Wall clock time and date at job start Tue Mar 31 2020 07:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46724 * 2 1 4 4 C 1.50698 * 109.47205 * 240.00551 * 2 1 3 5 5 H 1.08002 * 119.99842 * 245.46047 * 4 2 1 6 6 C 1.37875 * 120.00106 * 65.45420 * 4 2 1 7 7 N 1.31517 * 120.00331 * 9.56365 * 6 4 2 8 8 Si 1.86799 * 120.00146 * 189.56012 * 6 4 2 9 9 H 1.48503 * 109.47413 * 84.99635 * 8 6 4 10 10 H 1.48502 * 109.47359 * 204.99658 * 8 6 4 11 11 H 1.48499 * 109.47216 * 324.99699 * 8 6 4 12 12 N 1.46492 * 109.47477 * 120.00335 * 2 1 3 13 13 C 1.34781 * 120.00025 * 275.00336 * 12 2 1 14 14 O 1.21282 * 119.99804 * 359.97438 * 13 12 2 15 15 C 1.50697 * 120.00172 * 179.97438 * 13 12 2 16 16 H 1.09004 * 109.49951 * 59.93422 * 15 13 12 17 17 C 1.53040 * 109.52647 * 299.85597 * 15 13 12 18 18 C 1.53037 * 109.54041 * 178.66898 * 17 15 13 19 19 C 1.52760 * 109.38625 * 61.23408 * 18 17 15 20 20 N 1.46924 * 109.00947 * 305.59618 * 19 18 17 21 21 C 1.34783 * 120.62600 * 233.58328 * 20 19 18 22 22 O 1.21279 * 120.00057 * 179.71633 * 21 20 19 23 23 C 1.50703 * 119.99994 * 359.71542 * 21 20 19 24 24 C 1.53000 * 117.49858 * 248.75129 * 23 21 20 25 25 C 1.53000 * 117.49572 * 180.08931 * 23 21 20 26 26 C 1.46919 * 118.74216 * 53.30326 * 20 19 18 27 27 H 1.08999 * 109.46719 * 183.67431 * 1 2 3 28 28 H 1.08994 * 109.47082 * 303.67245 * 1 2 3 29 29 H 1.08998 * 109.47187 * 63.67511 * 1 2 3 30 30 H 0.96998 * 120.00265 * 179.97438 * 7 6 4 31 31 H 0.96999 * 120.00341 * 95.00040 * 12 2 1 32 32 H 1.09005 * 109.45984 * 298.68670 * 17 15 13 33 33 H 1.09001 * 109.46232 * 58.64333 * 17 15 13 34 34 H 1.08997 * 109.49914 * 181.31577 * 18 17 15 35 35 H 1.08998 * 109.49476 * 301.37533 * 18 17 15 36 36 H 1.09001 * 109.51436 * 185.70384 * 19 18 17 37 37 H 1.09005 * 109.42836 * 65.42379 * 19 18 17 38 38 H 1.08998 * 115.54982 * 34.42088 * 23 21 20 39 39 H 1.08999 * 117.49713 * 359.97438 * 24 23 21 40 40 H 1.08995 * 117.49903 * 145.02306 * 24 23 21 41 41 H 1.09002 * 117.49705 * 214.98085 * 25 23 21 42 42 H 1.08994 * 117.50287 * 359.97438 * 25 23 21 43 43 H 1.08995 * 109.58915 * 66.43515 * 26 20 19 44 44 H 1.09005 * 109.58800 * 186.85751 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5786 -1.6369 -1.1339 6 6 1.7945 -0.1772 -2.4796 7 7 1.2992 1.0358 -2.5935 8 14 2.1759 -1.1778 -4.0102 9 1 1.0240 -2.0608 -4.3242 10 1 2.4226 -0.2611 -5.1522 11 1 3.3844 -2.0070 -3.7712 12 7 2.0184 -0.6906 1.1960 13 6 2.1471 -0.0183 2.3571 14 8 1.8590 1.1585 2.4115 15 6 2.6490 -0.7289 3.5876 16 1 3.6477 -1.1226 3.3986 17 6 1.7032 -1.8809 3.9346 18 6 2.2304 -2.6233 5.1646 19 6 2.2810 -1.6642 6.3526 20 7 3.0670 -0.4805 5.9788 21 6 4.1077 -0.0802 6.7360 22 8 4.7520 0.8956 6.4141 23 6 4.4708 -0.8452 7.9826 24 6 4.2358 -0.1557 9.3281 25 6 5.6610 -0.3393 8.8003 26 6 2.7008 0.2549 4.7608 27 1 -0.3633 -1.0256 0.0659 28 1 -0.3633 0.5698 0.8552 29 1 -0.3633 0.4557 -0.9211 30 1 1.1322 1.4109 -3.4723 31 1 2.2492 -1.6318 1.1525 32 1 0.7105 -1.4842 4.1477 33 1 1.6454 -2.5697 3.0918 34 1 1.5689 -3.4578 5.3971 35 1 3.2327 -2.9996 4.9605 36 1 2.7500 -2.1611 7.2019 37 1 1.2680 -1.3614 6.6175 38 1 4.3144 -1.9228 7.9352 39 1 3.8190 0.8513 9.3116 40 1 3.9253 -0.7798 10.1660 41 1 6.2873 -1.0843 9.2911 42 1 6.1816 0.5464 8.4364 43 1 1.7228 0.7174 4.8932 44 1 3.4468 1.0239 4.5601 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194645090.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:06 Heat of formation + Delta-G solvation = -59.193849 kcal Electronic energy + Delta-G solvation = -24014.966269 eV Core-core repulsion = 20546.506081 eV Total energy + Delta-G solvation = -3468.460188 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.59613 -39.17834 -37.37860 -36.17345 -34.79963 -33.18918 -32.20447 -31.35577 -28.94006 -26.24654 -25.23648 -24.71426 -23.16519 -22.70245 -21.67031 -20.54045 -19.26824 -18.94084 -17.86423 -17.03347 -16.19653 -15.71244 -15.56223 -15.14655 -14.77206 -14.67717 -14.44803 -14.26114 -14.05090 -13.43691 -13.09905 -12.87497 -12.70719 -12.57975 -12.39348 -11.86334 -11.78702 -11.51705 -11.28983 -11.08916 -11.05841 -11.01193 -10.83914 -10.79219 -10.74076 -10.61669 -10.36998 -10.27445 -9.87922 -9.12853 -9.02721 -8.67847 -8.50819 -7.93454 -6.14887 -4.20597 2.35811 2.78452 3.24448 3.31116 3.32520 3.36037 3.57824 4.08296 4.22318 4.36618 4.44623 4.57995 4.61061 4.71352 4.77711 4.83223 4.94356 5.18482 5.19181 5.27829 5.28864 5.38937 5.45394 5.61832 5.62909 5.65195 5.69531 5.83997 5.85935 5.92105 6.13746 6.20179 6.40976 6.74478 6.87697 7.07153 7.28739 7.42239 7.54154 7.66651 7.84371 8.06273 8.08422 8.66033 8.78845 9.11661 9.45556 10.93625 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031300 B = 0.003030 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.346728 B = 9240.089370 C = 9372.244481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.537 4.537 5 H 0.061 0.939 6 C 0.068 3.932 7 N -0.881 5.881 8 Si 0.898 3.102 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.706 5.706 13 C 0.509 3.491 14 O -0.553 6.553 15 C -0.123 4.123 16 H 0.095 0.905 17 C -0.111 4.111 18 C -0.134 4.134 19 C 0.105 3.895 20 N -0.608 5.608 21 C 0.542 3.458 22 O -0.538 6.538 23 C -0.195 4.195 24 C -0.153 4.153 25 C -0.149 4.149 26 C 0.133 3.867 27 H 0.028 0.972 28 H 0.019 0.981 29 H 0.072 0.928 30 H 0.265 0.735 31 H 0.388 0.612 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.071 0.929 38 H 0.125 0.875 39 H 0.099 0.901 40 H 0.104 0.896 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.388 -9.986 21.660 23.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.160 3.840 3 H 0.073 0.927 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.135 4.135 7 N -0.517 5.517 8 Si 0.725 3.275 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.353 5.353 13 C 0.293 3.707 14 O -0.432 6.432 15 C -0.146 4.146 16 H 0.113 0.887 17 C -0.149 4.149 18 C -0.173 4.173 19 C -0.018 4.018 20 N -0.341 5.341 21 C 0.330 3.670 22 O -0.415 6.415 23 C -0.216 4.216 24 C -0.190 4.190 25 C -0.186 4.186 26 C 0.011 3.989 27 H 0.047 0.953 28 H 0.038 0.962 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.220 0.780 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.089 0.911 38 H 0.143 0.857 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.096 0.904 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 2.451 -8.451 21.337 23.080 hybrid contribution 0.156 -1.200 -1.097 1.633 sum 2.607 -9.651 20.240 22.574 Atomic orbital electron populations 1.22004 0.98865 0.98518 1.00517 1.18755 0.90540 0.94607 0.80090 0.92679 1.21165 1.37236 1.08668 0.90474 0.92118 1.24894 0.94971 0.94622 0.99055 1.69984 1.43792 1.13717 1.24250 0.86522 0.78702 0.79944 0.82288 1.20424 1.21151 1.19910 1.46495 1.64907 1.13473 1.10460 1.20155 0.78709 0.87342 0.84537 1.90674 1.51282 1.16006 1.85201 1.21677 1.01258 0.97147 0.94496 0.88718 1.21512 0.98820 0.96360 0.98215 1.21868 1.02351 0.97993 0.95053 1.21733 0.96396 0.85936 0.97721 1.48061 1.30979 1.29414 1.25606 1.19658 0.79270 0.84205 0.83828 1.90712 1.51519 1.27536 1.71770 1.22233 1.07528 1.00193 0.91635 1.22944 0.99934 1.02027 0.94108 1.22973 0.90755 1.03850 1.01055 1.21372 1.02719 0.93542 0.81269 0.95295 0.96181 0.90904 0.92528 0.77998 0.91034 0.90655 0.90175 0.91232 0.89535 0.91063 0.85742 0.88227 0.87812 0.87948 0.87369 0.90363 0.88285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.41 9.36 37.16 0.35 -3.06 16 2 C 0.26 6.65 2.42 -69.09 -0.17 6.48 16 3 H 0.06 1.65 7.52 -51.93 -0.39 1.26 16 4 C -0.54 -14.25 8.66 -34.44 -0.30 -14.55 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.86 5.17 -17.82 -0.09 1.76 16 7 N -0.88 -25.21 12.16 55.43 0.67 -24.54 16 8 Si 0.90 20.67 29.55 -169.99 -5.02 15.65 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 12 N -0.71 -14.48 4.96 -54.93 -0.27 -14.75 16 13 C 0.51 10.03 7.12 -10.98 -0.08 9.95 16 14 O -0.55 -13.26 15.58 5.56 0.09 -13.17 16 15 C -0.12 -1.78 2.67 -91.65 -0.25 -2.02 16 16 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 17 C -0.11 -1.22 5.08 -26.69 -0.14 -1.36 16 18 C -0.13 -1.06 6.06 -26.84 -0.16 -1.23 16 19 C 0.11 0.85 6.32 -3.93 -0.02 0.82 16 20 N -0.61 -7.28 2.98 -173.03 -0.52 -7.79 16 21 C 0.54 7.09 7.48 -10.98 -0.08 7.01 16 22 O -0.54 -9.36 15.67 5.56 0.09 -9.27 16 23 C -0.19 -1.72 5.13 -91.77 -0.47 -2.19 16 24 C -0.15 -1.12 10.24 -26.69 -0.27 -1.39 16 25 C -0.15 -1.22 10.05 -26.69 -0.27 -1.49 16 26 C 0.13 1.99 5.07 -3.71 -0.02 1.97 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 1.92 6.83 -51.93 -0.35 1.56 16 30 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 31 H 0.39 6.83 7.94 -40.82 -0.32 6.50 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.80 7.54 -51.93 -0.39 0.41 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.50 5.51 -51.93 -0.29 0.21 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.12 0.79 6.56 -51.93 -0.34 0.45 16 39 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.11 1.09 7.67 -51.93 -0.40 0.70 16 43 H 0.08 1.21 7.96 -51.93 -0.41 0.80 16 44 H 0.10 1.76 7.01 -51.93 -0.36 1.40 16 LS Contribution 355.05 15.07 5.35 5.35 Total: -1.00 -33.30 355.05 -8.61 -41.91 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -7.03 Total: 5.89 kcal Atomic # 6 Polarization: 2.69 SS G_CDS: -1.97 Total: 0.72 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: -0.11 Total: -47.08 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: 0.17 Total: -22.44 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.30 -8.61 -41.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194645090.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.284 kcal (2) G-P(sol) polarization free energy of solvation -33.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds