Wall clock time and date at job start Tue Mar 31 2020 07:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09006 * 109.46724 * 2 1 4 4 C 1.50698 * 109.47205 * 240.00551 * 2 1 3 5 5 H 1.08002 * 119.99842 * 245.46047 * 4 2 1 6 6 C 1.37875 * 120.00106 * 65.45420 * 4 2 1 7 7 N 1.31517 * 120.00331 * 9.56365 * 6 4 2 8 8 Si 1.86799 * 120.00146 * 189.56012 * 6 4 2 9 9 H 1.48503 * 109.47413 * 84.99635 * 8 6 4 10 10 H 1.48502 * 109.47359 * 204.99658 * 8 6 4 11 11 H 1.48499 * 109.47216 * 324.99699 * 8 6 4 12 12 N 1.46492 * 109.47477 * 120.00335 * 2 1 3 13 13 C 1.34781 * 120.00025 * 275.00336 * 12 2 1 14 14 O 1.21282 * 119.99804 * 359.97438 * 13 12 2 15 15 C 1.50697 * 120.00172 * 179.97438 * 13 12 2 16 16 H 1.09004 * 109.49951 * 59.93422 * 15 13 12 17 17 C 1.53040 * 109.52647 * 299.85597 * 15 13 12 18 18 C 1.53037 * 109.54041 * 178.66898 * 17 15 13 19 19 C 1.52760 * 109.38625 * 61.23408 * 18 17 15 20 20 N 1.46924 * 109.00947 * 305.59618 * 19 18 17 21 21 C 1.34783 * 120.62600 * 233.58328 * 20 19 18 22 22 O 1.21279 * 120.00057 * 179.71633 * 21 20 19 23 23 C 1.50703 * 119.99994 * 359.71542 * 21 20 19 24 24 C 1.53000 * 117.49858 * 248.75129 * 23 21 20 25 25 C 1.53000 * 117.49572 * 180.08931 * 23 21 20 26 26 C 1.46919 * 118.74216 * 53.30326 * 20 19 18 27 27 H 1.08999 * 109.46719 * 183.67431 * 1 2 3 28 28 H 1.08994 * 109.47082 * 303.67245 * 1 2 3 29 29 H 1.08998 * 109.47187 * 63.67511 * 1 2 3 30 30 H 0.96998 * 120.00265 * 179.97438 * 7 6 4 31 31 H 0.96999 * 120.00341 * 95.00040 * 12 2 1 32 32 H 1.09005 * 109.45984 * 298.68670 * 17 15 13 33 33 H 1.09001 * 109.46232 * 58.64333 * 17 15 13 34 34 H 1.08997 * 109.49914 * 181.31577 * 18 17 15 35 35 H 1.08998 * 109.49476 * 301.37533 * 18 17 15 36 36 H 1.09001 * 109.51436 * 185.70384 * 19 18 17 37 37 H 1.09005 * 109.42836 * 65.42379 * 19 18 17 38 38 H 1.08998 * 115.54982 * 34.42088 * 23 21 20 39 39 H 1.08999 * 117.49713 * 359.97438 * 24 23 21 40 40 H 1.08995 * 117.49903 * 145.02306 * 24 23 21 41 41 H 1.09002 * 117.49705 * 214.98085 * 25 23 21 42 42 H 1.08994 * 117.50287 * 359.97438 * 25 23 21 43 43 H 1.08995 * 109.58915 * 66.43515 * 26 20 19 44 44 H 1.09005 * 109.58800 * 186.85751 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.5786 -1.6369 -1.1339 6 6 1.7945 -0.1772 -2.4796 7 7 1.2992 1.0358 -2.5935 8 14 2.1759 -1.1778 -4.0102 9 1 1.0240 -2.0608 -4.3242 10 1 2.4226 -0.2611 -5.1522 11 1 3.3844 -2.0070 -3.7712 12 7 2.0184 -0.6906 1.1960 13 6 2.1471 -0.0183 2.3571 14 8 1.8590 1.1585 2.4115 15 6 2.6490 -0.7289 3.5876 16 1 3.6477 -1.1226 3.3986 17 6 1.7032 -1.8809 3.9346 18 6 2.2304 -2.6233 5.1646 19 6 2.2810 -1.6642 6.3526 20 7 3.0670 -0.4805 5.9788 21 6 4.1077 -0.0802 6.7360 22 8 4.7520 0.8956 6.4141 23 6 4.4708 -0.8452 7.9826 24 6 4.2358 -0.1557 9.3281 25 6 5.6610 -0.3393 8.8003 26 6 2.7008 0.2549 4.7608 27 1 -0.3633 -1.0256 0.0659 28 1 -0.3633 0.5698 0.8552 29 1 -0.3633 0.4557 -0.9211 30 1 1.1322 1.4109 -3.4723 31 1 2.2492 -1.6318 1.1525 32 1 0.7105 -1.4842 4.1477 33 1 1.6454 -2.5697 3.0918 34 1 1.5689 -3.4578 5.3971 35 1 3.2327 -2.9996 4.9605 36 1 2.7500 -2.1611 7.2019 37 1 1.2680 -1.3614 6.6175 38 1 4.3144 -1.9228 7.9352 39 1 3.8190 0.8513 9.3116 40 1 3.9253 -0.7798 10.1660 41 1 6.2873 -1.0843 9.2911 42 1 6.1816 0.5464 8.4364 43 1 1.7228 0.7174 4.8932 44 1 3.4468 1.0239 4.5601 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000194645090.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:28:05 Heat of formation + Delta-G solvation = -81.990987 kcal Electronic energy + Delta-G solvation = -24015.954827 eV Core-core repulsion = 20546.506081 eV Total energy + Delta-G solvation = -3469.448746 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 294.173 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.66611 -40.61864 -38.45748 -36.99443 -36.72009 -34.56609 -33.87716 -32.36326 -30.80608 -27.36451 -27.17966 -25.74518 -24.17518 -23.29199 -22.98747 -21.97473 -20.91453 -19.83426 -19.01931 -18.47017 -17.59208 -17.24242 -16.82951 -16.51787 -16.13199 -15.87906 -15.53505 -15.35085 -15.05163 -14.82780 -14.44292 -14.30942 -14.00274 -13.85801 -13.62731 -13.43761 -13.00967 -12.92165 -12.72085 -12.51646 -12.43886 -12.37413 -12.17338 -12.07668 -11.96268 -11.65857 -11.49116 -11.36601 -11.17891 -10.90844 -10.63024 -10.56391 -9.80020 -9.72769 -8.22253 -6.36333 1.42016 1.43812 1.44886 1.54703 1.75150 1.81353 2.35743 2.64289 2.92484 3.09987 3.42431 3.61993 3.78601 3.82278 3.86348 3.98540 4.08701 4.10481 4.20238 4.28918 4.53022 4.64003 4.72391 4.73782 4.75885 4.78763 4.86959 4.91205 4.94176 5.02063 5.05417 5.09404 5.13406 5.24816 5.37254 5.39814 5.45546 5.58194 5.61148 5.87129 6.01360 6.37284 6.72356 6.91795 7.10663 7.30243 7.52076 8.87111 Molecular weight = 294.17amu Principal moments of inertia in cm(-1) A = 0.031300 B = 0.003030 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.346728 B = 9240.089370 C = 9372.244481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.267 3.733 3 H -0.003 1.003 4 C -0.549 4.549 5 H 0.075 0.925 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.971 3.029 9 H -0.267 1.267 10 H -0.289 1.289 11 H -0.263 1.263 12 N -0.699 5.699 13 C 0.504 3.496 14 O -0.603 6.603 15 C -0.106 4.106 16 H 0.104 0.896 17 C -0.109 4.109 18 C -0.125 4.125 19 C 0.097 3.903 20 N -0.604 5.604 21 C 0.530 3.470 22 O -0.597 6.597 23 C -0.195 4.195 24 C -0.138 4.138 25 C -0.156 4.156 26 C 0.139 3.861 27 H 0.052 0.948 28 H 0.015 0.985 29 H 0.047 0.953 30 H 0.265 0.735 31 H 0.406 0.594 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.115 0.885 35 H 0.075 0.925 36 H 0.122 0.878 37 H 0.081 0.919 38 H 0.163 0.837 39 H 0.080 0.920 40 H 0.140 0.860 41 H 0.132 0.868 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.348 -14.445 23.452 27.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.164 3.836 3 H 0.015 0.985 4 C -0.587 4.587 5 H 0.093 0.907 6 C -0.186 4.186 7 N -0.559 5.559 8 Si 0.796 3.204 9 H -0.192 1.192 10 H -0.215 1.215 11 H -0.187 1.187 12 N -0.347 5.347 13 C 0.290 3.710 14 O -0.485 6.485 15 C -0.128 4.128 16 H 0.122 0.878 17 C -0.147 4.147 18 C -0.163 4.163 19 C -0.024 4.024 20 N -0.335 5.335 21 C 0.321 3.679 22 O -0.478 6.478 23 C -0.216 4.216 24 C -0.175 4.175 25 C -0.194 4.194 26 C 0.015 3.985 27 H 0.071 0.929 28 H 0.034 0.966 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.241 0.759 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.133 0.867 35 H 0.094 0.906 36 H 0.140 0.860 37 H 0.099 0.901 38 H 0.180 0.820 39 H 0.099 0.901 40 H 0.158 0.842 41 H 0.150 0.850 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 2.399 -12.989 23.165 26.666 hybrid contribution 0.172 0.284 -1.617 1.651 sum 2.571 -12.705 21.548 25.146 Atomic orbital electron populations 1.21812 0.98098 0.99548 0.99014 1.18363 0.91116 0.92134 0.82033 0.98469 1.21519 1.37217 1.09045 0.90884 0.90676 1.25843 0.94734 0.95471 1.02537 1.70144 1.45122 1.15600 1.24987 0.85372 0.79084 0.78254 0.77723 1.19235 1.21528 1.18694 1.46223 1.64882 1.14184 1.09460 1.21113 0.77382 0.86855 0.85641 1.90651 1.53267 1.18505 1.86042 1.21572 1.02418 0.97651 0.91153 0.87768 1.21580 0.97594 0.95018 1.00497 1.21873 1.03363 0.98216 0.92836 1.22135 0.96703 0.84418 0.99115 1.48166 1.31091 1.30176 1.24065 1.20588 0.78635 0.83792 0.84930 1.90687 1.53522 1.30269 1.73356 1.22305 1.08163 1.01395 0.89715 1.23060 0.98765 1.01597 0.94093 1.23044 0.91405 1.03588 1.01344 1.21011 1.00711 0.93404 0.83371 0.92895 0.96559 0.93357 0.92564 0.75893 0.91445 0.89652 0.86671 0.90585 0.85989 0.90092 0.81999 0.90121 0.84164 0.84981 0.90460 0.91582 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.26 9.36 71.98 0.67 -5.59 16 2 C 0.27 14.00 2.42 44.25 0.11 14.11 16 3 H 0.00 -0.17 7.52 -2.38 -0.02 -0.19 16 4 C -0.55 -29.20 8.66 25.60 0.22 -28.98 16 5 H 0.08 3.70 7.74 -2.91 -0.02 3.67 16 6 C 0.01 0.78 5.17 84.65 0.44 1.22 16 7 N -0.92 -54.30 12.16 21.45 0.26 -54.04 16 8 Si 0.97 42.16 29.55 68.60 2.03 44.19 16 9 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 10 H -0.29 -12.63 7.11 99.48 0.71 -11.93 16 11 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 12 N -0.70 -28.96 4.96 -446.10 -2.21 -31.17 16 13 C 0.50 20.54 7.12 87.66 0.62 21.16 16 14 O -0.60 -30.88 15.58 -3.03 -0.05 -30.92 16 15 C -0.11 -3.03 2.67 -11.46 -0.03 -3.06 16 16 H 0.10 2.82 8.14 -2.38 -0.02 2.80 16 17 C -0.11 -2.11 5.08 30.62 0.16 -1.95 16 18 C -0.13 -1.40 6.06 30.53 0.19 -1.22 16 19 C 0.10 1.19 6.32 86.22 0.54 1.73 16 20 N -0.60 -13.85 2.98 -819.74 -2.44 -16.30 16 21 C 0.53 13.71 7.48 87.66 0.66 14.37 16 22 O -0.60 -22.07 15.67 -3.03 -0.05 -22.11 16 23 C -0.20 -2.89 5.13 -11.54 -0.06 -2.95 16 24 C -0.14 -1.64 10.24 30.62 0.31 -1.33 16 25 C -0.16 -2.28 10.05 30.62 0.31 -1.97 16 26 C 0.14 4.33 5.07 86.36 0.44 4.77 16 27 H 0.05 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.05 2.62 6.83 -2.39 -0.02 2.60 16 30 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 31 H 0.41 13.79 7.94 -92.71 -0.74 13.05 16 32 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 33 H 0.08 1.52 7.54 -2.39 -0.02 1.50 16 34 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.12 0.69 5.51 -2.39 -0.01 0.67 16 37 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 38 H 0.16 1.16 6.56 -2.39 -0.02 1.14 16 39 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.14 0.69 8.14 -2.39 -0.02 0.67 16 41 H 0.13 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.08 1.62 7.67 -2.39 -0.02 1.60 16 43 H 0.07 2.18 7.96 -2.39 -0.02 2.16 16 44 H 0.06 2.28 7.01 -2.38 -0.02 2.26 16 Total: -1.00 -79.77 355.05 2.38 -77.39 By element: Atomic # 1 Polarization: 22.39 SS G_CDS: 0.26 Total: 22.66 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 4.57 Total: 10.31 kcal Atomic # 7 Polarization: -97.12 SS G_CDS: -4.39 Total: -101.51 kcal Atomic # 8 Polarization: -52.94 SS G_CDS: -0.09 Total: -53.04 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -79.77 2.38 -77.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194645090.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.600 kcal (2) G-P(sol) polarization free energy of solvation -79.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds