15.05299 -15.00359 -14.84130 -14.39002 -14.16373 -13.97745 -13.76542 -13.61814 -13.39823 -13.19572 -12.82265 -12.54794 -12.43664 -12.17774 -12.11444 -11.97436 -11.67761 -11.62874 -11.49045 -11.36645 -11.30354 -10.91542 -10.89408 -10.65519 -9.92689 -9.73497 -8.39965 -6.45320 1.25333 1.33686 1.42105 1.42902 1.67505 1.79923 2.24189 2.48226 2.92579 2.96322 3.41763 3.59390 3.76789 3.80668 3.85441 3.98627 4.07083 4.08951 4.20046 4.24715 4.42100 4.52303 4.52946 4.62309 4.68320 4.73697 4.76091 4.78705 4.89715 4.94094 4.96344 5.05379 5.08677 5.13160 5.24827 5.28508 5.36266 5.39268 5.44741 5.61089 6.11266 6.36660 6.55961 6.81599 7.10168 7.17294 7.39599 8.75049 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.034432 B = 0.003210 C = 0.003037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.000312 B = 8719.544697 C = 9218.042799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.241 3.759 3 H 0.022 0.978 4 C -0.531 4.531 5 H 0.061 0.939 6 C 0.032 3.968 7 N -0.931 5.931 8 Si 0.935 3.065 9 H -0.261 1.261 10 H -0.291 1.291 11 H -0.265 1.265 12 N -0.695 5.695 13 C 0.509 3.491 14 O -0.596 6.596 15 C -0.106 4.106 16 H 0.110 0.890 17 C -0.112 4.112 18 C -0.125 4.125 19 C 0.098 3.902 20 N -0.604 5.604 21 C 0.532 3.468 22 O -0.595 6.595 23 C -0.196 4.196 24 C -0.139 4.139 25 C -0.156 4.156 26 C 0.139 3.861 27 H 0.066 0.934 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.271 0.729 31 H 0.408 0.592 32 H 0.065 0.935 33 H 0.081 0.919 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.122 0.878 37 H 0.080 0.920 38 H 0.161 0.839 39 H 0.081 0.919 40 H 0.139 0.861 41 H 0.131 0.869 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.458 -6.045 -24.814 26.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.136 3.864 3 H 0.039 0.961 4 C -0.569 4.569 5 H 0.079 0.921 6 C -0.168 4.168 7 N -0.570 5.570 8 Si 0.763 3.237 9 H -0.187 1.187 10 H -0.218 1.218 11 H -0.190 1.190 12 N -0.344 5.344 13 C 0.295 3.705 14 O -0.477 6.477 15 C -0.128 4.128 16 H 0.128 0.872 17 C -0.150 4.150 18 C -0.163 4.163 19 C -0.023 4.023 20 N -0.335 5.335 21 C 0.322 3.678 22 O -0.476 6.476 23 C -0.217 4.217 24 C -0.176 4.176 25 C -0.193 4.193 26 C 0.015 3.985 27 H 0.085 0.915 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.080 0.920 31 H 0.244 0.756 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.130 0.870 35 H 0.096 0.904 36 H 0.140 0.860 37 H 0.098 0.902 38 H 0.178 0.822 39 H 0.100 0.900 40 H 0.157 0.843 41 H 0.149 0.851 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.712 -4.955 -24.688 26.335 hybrid contribution -0.816 0.603 1.144 1.530 sum 6.896 -4.352 -23.544 24.916 Atomic orbital electron populations 1.22367 0.98140 1.01697 0.99309 1.18765 0.90998 0.93231 0.83380 0.96054 1.21225 1.32338 1.13620 0.89683 0.92077 1.25500 0.96766 0.99137 0.95440 1.69958 1.46585 1.41825 0.98632 0.86062 0.79877 0.80615 0.77157 1.18702 1.21834 1.19022 1.45997 1.65061 1.14357 1.08989 1.21062 0.77110 0.86906 0.85382 1.90646 1.53003 1.18214 1.85884 1.21569 1.00838 0.99109 0.91251 0.87229 1.21587 0.92334 1.00775 1.00306 1.21867 1.04048 0.97738 0.92647 1.22109 0.82466 0.96590 1.01122 1.48156 1.21500 1.54947 1.08912 1.20530 0.84123 0.78900 0.84204 1.90681 1.23649 1.48805 1.84485 1.22306 1.07308 1.04250 0.87808 1.23053 0.99829 0.97222 0.97515 1.23038 0.96473 1.03521 0.96252 1.21038 0.99239 0.93901 0.84350 0.91528 0.94053 0.93949 0.92012 0.75608 0.91626 0.90065 0.87045 0.90431 0.86023 0.90193 0.82151 0.90043 0.84329 0.85084 0.90315 0.91583 0.91778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.02 8.96 71.98 0.65 -6.37 16 2 C 0.24 11.53 2.15 44.24 0.10 11.62 16 3 H 0.02 1.15 6.63 -2.39 -0.02 1.14 16 4 C -0.53 -28.65 9.31 25.60 0.24 -28.42 16 5 H 0.06 3.46 7.98 -2.91 -0.02 3.44 16 6 C 0.03 1.78 5.45 84.66 0.46 2.24 16 7 N -0.93 -55.37 13.96 21.45 0.30 -55.07 16 8 Si 0.94 45.09 24.37 68.60 1.67 46.76 16 9 H -0.26 -11.90 6.87 99.48 0.68 -11.22 16 10 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 11 H -0.27 -12.86 6.53 99.48 0.65 -12.21 16 12 N -0.70 -27.02 4.96 -446.09 -2.21 -29.24 16 13 C 0.51 19.01 7.12 87.66 0.62 19.64 16 14 O -0.60 -27.52 15.59 -3.02 -0.05 -27.56 16 15 C -0.11 -2.81 2.67 -11.46 -0.03 -2.84 16 16 H 0.11 2.66 8.14 -2.38 -0.02 2.64 16 17 C -0.11 -2.19 5.08 30.62 0.16 -2.04 16 18 C -0.13 -1.44 6.07 30.53 0.19 -1.25 16 19 C 0.10 1.17 6.32 86.22 0.54 1.71 16 20 N -0.60 -13.01 2.98 -819.72 -2.44 -15.45 16 21 C 0.53 12.93 7.48 87.66 0.66 13.59 16 22 O -0.60 -20.70 15.67 -3.02 -0.05 -20.75 16 23 C -0.20 -2.73 5.13 -11.54 -0.06 -2.79 16 24 C -0.14 -1.55 10.24 30.62 0.31 -1.24 16 25 C -0.16 -2.12 10.05 30.62 0.31 -1.81 16 26 C 0.14 3.99 5.07 86.36 0.44 4.43 16 27 H 0.07 2.76 8.14 -2.39 -0.02 2.74 16 28 H 0.04 1.88 3.27 -2.38 -0.01 1.88 16 29 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.27 15.12 8.31 -92.70 -0.77 14.35 16 31 H 0.41 13.61 7.95 -92.71 -0.74 12.88 16 32 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.08 1.57 7.54 -2.39 -0.02 1.55 16 34 H 0.11 0.74 8.14 -2.39 -0.02 0.73 16 35 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 36 H 0.12 0.66 5.51 -2.39 -0.01 0.65 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.16 1.06 6.56 -2.39 -0.02 1.05 16 39 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.14 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 1.55 7.67 -2.38 -0.02 1.53 16 43 H 0.07 2.04 7.96 -2.39 -0.02 2.02 16 44 H 0.06 2.29 7.00 -2.39 -0.02 2.27 16 Total: -1.00 -76.83 346.93 1.99 -74.84 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.19 Total: 20.00 kcal Atomic # 6 Polarization: 1.91 SS G_CDS: 4.57 Total: 6.48 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -4.35 Total: -99.76 kcal Atomic # 8 Polarization: -48.22 SS G_CDS: -0.09 Total: -48.31 kcal Atomic # 14 Polarization: 45.09 SS G_CDS: 1.67 Total: 46.76 kcal Total: -76.83 1.99 -74.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194645073.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.056 kcal (2) G-P(sol) polarization free energy of solvation -76.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds